Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23615 Striga asiatica HOM05D004503 ORTHO05D005460 0.0e+00 1728.0 864 100.0
Migut.M00558 Erythranthe guttata HOM05D004503 ORTHO05D005460 0.0e+00 1573.1 864 90.0
MSTRG.6739 Avicennia marina HOM05D004503 ORTHO05D005460 0.0e+00 1569.3 864 90.4
Sopen07g029580 Solanum pennellii HOM05D004503 ORTHO05D005460 0.0e+00 1443.7 867 82.1
Solyc07g056220.3 Solanum lycopersicum HOM05D004503 ORTHO05D005460 0.0e+00 1437.6 867 81.8
Dinv07955 Davidia involucrata HOM05D004503 ORTHO05D005460 0.0e+00 1433.3 865 82.7
Lj1C677T5 Lonicera japonica HOM05D004503 ORTHO05D005460 0.0e+00 1428.7 865 82.0
Nitab4.5_0002251g0070 Nicotiana tabacum HOM05D004503 ORTHO05D005460 0.0e+00 1421.0 868 81.3
Peaxi162Scf00111g00222 Petunia axillaris HOM05D004503 ORTHO05D005460 0.0e+00 1416.4 931 76.4
CAN.G585.22 Capsicum annuum HOM05D004503 ORTHO05D005460 0.0e+00 1411.0 867 80.6
GSVIVG01020844001 Vitis vinifera HOM05D004503 ORTHO05D005460 0.0e+00 1407.1 858 81.2
TAR629G1355 Trochodendron aralioides HOM05D004503 ORTHO05D005460 0.0e+00 1405.6 865 80.7
Thecc.01G170000 Theobroma cacao HOM05D004503 ORTHO05D005460 0.0e+00 1392.9 868 79.7
vmacro08730 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 0.0e+00 1392.1 941 75.1
Actinidia12541 Actinidia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 870 79.2
Gorai.001G211500 Gossypium raimondii HOM05D004503 ORTHO05D005460 0.0e+00 1386.3 866 79.1
Medtr0071s0030 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1385.2 874 79.2
Medtr3g046640 Medicago truncatula HOM05D004503 ORTHO05D005460 0.0e+00 1384.8 874 79.2
Cc05_g09730 Coffea canephora HOM05D004503 ORTHO05D005460 0.0e+00 1382.9 864 78.5
Ca_14599_v3 Cicer arietinum L. HOM05D004503 ORTHO05D005460 0.0e+00 1382.5 874 79.1
Gohir.A07G183000 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1379.4 868 78.8
Glyma.18G109800 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1378.2 865 79.0
TWI14G0297 Tripterygium wilfordii HOM05D004503 ORTHO05D005460 0.0e+00 1377.8 872 78.9
COL.COLO4_08894 Corchorus olitorius HOM05D004503 ORTHO05D005460 0.0e+00 1377.5 885 77.5
VMungo0647G0468 Vigna mungo HOM05D004503 ORTHO05D005460 0.0e+00 1376.3 865 79.1
Glyma.08G307900 Glycine max HOM05D004503 ORTHO05D005460 0.0e+00 1375.5 865 78.7
Phvul.006G022400 Phaseolus vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1375.5 865 78.7
arahy.Tifrunner.gnm1.ann1.S01VYL Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1373.6 869 78.0
Psat5g185680 Pisum sativum HOM05D004503 ORTHO05D005460 0.0e+00 1373.2 874 78.6
arahy.Tifrunner.gnm1.ann1.96CX7H Arachis hypogaea HOM05D004503 ORTHO05D005460 0.0e+00 1369.4 869 77.7
CANSAT64G0633 Cannabis sativa HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 868 78.6
HanXRQChr13g0387771 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1368.6 865 77.8
