Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold70G23376 Striga asiatica HOM05D005043 ORTHO05D006182 3.9e-224 781.2 407 100.0
Migut.M00727 Erythranthe guttata HOM05D005043 ORTHO05D006182 4.7e-153 545.0 408 68.9
MSTRG.12865 Avicennia marina HOM05D005043 ORTHO05D006182 1.7e-142 510.0 344 74.7
Oeu031030.1 Olea europaea HOM05D005043 ORTHO05D006182 9.6e-138 494.2 364 69.2
SalBow8G1024 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.3e-137 493.8 374 69.3
SalBow1G3547 Salvia bowleyana HOM05D005043 ORTHO05D006182 1.9e-125 453.4 374 65.0
Dinv18365 Davidia involucrata HOM05D005043 ORTHO05D006182 5.5e-125 451.8 343 68.5
Prupe.4G164600 Prunus persica HOM05D005043 ORTHO05D006182 2.3e-123 446.4 358 64.8
Ciclev10023741m.g Citrus clementina HOM05D005043 ORTHO05D006182 5.1e-123 445.3 351 64.7
Lj1C829T6 Lonicera japonica HOM05D005043 ORTHO05D006182 5.1e-123 445.3 339 67.6
TAR636G1993 Trochodendron aralioides HOM05D005043 ORTHO05D006182 5.1e-123 445.3 358 65.4
PGR083G1657 Punica granatum HOM05D005043 ORTHO05D006182 6.7e-123 444.9 356 65.7
Cc05_g11070 Coffea canephora HOM05D005043 ORTHO05D006182 7.4e-122 441.4 357 64.4
Thecc.07G117100 Theobroma cacao HOM05D005043 ORTHO05D006182 3.7e-121 439.1 339 65.5
GSVIVG01014196001 Vitis vinifera HOM05D005043 ORTHO05D006182 1.4e-120 437.2 363 63.6
Gohir.D01G042722 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.8e-120 436.8 345 64.9
Gorai.002G054600 Gossypium raimondii HOM05D005043 ORTHO05D006182 1.8e-120 436.8 345 64.9
Atru.chr2.2132 Acer truncatum HOM05D005043 ORTHO05D006182 4.1e-120 435.6 338 64.8
Potri.001G390500 Populus trichocarpa HOM05D005043 ORTHO05D006182 1.2e-119 434.1 345 64.9
Manes.15G094900 Manihot esculenta HOM05D005043 ORTHO05D006182 4.5e-119 432.2 353 63.7
COL.COLO4_17542 Corchorus olitorius HOM05D005043 ORTHO05D006182 5.9e-119 431.8 341 65.7
Hma1.2p1_0290F.1_g114850 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 7.7e-119 431.4 361 63.2
Gohir.A01G054300 Gossypium hirsutum HOM05D005043 ORTHO05D006182 1.7e-118 430.3 345 63.8
Peaxi162Scf00111g01457 Petunia axillaris HOM05D005043 ORTHO05D006182 1.7e-118 430.3 355 61.7
HanXRQChr13g0390281 Helianthus annuus HOM05D005043 ORTHO05D006182 2.2e-118 429.9 337 65.0
MD11G1263900 Malus domestica HOM05D005043 ORTHO05D006182 2.2e-118 429.9 360 62.5
Sopen07g030670 Solanum pennellii HOM05D005043 ORTHO05D006182 2.9e-118 429.5 352 62.8
BolC3t17001H Brassica oleracea HOM05D005043 ORTHO05D006182 1.9e-117 426.8 357 63.3
Cpa.g.sc77.9 Carica papaya HOM05D005043 ORTHO05D006182 1.9e-117 426.8 342 65.5
HanXRQChr12g0362951 Helianthus annuus HOM05D005043 ORTHO05D006182 1.9e-117 426.8 338 65.1
Duzib213G0837 Durio zibethinus HOM05D005043 ORTHO05D006182 3.2e-117 426.0 348 63.5
ECA240G3232 Erigeron canadensis HOM05D005043 ORTHO05D006182 3.2e-117 426.0 337 63.2
CAN.G375.16 Capsicum annuum HOM05D005043 ORTHO05D006182 4.2e-117 425.6 352 63.1
Ca_26224_v3 Cicer arietinum L. HOM05D005043 ORTHO05D006182 5.5e-117 425.2 347 64.3
