Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold71G23853 Striga asiatica HOM05D005330 ORTHO05D006489 2.2e-249 865.1 436 100.0
SGA_v2.0_scaffold122G33335 Striga asiatica HOM05D005330 ORTHO05D006489 1.1e-163 580.5 434 69.4
SalBow6G0719 Salvia bowleyana HOM05D005330 ORTHO05D006489 4.9e-132 475.3 442 55.7
SalBow6G0331 Salvia bowleyana HOM05D005330 ORTHO05D006489 6.5e-132 474.9 442 55.7
Migut.I01076 Erythranthe guttata HOM05D005330 ORTHO05D006489 2.5e-128 463.0 443 56.0
vmacro15037 Vaccinium macrocarpon HOM05D005330 ORTHO05D006489 2.9e-124 449.5 440 54.5
Dinv20432 Davidia involucrata HOM05D005330 ORTHO05D006489 2.1e-122 443.4 440 53.9
GSVIVG01016752001 Vitis vinifera HOM05D005330 ORTHO05D006489 1.4e-121 440.7 438 53.4
DCAR_022693 Daucus carota HOM05D005330 ORTHO05D006489 5.7e-120 435.3 437 52.9
Cc04_g01320 Coffea canephora HOM05D005330 ORTHO05D006489 3.1e-118 429.5 441 53.1
Actinidia32189 Actinidia chinensis HOM05D005330 ORTHO05D006489 2.5e-115 419.9 439 52.4
VMungo0331G1542 Vigna mungo HOM05D005330 ORTHO05D006489 3.2e-115 419.5 437 48.7
Nitab4.5_0000189g0150 Nicotiana tabacum HOM05D005330 ORTHO05D006489 7.2e-115 418.3 441 51.7
Nitab4.5_0001199g0030 Nicotiana tabacum HOM05D005330 ORTHO05D006489 7.2e-115 418.3 441 51.9
Ah.08g216810 Amaranthus hybridus HOM05D005330 ORTHO05D006489 1.2e-114 417.5 449 47.9
EL10Ac7g16412 Beta vulgaris HOM05D005330 ORTHO05D006489 1.2e-114 417.5 445 49.9
Lsat_1_v5_gn_5_136241 Lactuca sativa HOM05D005330 ORTHO05D006489 1.2e-114 417.5 440 51.6
Solyc12g049330.2 Solanum lycopersicum HOM05D005330 ORTHO05D006489 1.2e-114 417.5 440 50.9
Sc10g0007910 Simmondsia chinensis HOM05D005330 ORTHO05D006489 1.6e-114 417.2 443 50.1
Hund05737 Selenicereus undatus HOM05D005330 ORTHO05D006489 7.9e-114 414.8 445 49.4
Sopen12g023810 Solanum pennellii HOM05D005330 ORTHO05D006489 7.9e-114 414.8 440 50.2
Oeu015485.2 Olea europaea HOM05D005330 ORTHO05D006489 1.4e-113 414.1 437 51.9
Cfa003530 Carpinus fangiana HOM05D005330 ORTHO05D006489 1.8e-113 413.7 441 49.4
Thecc.06G120800 Theobroma cacao HOM05D005330 ORTHO05D006489 1.8e-113 413.7 438 49.5
PGSC0003DMG400014100 Solanum tuberosum HOM05D005330 ORTHO05D006489 6.7e-113 411.8 424 52.1
Glyma.16G008300 Glycine max HOM05D005330 ORTHO05D006489 8.8e-113 411.4 437 47.6
Phvul.010G129300 Phaseolus vulgaris HOM05D005330 ORTHO05D006489 1.1e-112 411.0 437 49.0
Hund18689 Selenicereus undatus HOM05D005330 ORTHO05D006489 2.0e-112 410.2 443 51.2
Haze_16035 Corylus avellana HOM05D005330 ORTHO05D006489 7.4e-112 408.3 469 48.2
Lj3g0015373 Lotus japonicus HOM05D005330 ORTHO05D006489 7.4e-112 408.3 437 48.7
Nn6g34611 Nelumbo nucifera HOM05D005330 ORTHO05D006489 7.4e-112 408.3 440 50.0
PGR119G1300 Punica granatum HOM05D005330 ORTHO05D006489 7.4e-112 408.3 442 49.8
Sabra03G0038500 Salix brachista HOM05D005330 ORTHO05D006489 1.3e-111 407.5 434 48.2
Eucgr.F04419 Eucalyptus grandis HOM05D005330 ORTHO05D006489 1.7e-111 407.1 438 49.3
