Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.6e-300 1034.6 526 100.0
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 1.4e-104 384.4 259 81.1
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 3.9e-67 260.0 184 75.0
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 9.1e-64 248.8 197 68.5
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 7.2e-61 239.2 200 65.0
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 5.3e-56 223.0 195 64.1
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 3.2e-53 213.8 199 59.3
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.2e-53 213.4 200 56.0
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 2.7e-52 210.7 205 57.6
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.7e-52 209.9 208 55.3
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 6.1e-52 209.5 205 57.1
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 6.1e-52 209.5 204 57.4
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 8.0e-52 209.1 200 57.5
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.4e-51 208.4 205 56.6
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.8e-51 208.0 196 59.7
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 2.3e-51 207.6 201 59.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.3e-51 207.6 212 53.8
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.0e-51 207.2 199 58.3
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 8.8e-51 205.7 201 57.2
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 8.8e-51 205.7 215 53.5
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 8.8e-51 205.7 200 56.0
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 8.8e-51 205.7 216 55.1
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.2e-50 205.3 200 58.0
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.5e-50 204.9 194 58.2
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.5e-50 204.9 200 56.5
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.5e-50 204.9 198 58.1
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.0e-50 204.5 196 57.1
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 2.6e-50 204.1 182 59.9
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.6e-50 204.1 207 55.1
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.6e-50 204.1 208 54.3
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 3.4e-50 203.8 199 56.8
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.4e-50 203.8 208 53.8
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 4.4e-50 203.4 183 58.5
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 4.4e-50 203.4 196 57.7
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 5.7e-50 203.0 194 57.7
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 7.5e-50 202.6 199 56.8
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 7.5e-50 202.6 206 56.3
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 7.5e-50 202.6 211 55.9
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 9.8e-50 202.2 207 56.0
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 1.3e-49 201.8 197 57.9
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.3e-49 201.8 186 58.1
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 1.3e-49 201.8 188 58.0
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 2.2e-49 201.1 202 57.9
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 2.8e-49 200.7 203 54.7
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 3.7e-49 200.3 198 57.1
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.7e-49 200.3 187 58.8
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.7e-49 200.3 198 57.6
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.8e-49 199.9 198 56.6
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 4.8e-49 199.9 198 56.6
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.8e-49 199.9 197 55.3
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 6.3e-49 199.5 194 55.7
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 6.3e-49 199.5 204 56.4
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.1e-48 198.7 204 56.4
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.1e-48 198.7 198 56.1
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.1e-48 198.7 200 56.5
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.4e-48 198.4 195 56.9
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 1.4e-48 198.4 194 55.7
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.8e-48 198.0 201 57.2
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 2.4e-48 197.6 202 55.4
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 3.1e-48 197.2 201 56.2
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 3.1e-48 197.2 193 54.9
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.1e-48 197.2 200 56.0
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 4.1e-48 196.8 195 53.8
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.1e-48 196.8 229 52.0
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 5.4e-48 196.4 196 54.1
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 5.4e-48 196.4 209 53.1
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 9.1e-48 195.7 196 55.1
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 9.1e-48 195.7 208 52.4
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.2e-47 195.3 201 57.7
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 3.5e-47 193.7 202 52.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 3.5e-47 193.7 202 54.5
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 3.5e-47 193.7 194 53.1
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 4.5e-47 193.4 200 55.0
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 4.5e-47 193.4 182 55.5
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 5.9e-47 193.0 195 53.8
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 5.9e-47 193.0 194 54.6
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 5.9e-47 193.0 198 53.0
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 5.9e-47 193.0 220 50.9
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 7.7e-47 192.6 190 54.7