A05p34520 Brassica napus HOM05D005043 ORTHO05D006182 1.6e-116 423.7 374 60.2
BraA05t22272Z Brassica rapa HOM05D005043 ORTHO05D006182 1.6e-116 423.7 374 60.2
CiPaw.11G160200 Carya illinoinensis HOM05D005043 ORTHO05D006182 2.1e-116 423.3 343 64.7
Sabra16G0255900 Salix brachista HOM05D005043 ORTHO05D006182 2.1e-116 423.3 345 63.5
BcaB06g29516 Brassica carinata HOM05D005043 ORTHO05D006182 3.6e-116 422.5 374 60.2
C03p47310 Brassica napus HOM05D005043 ORTHO05D006182 3.6e-116 422.5 357 62.5
PGSC0003DMG400007070 Solanum tuberosum HOM05D005043 ORTHO05D006182 4.6e-116 422.2 380 59.5
Nn7g37328 Nelumbo nucifera HOM05D005043 ORTHO05D006182 6.1e-116 421.8 380 59.2
Solyc07g062430.3 Solanum lycopersicum HOM05D005043 ORTHO05D006182 1.0e-115 421.0 352 61.6
CANSAT35G1445 Cannabis sativa HOM05D005043 ORTHO05D006182 2.3e-115 419.9 348 63.2
Sp3g13100 Schrenkiella parvula HOM05D005043 ORTHO05D006182 2.3e-115 419.9 374 60.2
TWI38G0078 Tripterygium wilfordii HOM05D005043 ORTHO05D006182 3.9e-115 419.1 341 63.0
Phvul.011G162300 Phaseolus vulgaris HOM05D005043 ORTHO05D006182 5.1e-115 418.7 344 63.4
BolC5t33915H Brassica oleracea HOM05D005043 ORTHO05D006182 6.7e-115 418.3 369 60.2
C05p52260 Brassica napus HOM05D005043 ORTHO05D006182 8.8e-115 417.9 375 60.0
BcaB06g25330 Brassica carinata HOM05D005043 ORTHO05D006182 1.1e-114 417.5 374 59.1
DCAR_017172 Daucus carota HOM05D005043 ORTHO05D006182 1.1e-114 417.5 342 63.5
RcHm_v2.0_Chr5g0030901 Rosa chinensis HOM05D005043 ORTHO05D006182 2.0e-114 416.8 351 60.1
Sed0006465 Sechium edule HOM05D005043 ORTHO05D006182 2.5e-114 416.4 345 63.5
THA.LOC104822566 Tarenaya hassleriana HOM05D005043 ORTHO05D006182 4.3e-114 415.6 359 61.3
A03p39040 Brassica napus HOM05D005043 ORTHO05D006182 7.4e-114 414.8 356 62.1
BraA03t13053Z Brassica rapa HOM05D005043 ORTHO05D006182 7.4e-114 414.8 356 62.1
Lsat_1_v5_gn_9_99860 Lactuca sativa HOM05D005043 ORTHO05D006182 7.4e-114 414.8 337 62.9
EL10Ac4g08345 Beta vulgaris HOM05D005043 ORTHO05D006182 1.7e-113 413.7 349 63.9
Medtr6g466500 Medicago truncatula HOM05D005043 ORTHO05D006182 1.7e-113 413.7 354 62.1
AL3G27210 Arabidopsis lyrata HOM05D005043 ORTHO05D006182 2.2e-113 413.3 376 58.8
CARHR089830 Cardamine hirsuta HOM05D005043 ORTHO05D006182 4.8e-113 412.1 378 58.7
Lalb_Chr03g0031161 Lupinus albus HOM05D005043 ORTHO05D006182 6.3e-113 411.8 349 61.9
CsaV3_4G033100 Cucumis sativus L. HOM05D005043 ORTHO05D006182 1.8e-112 410.2 365 60.3
Eucgr.F01242 Eucalyptus grandis HOM05D005043 ORTHO05D006182 3.1e-112 409.5 409 55.3
ClCG11G017440 Citrullus lanatus HOM05D005043 ORTHO05D006182 5.3e-112 408.7 372 59.1
Rhsim06G0208200 Rhododendron simsii HOM05D005043 ORTHO05D006182 9.1e-112 407.9 361 61.2
Carub.0003s1455 Capsella rubella HOM05D005043 ORTHO05D006182 2.0e-111 406.8 374 59.1
AT3G14890 Arabidopsis thaliana HOM05D005043 ORTHO05D006182 4.5e-111 405.6 375 57.9
arahy.Tifrunner.gnm1.ann1.NUK3H0 Arachis hypogaea HOM05D005043 ORTHO05D006182 1.3e-110 404.1 349 61.6