Potri.003G065500 Populus trichocarpa HOM05D005330 ORTHO05D006489 6.3e-111 405.2 432 47.7
Gohir.D10G055300 Gossypium hirsutum HOM05D005330 ORTHO05D006489 8.2e-111 404.8 438 47.9
Gorai.011G059000 Gossypium raimondii HOM05D005330 ORTHO05D006489 8.2e-111 404.8 438 47.9
CiPaw.01G218300 Carya illinoinensis HOM05D005330 ORTHO05D006489 1.4e-110 404.1 440 48.9
Gohir.A10G053500 Gossypium hirsutum HOM05D005330 ORTHO05D006489 1.4e-110 404.1 438 47.7
Cpa.g.sc25.125 Carica papaya HOM05D005330 ORTHO05D006489 1.8e-110 403.7 438 48.6
Manes.11G019800 Manihot esculenta HOM05D005330 ORTHO05D006489 3.1e-110 402.9 438 49.1
Glyma.18G149800 Glycine max HOM05D005330 ORTHO05D006489 4.1e-110 402.5 441 48.5
Lalb_Chr04g0263541 Lupinus albus HOM05D005330 ORTHO05D006489 2.6e-109 399.8 437 47.4
Hma1.2p1_0686F.1_g203410 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 5.9e-109 398.7 441 47.6
QL05p004250 Quercus lobata HOM05D005330 ORTHO05D006489 1.0e-108 397.9 461 46.6
HanXRQChr12g0360301 Helianthus annuus HOM05D005330 ORTHO05D006489 1.2e-106 391.0 440 48.6
HanXRQChr12g0360351 Helianthus annuus HOM05D005330 ORTHO05D006489 1.2e-106 391.0 440 48.6
Prupe.3G040200 Prunus persica HOM05D005330 ORTHO05D006489 8.0e-106 388.3 440 47.0
Psat0s741g0240 Pisum sativum HOM05D005330 ORTHO05D006489 5.2e-105 385.6 437 47.4
Ca_23387_v3 Cicer arietinum L. HOM05D005330 ORTHO05D006489 6.7e-105 385.2 437 46.9
TWI79G1442 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 1.5e-104 384.0 436 47.2
Medtr8g020850 Medicago truncatula HOM05D005330 ORTHO05D006489 7.4e-104 381.7 436 45.4
TWI31G1192 Tripterygium wilfordii HOM05D005330 ORTHO05D006489 7.4e-104 381.7 436 47.0
Rhsim08G0239400 Rhododendron simsii HOM05D005330 ORTHO05D006489 1.3e-103 380.9 440 48.9
Ciclev10025803m.g Citrus clementina HOM05D005330 ORTHO05D006489 4.1e-102 375.9 427 47.1
Lj5A36G79 Lonicera japonica HOM05D005330 ORTHO05D006489 9.1e-102 374.8 454 47.6
Sed0005660 Sechium edule HOM05D005330 ORTHO05D006489 1.6e-101 374.0 454 45.6
Atru.chr1.3994 Acer truncatum HOM05D005330 ORTHO05D006489 2.6e-101 373.2 441 45.6
ClCG09G000970 Citrullus lanatus HOM05D005330 ORTHO05D006489 1.3e-100 370.9 460 43.7
Potri.001G168700 Populus trichocarpa HOM05D005330 ORTHO05D006489 1.7e-100 370.5 432 45.4
AUR62009886 Chenopodium quinoa HOM05D005330 ORTHO05D006489 1.5e-99 367.5 436 46.6
MD09G1182600 Malus domestica HOM05D005330 ORTHO05D006489 5.5e-99 365.5 434 44.2
Sed0026793 Sechium edule HOM05D005330 ORTHO05D006489 2.1e-98 363.6 458 42.8
Atru.chr1.3993 Acer truncatum HOM05D005330 ORTHO05D006489 1.5e-96 357.5 441 44.4
Hma1.2p1_0291F.1_g115070 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 5.7e-96 355.5 435 45.7
Aqoxy2G00145 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 1.1e-94 351.3 452 42.3
Glyma.03G080300 Glycine max HOM05D005330 ORTHO05D006489 3.5e-93 346.3 441 44.4
AUR62001479 Chenopodium quinoa HOM05D005330 ORTHO05D006489 5.9e-93 345.5 444 45.0
Duzib160G0528 Durio zibethinus HOM05D005330 ORTHO05D006489 7.7e-93 345.1 436 42.7