Prupe.3G176600 Prunus persica HOM05D004503 ORTHO05D005460 0.0e+00 1365.9 868 77.5
CsaV3_4G031940 Cucumis sativus L. HOM05D004503 ORTHO05D005460 0.0e+00 1365.5 868 78.1
Lalb_Chr07g0191281 Lupinus albus HOM05D004503 ORTHO05D005460 0.0e+00 1365.5 865 78.2
Lj6g0014906 Lotus japonicus HOM05D004503 ORTHO05D005460 0.0e+00 1364.7 872 77.8
MELO3C026971.2 Cucumis melo HOM05D004503 ORTHO05D005460 0.0e+00 1364.0 868 77.9
EL10Ac1g01630 Beta vulgaris HOM05D004503 ORTHO05D005460 0.0e+00 1363.2 869 76.9
Lsat_1_v5_gn_8_31680 Lactuca sativa HOM05D004503 ORTHO05D005460 0.0e+00 1358.6 862 77.0
QL01p017640 Quercus lobata HOM05D004503 ORTHO05D005460 0.0e+00 1357.4 915 75.2
AUR62026613 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1355.5 868 77.2
Sed0003027 Sechium edule HOM05D004503 ORTHO05D005460 0.0e+00 1354.7 868 77.2
MD17G1136200 Malus domestica HOM05D004503 ORTHO05D005460 0.0e+00 1354.0 860 77.6
CiPaw.13G152400 Carya illinoinensis HOM05D004503 ORTHO05D005460 0.0e+00 1351.3 874 78.6
Sabra05G0155000 Salix brachista HOM05D004503 ORTHO05D005460 0.0e+00 1350.5 896 75.6
Duzib138G1342 Durio zibethinus HOM05D004503 ORTHO05D005460 0.0e+00 1350.1 868 77.8
Atru.chr6.2055 Acer truncatum HOM05D004503 ORTHO05D005460 0.0e+00 1349.0 866 77.6
ClCG11G016490 Citrullus lanatus HOM05D004503 ORTHO05D005460 0.0e+00 1349.0 868 77.5
Nn4g24335 Nelumbo nucifera HOM05D004503 ORTHO05D005460 0.0e+00 1348.6 865 77.7
PGR042G1526 Punica granatum HOM05D004503 ORTHO05D005460 0.0e+00 1348.2 871 77.3
CSS0024997 Camellia sinensis var. sinensis HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 880 77.2
Sc09g0009430 Simmondsia chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1347.8 869 77.1
Potri.005G204400 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1344.7 869 76.9
AUR62034921 Chenopodium quinoa HOM05D004503 ORTHO05D005460 0.0e+00 1342.4 868 76.3
Ciclev10030701m.g Citrus clementina HOM05D004503 ORTHO05D005460 0.0e+00 1338.9 865 77.0
Rhsim12G0009900 Rhododendron simsii HOM05D004503 ORTHO05D005460 0.0e+00 1334.3 895 75.6
Manes.02G088300 Manihot esculenta HOM05D004503 ORTHO05D005460 0.0e+00 1330.1 870 76.9
ECA233G4498 Erigeron canadensis HOM05D004503 ORTHO05D005460 0.0e+00 1329.7 868 75.8
Cpa.g.sc648.4 Carica papaya HOM05D004503 ORTHO05D005460 0.0e+00 1327.4 873 76.3
Hund26670 Selenicereus undatus HOM05D004503 ORTHO05D005460 0.0e+00 1325.5 947 70.9
THA.LOC104826541 Tarenaya hassleriana HOM05D004503 ORTHO05D005460 0.0e+00 1320.4 887 74.2
Aqoxy1G01732 Aquilegia oxysepala HOM05D004503 ORTHO05D005460 0.0e+00 1319.7 865 74.9
RcHm_v2.0_Chr2g0152001 Rosa chinensis HOM05D004503 ORTHO05D005460 0.0e+00 1318.9 884 73.9
Potri.002G057800 Populus trichocarpa HOM05D004503 ORTHO05D005460 0.0e+00 1318.5 870 76.1
PSO675G5402 Papaver somniferum HOM05D004503 ORTHO05D005460 0.0e+00 1312.0 865 75.8
HPP92_024264 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1312.0 863 74.4