FAN21G3659 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.3e-110 404.1 340 62.6
FAN25G1853 Fragaria x ananassa HOM05D005043 ORTHO05D006182 1.7e-110 403.7 340 62.9
MBI06_g29324_MAGBIO Magnolia biondii HOM05D005043 ORTHO05D006182 1.7e-110 403.7 444 51.8
Aqoxy7G03872 Aquilegia oxysepala HOM05D005043 ORTHO05D006182 6.5e-110 401.7 340 61.5
Aa31LG8G2100 Aethionema arabicum HOM05D005043 ORTHO05D006182 1.1e-109 401.0 370 57.0
Thhalv10020510m.g Eutrema salsugineum HOM05D005043 ORTHO05D006182 2.5e-109 399.8 369 58.0
arahy.Tifrunner.gnm1.ann1.5E18AM Arachis hypogaea HOM05D005043 ORTHO05D006182 4.2e-109 399.1 355 60.3
FAN11G3478 Fragaria x ananassa HOM05D005043 ORTHO05D006182 4.2e-109 399.1 340 61.8
FvH4_3g18270 Fragaria vesca HOM05D005043 ORTHO05D006182 7.2e-109 398.3 340 61.8
FAN16G3394 Fragaria x ananassa HOM05D005043 ORTHO05D006182 3.6e-108 396.0 340 61.2
Haze_09322 Corylus avellana HOM05D005043 ORTHO05D006182 4.7e-108 395.6 375 59.5
PSO478G3490 Papaver somniferum HOM05D005043 ORTHO05D006182 1.4e-107 394.0 341 59.8
Glyma.12G157700 Glycine max HOM05D005043 ORTHO05D006182 3.0e-107 392.9 367 57.2
AUR62019576 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.5e-106 390.6 374 58.3
CDE09G1444 Ceratophyllum demersum HOM05D005043 ORTHO05D006182 7.4e-106 388.3 356 57.9
PSO782G2110 Papaver somniferum HOM05D005043 ORTHO05D006182 7.4e-106 388.3 355 59.4
VMungo1127G0129 Vigna mungo HOM05D005043 ORTHO05D006182 7.7e-103 378.3 432 50.5
PSO384G1010 Papaver somniferum HOM05D005043 ORTHO05D006182 1.3e-102 377.5 386 54.9
vmacro11941 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.7e-102 377.1 465 48.0
TPR.G12585 Trifolium pratense HOM05D005043 ORTHO05D006182 8.8e-99 364.8 319 60.2
Lj3g0009561 Lotus japonicus HOM05D005043 ORTHO05D006182 1.7e-94 350.5 312 60.3
unitig_749.g13541 Utricularia gibba HOM05D005043 ORTHO05D006182 2.5e-93 346.7 308 59.7
vmacro23467 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 1.2e-90 337.8 431 48.0
Lalb_Chr19g0133801 Lupinus albus HOM05D005043 ORTHO05D006182 2.8e-89 333.2 222 72.5
MELO3C025641.2 Cucumis melo HOM05D005043 ORTHO05D006182 5.3e-88 328.9 360 53.3
Glyma.06G229100 Glycine max HOM05D005043 ORTHO05D006182 3.8e-86 322.8 261 63.6
ATR1131G028 Amborella trichopoda HOM05D005043 ORTHO05D006182 1.4e-83 314.3 324 52.8
vmacro23385 Vaccinium macrocarpon HOM05D005043 ORTHO05D006182 5.7e-82 308.9 422 45.0
arahy.Tifrunner.gnm1.ann1.3VV2Z3 Arachis hypogaea HOM05D005043 ORTHO05D006182 6.3e-81 305.4 217 71.0
Os01g0737300 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 4.2e-77 292.7 306 53.6
Nitab4.5_0006953g0040 Nicotiana tabacum HOM05D005043 ORTHO05D006182 1.0e-70 271.6 352 44.3
Pp3c6_17140 Physcomitrium patens HOM05D005043 ORTHO05D006182 3.3e-69 266.5 375 42.7
arahy.Tifrunner.gnm1.ann1.5IY6XE Arachis hypogaea HOM05D005043 ORTHO05D006182 8.0e-68 261.9 185 71.4
HPP92_009836 Vanilla planifolia HOM05D005043 ORTHO05D006182 2.3e-67 260.4 183 67.8
