Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 0.0e+00 1333.9 647 100.0
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 1.6e-275 952.6 530 86.2
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 3.0e-274 948.3 529 85.8
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 2.3e-271 938.7 534 85.6
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 2.3e-271 938.7 524 86.1
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 2.6e-270 935.3 535 83.9
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 5.4e-268 927.5 527 85.4
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 1.2e-267 926.4 539 82.7
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 6.6e-266 920.6 535 83.4
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 3.6e-264 914.8 541 81.0
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 1.4e-263 912.9 526 83.3
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 3.1e-263 911.8 521 83.9
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 4.0e-263 911.4 519 83.2
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 6.8e-263 910.6 521 83.7
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 1.2e-262 909.8 526 83.1
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 9.9e-262 906.7 535 81.3
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 9.9e-262 906.7 526 82.7
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 2.7e-259 898.7 497 84.3
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 8.7e-258 893.6 540 80.0
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.9e-257 892.5 538 79.7
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 4.3e-257 891.3 538 79.4
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 7.3e-257 890.6 533 79.7
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 1.2e-256 889.8 582 74.7
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 3.6e-256 888.3 538 77.9
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 9.0e-255 883.6 539 78.7
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 9.0e-255 883.6 532 79.9
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 4.4e-254 881.3 530 80.6
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 5.8e-254 880.9 533 79.4
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 5.8e-254 880.9 526 79.5
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 2.2e-253 879.0 532 78.6
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 6.4e-253 877.5 539 77.7
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 8.4e-253 877.1 519 79.6
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 8.4e-253 877.1 534 78.7
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.4e-252 876.3 530 80.0
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.9e-252 875.9 542 77.9
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 4.2e-252 874.8 493 82.4
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 1.6e-251 872.8 510 81.2
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 6.0e-251 870.9 518 79.9
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.0e-250 870.2 521 79.1
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 2.3e-250 869.0 535 77.9
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 2.3e-250 869.0 533 78.2
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 3.0e-250 868.6 531 78.2
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 6.6e-250 867.5 568 74.5
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 8.7e-250 867.1 538 77.3
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.5e-249 866.3 530 78.9
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.5e-249 866.3 536 78.5
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.9e-249 865.9 522 79.3
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 1.9e-249 865.9 523 78.8
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.5e-249 865.5 543 76.6
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 4.3e-249 864.8 536 78.0
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 4.3e-249 864.8 550 76.0
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 5.6e-249 864.4 521 78.9
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 5.6e-249 864.4 524 78.8
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 5.6e-249 864.4 529 77.7
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 5.6e-249 864.4 532 77.4
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 2.1e-248 862.4 532 77.3
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 2.1e-248 862.4 590 71.7
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.1e-248 862.4 469 86.4
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 8.1e-248 860.5 536 77.6
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 8.1e-248 860.5 517 78.7
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.8e-247 859.4 524 78.4
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 2.4e-247 859.0 527 78.2
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 2.4e-247 859.0 535 78.5
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 2.4e-247 859.0 549 75.0
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 2.4e-247 859.0 536 76.9
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 3.1e-247 858.6 524 78.8
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.5e-246 856.3 527 78.2
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 2.6e-246 855.5 532 77.6
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 3.4e-246 855.1 527 78.9
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 2.9e-245 852.0 525 77.9
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 1.1e-244 850.1 521 78.3
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 1.9e-244 849.4 520 78.5
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 5.4e-244 847.8 532 77.1
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 5.1e-242 841.3 546 75.6
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 1.4e-239 833.2 526 77.0
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 2.4e-239 832.4 535 76.1
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 3.1e-239 832.0 517 76.2
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 6.9e-239 830.9 495 79.8
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 6.9e-239 830.9 526 78.1
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 6.9e-239 830.9 532 76.9
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 2.6e-238 828.9 518 76.8
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 2.6e-238 828.9 495 80.0
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 4.5e-238 828.2 518 76.8
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 1.3e-237 826.6 513 76.0
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 2.2e-237 825.9 519 76.3
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 2.2e-237 825.9 519 76.3
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 1.1e-236 823.5 520 76.3
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 1.1e-236 823.5 542 74.9
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 3.9e-234 815.1 531 74.6
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 8.7e-234 813.9 528 75.2
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.5e-233 813.1 516 75.0
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 9.6e-233 810.4 531 74.4
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 2.8e-232 808.9 528 73.5
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 1.8e-231 806.2 482 78.6
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 6.5e-229 797.7 528 72.9
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 4.2e-228 795.0 528 72.9
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 3.5e-227 792.0 539 71.4
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.3e-226 790.0 547 70.6
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.9e-225 786.2 547 70.4
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.2e-224 782.7 531 71.6
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.4e-220 770.0 526 71.5
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 3.7e-216 755.4 531 69.7
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 9.1e-215 750.7 476 74.8
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 7.7e-214 747.7 398 86.7
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 6.5e-213 744.6 527 69.3
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 1.1e-204 717.2 426 78.6
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 2.3e-202 709.5 530 66.2
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 8.8e-202 707.6 470 72.3
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 4.8e-200 701.8 540 64.8
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 5.7e-193 678.3 390 82.3
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 3.1e-191 672.5 398 82.2
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.6e-187 660.2 507 66.5
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 2.3e-178 629.8 398 74.1
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.1e-175 619.4 329 86.9
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 7.3e-148 528.5 397 67.5
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 7.3e-148 528.5 284 85.2
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 8.1e-147 525.0 473 55.2
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.8e-146 523.9 400 66.8
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.8e-146 523.9 486 54.1
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 7.8e-134 481.9 348 67.5
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.9e-127 460.7 411 58.4
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 4.2e-127 459.5 451 53.7
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 2.5e-124 450.3 458 50.0
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 2.5e-116 423.7 325 66.2
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 9.3e-111 405.2 261 75.5
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 6.3e-91 339.3 181 85.1
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.5e-87 327.4 226 74.3
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 4.4e-84 316.6 181 81.8
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 3.7e-75 287.0 223 63.7
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.6e-54 218.4 134 73.9
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 2.6e-44 184.5 103 80.6
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 3.7e-43 180.6 115 75.7
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 9.2e-34 149.4 81 82.7
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 1.4e-26 125.6 65 84.6
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 2.4e-21 108.2 66 77.3
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 2.4e-21 108.2 66 77.3
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 6.9e-21 106.7 57 84.2
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 1.6e-17 95.5 53 83.0
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 5.1e-16 90.5 50 80.0
SGA_v2.0_scaffold179G39596 Striga asiatica HOM05D048265 ORTHO05D403203 1.8e-13 82.0 83 53.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 3.8e-11 74.3 65 56.9
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.4e-10 71.6 57 63.2
SGA_v2.0_scaffold179G39591 Striga asiatica HOM05D048265 ORTHO05D405812 8.7e-08 63.2 53 66.0


User provided reference genes

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