ATR0598G333 Amborella trichopoda HOM05D005330 ORTHO05D006489 1.3e-92 344.4 436 43.6
Peaxi162Scf00177g00417 Petunia axillaris HOM05D005330 ORTHO05D006489 3.8e-92 342.8 416 47.1
MD09G1182800 Malus domestica HOM05D005330 ORTHO05D006489 8.5e-92 341.7 442 43.9
RcHm_v2.0_Chr2g0145651 Rosa chinensis HOM05D005330 ORTHO05D006489 4.7e-90 335.9 443 41.3
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 6.1e-90 335.5 354 48.3
HPP92_013292 Vanilla planifolia HOM05D005330 ORTHO05D006489 6.1e-90 335.5 440 41.4
ECA234G4612 Erigeron canadensis HOM05D005330 ORTHO05D006489 1.4e-89 334.3 436 42.9
PSO135G0621 Papaver somniferum HOM05D005330 ORTHO05D006489 1.5e-88 330.9 435 43.2
CARHR044500 Cardamine hirsuta HOM05D005330 ORTHO05D006489 3.4e-88 329.7 436 40.8
FAN05G5341 Fragaria x ananassa HOM05D005330 ORTHO05D006489 7.5e-88 328.6 444 41.9
PSO724G1321 Papaver somniferum HOM05D005330 ORTHO05D006489 9.8e-88 328.2 442 41.9
BcaB04g17020 Brassica carinata HOM05D005330 ORTHO05D006489 4.9e-87 325.9 436 40.6
A08p01180 Brassica napus HOM05D005330 ORTHO05D006489 4.9e-87 325.9 436 41.1
FvH4_6g34790 Fragaria vesca HOM05D005330 ORTHO05D006489 8.3e-87 325.1 443 41.5
BraA06t23266Z Brassica rapa HOM05D005330 ORTHO05D006489 5.4e-86 322.4 425 41.2
A06p00510 Brassica napus HOM05D005330 ORTHO05D006489 9.1e-86 321.6 425 41.2
MD09G1182700 Malus domestica HOM05D005330 ORTHO05D006489 1.2e-85 321.2 442 40.5
BcaC08g43595 Brassica carinata HOM05D005330 ORTHO05D006489 1.6e-85 320.9 425 40.9
C06p09930 Brassica napus HOM05D005330 ORTHO05D006489 1.6e-85 320.9 425 40.9
BolC6t36066H Brassica oleracea HOM05D005330 ORTHO05D006489 1.6e-85 320.9 425 40.9
C03p92030 Brassica napus HOM05D005330 ORTHO05D006489 2.0e-85 320.5 436 39.9
BraA08t32169Z Brassica rapa HOM05D005330 ORTHO05D006489 7.7e-85 318.5 436 39.7
HanXRQChr12g0360331 Helianthus annuus HOM05D005330 ORTHO05D006489 7.7e-85 318.5 442 43.7
BcaB07g33256 Brassica carinata HOM05D005330 ORTHO05D006489 1.0e-84 318.2 425 40.7
BcaC01g01438 Brassica carinata HOM05D005330 ORTHO05D006489 1.7e-84 317.4 436 39.4
BolC3t21521H Brassica oleracea HOM05D005330 ORTHO05D006489 1.7e-84 317.4 436 39.7
SEGI_21309 Sequoiadendron giganteum HOM05D005330 ORTHO05D006489 2.3e-84 317.0 435 41.6
THA.LOC104810366 Tarenaya hassleriana HOM05D005330 ORTHO05D006489 2.3e-84 317.0 434 41.5
DCAR_016124 Daucus carota HOM05D005330 ORTHO05D006489 3.8e-84 316.2 440 42.7
Aa31LG10G1260 Aethionema arabicum HOM05D005330 ORTHO05D006489 9.5e-83 311.6 436 40.4
Sp1g40600 Schrenkiella parvula HOM05D005330 ORTHO05D006489 9.5e-83 311.6 437 39.8
arahy.Tifrunner.gnm1.ann1.K577WU Arachis hypogaea HOM05D005330 ORTHO05D006489 3.6e-82 309.7 342 48.0
arahy.Tifrunner.gnm1.ann1.RX87J0 Arachis hypogaea HOM05D005330 ORTHO05D006489 1.0e-81 308.1 342 47.7
CAN.G1455.4 Capsicum annuum HOM05D005330 ORTHO05D006489 3.0e-81 306.6 308 52.6
AL1G62870 Arabidopsis lyrata HOM05D005330 ORTHO05D006489 2.6e-80 303.5 439 40.1