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 7.7e-47 192.6 200 56.0
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.0e-46 192.2 194 56.2
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.7e-46 191.4 200 55.5
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.7e-46 191.4 198 52.5
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.9e-46 190.7 202 53.5
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 3.8e-46 190.3 190 54.2
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.1e-45 188.7 241 48.1
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 1.2e-44 185.3 180 58.3
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.7e-44 184.1 191 54.5
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 8.0e-44 182.6 182 56.6
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.4e-43 181.8 161 59.6
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.5e-42 178.3 135 64.4
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.7e-41 174.9 197 49.2
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 2.2e-41 174.5 206 51.9
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 1.2e-39 168.7 117 70.1
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 7.7e-39 166.0 161 57.1
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 7.7e-39 166.0 230 46.1
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-38 164.9 142 59.2
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.1e-36 157.9 159 56.0
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.8e-36 157.5 155 58.1
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 8.0e-36 156.0 160 56.2
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.2e-34 152.1 155 52.9
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 7.5e-34 149.4 155 57.4
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.3e-33 148.7 211 42.7
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 2.9e-33 147.5 262 39.7
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 9.2e-32 142.5 167 50.9
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.2e-31 142.1 193 44.6
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 2.0e-31 141.4 121 60.3
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.7e-31 141.0 208 44.2
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 3.5e-31 140.6 190 48.9
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.3e-30 138.7 150 55.3
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 3.0e-30 137.5 124 58.1
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.9e-29 134.8 199 42.2
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 5.6e-29 133.3 221 43.4
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.2e-28 132.1 146 52.7
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.2e-28 132.1 201 40.8
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 3.1e-27 127.5 100 65.0
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.0e-23 113.2 176 39.8
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 7.8e-23 112.8 201 38.8
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 2.5e-21 107.8 70 72.9
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 6.8e-19 99.8 57 73.7
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 4.6e-15 87.0 79 58.2
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 7.8e-15 86.3 74 54.1
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 1.7e-14 85.1 53 69.8
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 3.3e-13 80.9 91 51.6
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 2.1e-12 78.2 48 79.2
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.7e-12 77.0 48 79.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.2e-12 76.6 48 79.2
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 1.1e-11 75.9 113 43.4
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.4e-11 75.5 48 77.1
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.4e-11 75.5 48 75.0
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 5.2e-11 73.6 64 48.4
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.8e-10 70.1 43 79.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.3e-09 68.9 43 79.1
SalBow6G3179 Salvia bowleyana HOM05D001388 ORTHO05D001234 8.4e-09 66.2 64 60.9
Migut.C01332 Erythranthe guttata HOM05D001388 ORTHO05D001234 1.9e-08 65.1 64 57.8
Nitab4.5_0000016g0470 Nicotiana tabacum HOM05D001388 ORTHO05D001234 1.9e-08 65.1 64 59.4
Nitab4.5_0004263g0040 Nicotiana tabacum HOM05D001388 ORTHO05D001234 1.9e-08 65.1 64 59.4
Oeu006600.1 Olea europaea HOM05D001388 ORTHO05D001234 4.1e-08 63.9 64 57.8
Oeu002319.2 Olea europaea HOM05D001388 ORTHO05D001234 1.2e-07 62.4 98 45.9
Solyc11g028010.2 Solanum lycopersicum HOM05D001388 ORTHO05D001234 1.2e-07 62.4 64 54.7
Sopen11g012480 Solanum pennellii HOM05D001388 ORTHO05D001234 1.2e-07 62.4 64 54.7
PGSC0003DMG400025528 Solanum tuberosum HOM05D001388 ORTHO05D001234 1.2e-07 62.4 64 54.7
SGA_v2.0_scaffold25G11033 Striga asiatica HOM05D001388 ORTHO05D001234 1.6e-07 62.0 98 45.9
SGA_v2.0_scaffold19G08932 Striga asiatica HOM05D001388 ORTHO05D001234 2.1e-07 61.6 98 45.9
MSTRG.25480 Avicennia marina HOM05D001388 ORTHO05D001234 2.7e-07 61.2 98 44.9
CAN.G194.18 Capsicum annuum HOM05D001388 ORTHO05D001234 2.3e-06 58.2 98 42.9
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 2.3e-06 58.2 42 64.3
DCAR_004331 Daucus carota HOM05D001388 ORTHO05D001234 3.0e-06 57.8 64 54.7
Lj7A626T77 Lonicera japonica HOM05D001388 ORTHO05D001234 3.0e-06 57.8 67 50.7
Cc10_g09430 Coffea canephora HOM05D001388 ORTHO05D001234 3.9e-06 57.4 64 51.6
Lj3A139G11 Lonicera japonica HOM05D001388 ORTHO05D001234 3.9e-06 57.4 67 50.7
Nitab4.5_0005558g0050 Nicotiana tabacum HOM05D001388 ORTHO05D001234 3.9e-06 57.4 66 48.5
Dinv41791 Davidia involucrata HOM05D001388 ORTHO05D001234 5.1e-06 57.0 64 50.0
Peaxi162Scf00688g00350 Petunia axillaris HOM05D001388 ORTHO05D001234 6.6e-06 56.6 98 41.8
Sopen11g012440 Solanum pennellii HOM05D001388 ORTHO05D001234 6.6e-06 56.6 92 42.4


User provided reference genes

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