FAN05G2445 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1305.0 884 73.4
FAN02G3131 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1303.9 920 71.3
FvH4_6g38590 Fragaria vesca HOM05D004503 ORTHO05D005460 0.0e+00 1299.3 884 73.2
FAN09G1308 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1296.6 920 70.9
FAN14G5858 Fragaria x ananassa HOM05D004503 ORTHO05D005460 0.0e+00 1296.6 884 73.1
HanXRQChr13g0403751 Helianthus annuus HOM05D004503 ORTHO05D005460 0.0e+00 1288.5 808 77.6
Aa31LG5G23690 Aethionema arabicum HOM05D004503 ORTHO05D005460 0.0e+00 1276.5 886 71.9
BcaC01g05572 Brassica carinata HOM05D004503 ORTHO05D005460 0.0e+00 1257.7 888 71.2
C03p24750 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1257.7 888 71.2
BolC3t14864H Brassica oleracea HOM05D004503 ORTHO05D005460 0.0e+00 1257.7 888 71.2
Thhalv10016232m.g Eutrema salsugineum HOM05D004503 ORTHO05D005460 0.0e+00 1256.5 888 71.1
A03p21010 Brassica napus HOM05D004503 ORTHO05D005460 0.0e+00 1255.4 888 70.9
BraA03t11340Z Brassica rapa HOM05D004503 ORTHO05D005460 0.0e+00 1255.4 888 70.9
Sp4g20340 Schrenkiella parvula HOM05D004503 ORTHO05D005460 0.0e+00 1253.8 888 70.8
Carub.0004s1999 Capsella rubella HOM05D004503 ORTHO05D005460 0.0e+00 1250.7 888 70.5
HPP92_024256 Vanilla planifolia HOM05D004503 ORTHO05D005460 0.0e+00 1250.0 862 71.7
AL4G35000 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 0.0e+00 1248.4 888 70.9
CARHR132590 Cardamine hirsuta HOM05D004503 ORTHO05D005460 0.0e+00 1243.8 888 69.9
AT2G38020 Arabidopsis thaliana HOM05D004503 ORTHO05D005460 0.0e+00 1241.9 888 70.7
SEGI_01586 Sequoiadendron giganteum HOM05D004503 ORTHO05D005460 0.0e+00 1238.8 859 70.0
Gohir.D07G189800 Gossypium hirsutum HOM05D004503 ORTHO05D005460 0.0e+00 1238.4 785 78.6
ATR0772G123 Amborella trichopoda HOM05D004503 ORTHO05D005460 0.0e+00 1214.1 877 68.4
Eucgr.A02017 Eucalyptus grandis HOM05D004503 ORTHO05D005460 0.0e+00 1149.8 749 75.3
DCAR_013322 Daucus carota HOM05D004503 ORTHO05D005460 0.0e+00 1144.0 861 68.8
Ah.05g168350 Amaranthus hybridus HOM05D004503 ORTHO05D005460 0.0e+00 1130.9 868 66.9
Mapoly0052s0038 Marchantia polymorpha HOM05D004503 ORTHO05D005460 0.0e+00 1094.0 864 61.9
Pp3c13_19740 Physcomitrium patens HOM05D004503 ORTHO05D005460 0.0e+00 1078.9 856 61.6
Haze_23205 Corylus avellana HOM05D004503 ORTHO05D005460 0.0e+00 1078.2 1141 54.3
Cfa009838 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.6e-310 1068.5 874 66.0
Os01g0666800 Oryza sativa ssp. japonica HOM05D004503 ORTHO05D005460 1.0e-301 1040.0 910 60.7
SMO358G0621 Selaginella moellendorffii HOM05D004503 ORTHO05D005460 1.8e-295 1019.2 860 58.1
MBI10_g21107_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 3.3e-281 971.8 876 62.0
BcaB01g03734 Brassica carinata HOM05D004503 ORTHO05D005460 4.2e-276 954.9 722 69.0