AT1G54150 Arabidopsis thaliana HOM05D005330 ORTHO05D006489 4.9e-79 299.3 438 40.0
Thhalv10011564m.g Eutrema salsugineum HOM05D005330 ORTHO05D006489 6.3e-79 298.9 438 39.5
CDE05G1829 Ceratophyllum demersum HOM05D005330 ORTHO05D006489 8.3e-79 298.5 349 44.7
COL.COLO4_30752 Corchorus olitorius HOM05D005330 ORTHO05D006489 1.1e-78 298.1 438 40.6
Carub.0001s4339 Capsella rubella HOM05D005330 ORTHO05D006489 9.2e-78 295.0 438 39.7
MD02G1089500 Malus domestica HOM05D005330 ORTHO05D006489 8.6e-76 288.5 439 40.3
TAR624G1001 Trochodendron aralioides HOM05D005330 ORTHO05D006489 1.2e-74 284.6 282 52.5
Os03g0177300 Oryza sativa ssp. japonica HOM05D005330 ORTHO05D006489 9.8e-72 275.0 440 38.0
PSO135G0922 Papaver somniferum HOM05D005330 ORTHO05D006489 2.0e-69 267.3 430 38.6
Mapoly0002s0144 Marchantia polymorpha HOM05D005330 ORTHO05D006489 4.3e-67 259.6 467 35.1
MELO3C024354.2 Cucumis melo HOM05D005330 ORTHO05D006489 5.6e-67 259.2 342 40.1
SMO118G0169 Selaginella moellendorffii HOM05D005330 ORTHO05D006489 6.8e-65 252.3 444 34.2
CsaV3_7G034470 Cucumis sativus L. HOM05D005330 ORTHO05D006489 8.9e-65 251.9 341 39.9
TAR624G0147 Trochodendron aralioides HOM05D005330 ORTHO05D006489 1.7e-63 247.7 273 48.4
CAN.G1080.1 Capsicum annuum HOM05D005330 ORTHO05D006489 3.2e-62 243.4 305 45.2
AagrBONN_evm.TU.Sc2ySwM_228.1646 Anthoceros agrestis HOM05D005330 ORTHO05D006489 2.8e-58 230.3 448 35.7
PSO135G0120 Papaver somniferum HOM05D005330 ORTHO05D006489 3.7e-55 219.9 408 36.3
Pp3c13_6970 Physcomitrium patens HOM05D005330 ORTHO05D006489 7.8e-53 212.2 524 29.4
Pp3c16_12380 Physcomitrium patens HOM05D005330 ORTHO05D006489 3.8e-47 193.4 458 29.9
Zm00001eb401910 Zea mays HOM05D005330 ORTHO05D006489 3.8e-47 193.4 275 38.5
PSO724G1224 Papaver somniferum HOM05D005330 ORTHO05D006489 4.3e-43 179.9 231 41.1
CSS0046024 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 2.6e-40 170.6 119 68.9
CBR_g17139 Chara braunii HOM05D005330 ORTHO05D006489 3.2e-38 163.7 368 30.7
CSS0027574 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 1.3e-36 158.3 151 51.7
Actinidia21790 Actinidia chinensis HOM05D005330 ORTHO05D006489 8.7e-36 155.6 141 56.0
Actinidia21791 Actinidia chinensis HOM05D005330 ORTHO05D006489 2.8e-34 150.6 214 43.0
Aqoxy3G00178 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 2.9e-31 140.6 264 31.8
Lsat_1_v5_gn_5_136301 Lactuca sativa HOM05D005330 ORTHO05D006489 1.2e-29 135.2 304 33.6
Aqoxy3G00203 Aquilegia oxysepala HOM05D005330 ORTHO05D006489 2.7e-29 134.0 361 31.3
CSS0036813 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 3.1e-25 120.6 138 50.7
Dinv20433 Davidia involucrata HOM05D005330 ORTHO05D006489 3.1e-25 120.6 244 36.5
Oeu020346.1 Olea europaea HOM05D005330 ORTHO05D006489 7.4e-19 99.4 136 46.3
Oeu020347.1 Olea europaea HOM05D005330 ORTHO05D006489 3.4e-16 90.5 66 66.7
Eucgr.I00478 Eucalyptus grandis HOM05D005330 ORTHO05D006489 9.3e-14 82.4 117 41.0
DCAR_031911 Daucus carota HOM05D005330 ORTHO05D006489 6.3e-10 69.7 84 42.9
Aqoxy3G02542 Aquilegia oxysepala HOM05D055259 ORTHO05D006489 8.2e-10 69.3 157 33.1
Pp3c8_18050 Physcomitrium patens HOM05D001948 ORTHO05D001873 1.4e-09 68.6 81 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4886 Anthoceros agrestis HOM05D001948 ORTHO05D001873 1.2e-08 65.5 63 42.9
Carub.0007s1687 Capsella rubella HOM05D001948 ORTHO05D001873 2.2e-07 61.2 69 39.1
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 2.2e-07 61.2 154 27.9
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-07 61.2 154 27.9
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-07 61.2 154 27.9
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-07 61.2 154 27.9
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.2e-07 61.2 154 27.9
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 3.8e-07 60.5 150 30.0
TWI79G1057 Tripterygium wilfordii HOM05D001407 ORTHO05D001314 3.8e-07 60.5 64 43.8
Mapoly0058s0040 Marchantia polymorpha HOM05D001948 ORTHO05D001873 5.0e-07 60.1 78 38.5
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 5.0e-07 60.1 154 27.3
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 6.5e-07 59.7 144 29.9
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 8.5e-07 59.3 152 27.6
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 1.1e-06 58.9 148 25.7
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 1.4e-06 58.5 147 27.9
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 1.4e-06 58.5 140 27.1
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 1.9e-06 58.2 81 39.5
Eucgr.H01526 Eucalyptus grandis HOM05D003358 ORTHO05D003864 1.9e-06 58.2 85 37.6
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 1.9e-06 58.2 155 26.5
RhsimUnG0257000 Rhododendron simsii HOM05D002922 ORTHO05D000401 1.9e-06 58.2 41 70.7
Thhalv10027110m.g Eutrema salsugineum HOM05D001948 ORTHO05D001873 3.2e-06 57.4 79 36.7
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 3.2e-06 57.4 154 25.3
Pp3c23_15080 Physcomitrium patens HOM05D001948 ORTHO05D001873 3.2e-06 57.4 124 29.0
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 4.2e-06 57.0 114 28.9
AT4G24204 Arabidopsis thaliana HOM05D001948 ORTHO05D001873 5.5e-06 56.6 93 31.2
BcaC06g32905 Brassica carinata HOM05D001948 ORTHO05D001873 5.5e-06 56.6 73 38.4
COL.COLO4_11510 Corchorus olitorius HOM05D001948 ORTHO05D001873 5.5e-06 56.6 142 26.8
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 7.2e-06 56.2 144 27.8
Duzib093G1167 Durio zibethinus HOM05D001948 ORTHO05D001873 7.2e-06 56.2 76 32.9
Lalb_Chr08g0245451 Lupinus albus HOM05D001948 ORTHO05D001873 7.2e-06 56.2 79 36.7
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 7.2e-06 56.2 148 25.0
Os08g0135400 Oryza sativa ssp. japonica HOM05D000631 ORTHO05D000524 9.4e-06 55.8 58 48.3
Thecc.08G093900 Theobroma cacao HOM05D001948 ORTHO05D001873 9.4e-06 55.8 70 34.3


User provided reference genes

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