PSO063G7036 Papaver somniferum HOM05D004503 ORTHO05D005460 2.9e-269 932.2 645 71.9
BcaNung06337 Brassica carinata HOM05D004503 ORTHO05D005460 3.0e-266 922.2 828 59.4
vmacro23147 Vaccinium macrocarpon HOM05D004503 ORTHO05D005460 4.0e-266 921.8 726 66.7
SHI12362 Sapria himalayana HOM05D004503 ORTHO05D005460 1.6e-230 803.5 625 65.4
BcaC01g05574 Brassica carinata HOM05D004503 ORTHO05D005460 1.7e-221 773.5 707 58.8
Nitab4.5_0027860g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 9.9e-217 757.7 495 75.4
Oeu020048.5 Olea europaea HOM05D004503 ORTHO05D005460 1.3e-211 740.7 469 80.6
CDE04G0954 Ceratophyllum demersum HOM05D004503 ORTHO05D005460 3.3e-204 716.1 433 82.0
PGSC0003DMG400017305 Solanum tuberosum HOM05D004503 ORTHO05D005460 5.5e-199 698.7 403 82.1
Oeu010987.1 Olea europaea HOM05D004503 ORTHO05D005460 1.6e-187 660.6 355 86.5
Nitab4.5_0010124g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 2.8e-179 633.3 369 87.0
MBI10_g05864_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.6e-177 626.7 624 54.8
CBR_g46726 Chara braunii HOM05D004503 ORTHO05D005460 1.2e-174 617.8 865 40.6
TPR.G25270 Trifolium pratense HOM05D004503 ORTHO05D005460 7.4e-172 608.6 341 88.0
PRCOL_00002554 Prasinoderma coloniale HOM05D004503 ORTHO05D005460 2.2e-160 570.5 875 37.7
Cfa025981 Carpinus fangiana HOM05D004503 ORTHO05D005460 2.3e-136 490.7 847 35.4
TPR.G16790 Trifolium pratense HOM05D004503 ORTHO05D005460 3.6e-118 430.3 453 52.5
Cre03.g199311 Chlamydomonas reinhardtii HOM05D004503 ORTHO05D005460 1.7e-115 421.4 1027 30.3
AagrBONN_evm.TU.Sc2ySwM_368.858 Anthoceros agrestis HOM05D004503 ORTHO05D005460 8.3e-115 419.1 327 59.3
AL3G43330 Arabidopsis lyrata HOM05D004503 ORTHO05D005460 1.1e-111 408.7 377 60.5
BcaB02g09224 Brassica carinata HOM05D004503 ORTHO05D005460 2.5e-111 407.5 616 42.7
AagrBONN_evm.TU.Sc2ySwM_368.859 Anthoceros agrestis HOM05D004503 ORTHO05D005460 5.6e-103 379.8 332 56.6
MBI10_g02225_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 2.4e-93 347.8 260 64.2
AagrBONN_evm.TU.Sc2ySwM_117.438 Anthoceros agrestis HOM05D004503 ORTHO05D005460 3.9e-80 303.9 320 50.9
PGR042G2164 Punica granatum HOM05D004503 ORTHO05D005460 1.3e-78 298.9 165 87.9
Actinidia25072 Actinidia chinensis HOM05D004503 ORTHO05D005460 8.2e-78 296.2 238 63.0
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 3.5e-73 280.8 241 61.0
BcaB01g03733 Brassica carinata HOM05D004503 ORTHO05D005460 8.5e-67 259.6 157 74.5
TPR.G20801 Trifolium pratense HOM05D004503 ORTHO05D005460 1.9e-42 178.7 97 84.5
Lsat_1_v5_gn_8_146460 Lactuca sativa HOM05D004503 ORTHO05D005460 2.8e-38 164.9 101 78.2
Lsat_1_v5_gn_2_4101 Lactuca sativa HOM05D004503 ORTHO05D005460 9.1e-37 159.8 108 69.4
Lsat_1_v5_gn_3_97321 Lactuca sativa HOM05D004503 ORTHO05D005460 2.1e-33 148.7 107 70.1
Lsat_1_v5_gn_9_81860 Lactuca sativa HOM05D004503 ORTHO05D005460 1.8e-32 145.6 98 72.4
Nitab4.5_0010753g0030 Nicotiana tabacum HOM05D004503 ORTHO05D005460 1.8e-32 145.6 116 59.5
FvH4_6g38010 Fragaria vesca HOM05D004503 ORTHO05D005460 1.2e-31 142.9 129 61.2
Lsat_1_v5_gn_1_120320 Lactuca sativa HOM05D004503 ORTHO05D005460 7.5e-31 140.2 98 69.4
Lsat_1_v5_gn_9_107141 Lactuca sativa HOM05D004503 ORTHO05D005460 3.7e-30 137.9 85 76.5
Lsat_1_v5_gn_9_102961 Lactuca sativa HOM05D004503 ORTHO05D005460 1.1e-29 136.3 95 69.5
Lsat_1_v5_gn_4_94880 Lactuca sativa HOM05D001336 ORTHO05D001211 7.0e-29 133.7 87 72.4
TPR.G6024 Trifolium pratense HOM05D004503 ORTHO05D005460 5.0e-27 127.5 67 85.1
Lsat_1_v5_gn_5_109060 Lactuca sativa HOM05D004503 ORTHO05D005460 3.3e-26 124.8 106 63.2
MBI10_g02227_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 4.2e-26 124.4 125 58.4
Nitab4.5_0010753g0010 Nicotiana tabacum HOM05D004503 ORTHO05D005460 4.2e-26 124.4 208 42.8
Lsat_1_v5_gn_2_120 Lactuca sativa HOM05D003203 ORTHO05D003526 8.0e-25 120.2 113 55.8
Lsat_1_v5_gn_6_107780 Lactuca sativa HOM05D004503 ORTHO05D003526 2.3e-24 118.6 96 63.5
Lsat_1_v5_gn_2_105761 Lactuca sativa HOM05D001000 ORTHO05D001896 3.0e-24 118.2 108 56.5
Lsat_1_v5_gn_0_13460 Lactuca sativa HOM05D003536 ORTHO05D004233 6.8e-24 117.1 100 61.0
Lsat_1_v5_gn_4_100901 Lactuca sativa HOM05D004503 ORTHO05D005460 8.9e-24 116.7 68 77.9
Lsat_1_v5_gn_1_93381 Lactuca sativa HOM05D003203 ORTHO05D003526 4.4e-23 114.4 103 59.2
Lsat_1_v5_gn_2_36800 Lactuca sativa HOM05D004503 ORTHO05D005460 8.3e-22 110.2 61 80.3
Lsat_1_v5_gn_8_98160 Lactuca sativa HOM05D004503 ORTHO05D005460 2.9e-19 101.7 96 56.2
Lsat_1_v5_gn_8_75300 Lactuca sativa HOM05D004503 ORTHO05D005460 1.5e-18 99.4 123 47.2
Lsat_1_v5_gn_2_51260 Lactuca sativa HOM05D001336 ORTHO05D001211 3.6e-17 94.7 52 80.8
Lsat_1_v5_gn_8_84700 Lactuca sativa HOM05D004503 ORTHO05D005460 1.0e-16 93.2 52 78.8
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.8e-16 92.4 197 32.0
TPR.G24652 Trifolium pratense HOM05D004503 ORTHO05D005460 2.3e-16 92.0 54 87.0
Lsat_1_v5_gn_8_13240 Lactuca sativa HOM05D004503 ORTHO05D005460 2.2e-14 85.5 82 56.1
SalBow8G3309 Salvia bowleyana HOM05D004503 ORTHO05D005460 7.0e-13 80.5 49 83.7
C04p09630 Brassica napus HOM05D004503 ORTHO05D005460 2.7e-12 78.6 87 51.7
BolC4t22570H Brassica oleracea HOM05D004503 ORTHO05D005460 2.7e-12 78.6 87 51.7
Lsat_1_v5_gn_4_85140 Lactuca sativa HOM05D003203 ORTHO05D003526 1.6e-09 69.3 37 83.8
Rhsim08G0005700 Rhododendron simsii HOM05D004503 ORTHO05D037450 4.7e-09 67.8 85 50.6
Lsat_1_v5_gn_8_136521 Lactuca sativa HOM05D004503 ORTHO05D000404 6.2e-09 67.4 80 48.8
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 3.1e-08 65.1 39 79.5
Rhsim07G0116000 Rhododendron simsii HOM05D000382 ORTHO05D037450 6.4e-06 57.4 146 34.9
MBI10_g02226_MAGBIO Magnolia biondii HOM05D004503 ORTHO05D005460 8.3e-06 57.0 33 81.8


User provided reference genes

Program Settings