CBR_g66772 Chara braunii HOM05D005043 ORTHO05D006182 2.9e-65 253.4 365 42.5
Sc16g0007590 Simmondsia chinensis HOM05D005043 ORTHO05D006182 6.4e-65 252.3 296 50.3
QL08p026231 Quercus lobata HOM05D005043 ORTHO05D006182 7.0e-64 248.8 151 77.5
Mapoly0056s0069 Marchantia polymorpha HOM05D005043 ORTHO05D006182 2.7e-63 246.9 338 43.2
AUR62042780 Chenopodium quinoa HOM05D005043 ORTHO05D006182 1.9e-61 240.7 142 77.5
Thecc.07G116500 Theobroma cacao HOM05D005043 ORTHO05D006182 6.2e-60 235.7 135 82.2
AagrBONN_evm.TU.Sc2ySwM_228.1872 Anthoceros agrestis HOM05D005043 ORTHO05D006182 8.0e-60 235.3 303 42.9
SMO137G0206 Selaginella moellendorffii HOM05D005043 ORTHO05D006182 6.8e-59 232.3 200 56.5
BcaNung07105 Brassica carinata HOM05D005043 ORTHO05D006182 1.3e-49 201.4 199 56.3
Ah.04g164250 Amaranthus hybridus HOM05D005043 ORTHO05D006182 2.7e-47 193.7 116 78.4
QL08p026221 Quercus lobata HOM05D005043 ORTHO05D006182 6.0e-47 192.6 188 59.6
Nitab4.5_0003565g0060 Nicotiana tabacum HOM05D005043 ORTHO05D006182 2.5e-45 187.2 340 35.9
AUR62042782 Chenopodium quinoa HOM05D005043 ORTHO05D006182 2.1e-39 167.5 227 48.0
MCO04G542 Micromonas commoda HOM05D005043 ORTHO05D006182 2.3e-30 137.5 195 38.5
Hma1.2p1_0113F.1_g055130 Hydrangea macrophylla HOM05D005043 ORTHO05D006182 1.3e-28 131.7 105 64.8
Psat3g077040 Pisum sativum HOM05D005043 ORTHO05D006182 2.4e-27 127.5 129 52.7
CSS0038261 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 5.8e-26 122.9 94 66.0
Cre09.g388726 Chlamydomonas reinhardtii HOM05D005043 ORTHO05D006182 8.4e-25 119.0 226 34.1
SHI37131 Sapria himalayana HOM05D005043 ORTHO05D006182 2.7e-23 114.0 65 81.5
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 4.6e-23 113.2 91 65.9
ECA240G0297 Erigeron canadensis HOM05D005043 ORTHO05D006182 1.4e-19 101.7 119 50.4
CSS0039124 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 5.3e-19 99.8 72 69.4
PSO782G5034 Papaver somniferum HOM05D005043 ORTHO05D006182 5.3e-19 99.8 101 54.5
Medtr6g052000 Medicago truncatula HOM05D005043 ORTHO05D006182 6.9e-19 99.4 90 60.0
PRCOL_00001017 Prasinoderma coloniale HOM05D005043 ORTHO05D006182 6.9e-19 99.4 174 33.3
PSO478G1721 Papaver somniferum HOM05D005043 ORTHO05D006182 1.2e-18 98.6 102 52.0
Hund10554 Selenicereus undatus HOM05D005043 ORTHO05D006182 1.3e-17 95.1 90 57.8
Psat3g076960 Pisum sativum HOM05D005043 ORTHO05D006182 1.1e-16 92.0 81 60.5
RcHm_v2.0_Chr5g0030891 Rosa chinensis HOM05D005043 ORTHO05D006182 3.2e-16 90.5 88 58.0
SEGI_37980 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 7.1e-16 89.4 92 48.9
Zm00001eb153930 Zea mays HOM05D005043 ORTHO05D006182 4.6e-15 86.7 186 34.9
Psat3g076920 Pisum sativum HOM05D005043 ORTHO05D006182 6.0e-15 86.3 84 57.1
Psat3g076840 Pisum sativum HOM05D005043 ORTHO05D006182 3.0e-14 84.0 84 56.0
Medtr6g052005 Medicago truncatula HOM05D005043 ORTHO05D006182 1.5e-13 81.6 44 84.1
SEGI_01303 Sequoiadendron giganteum HOM05D005043 ORTHO05D006182 2.5e-13 80.9 55 67.3
FvH4_4g05840 Fragaria vesca HOM05D005043 ORTHO05D006182 5.7e-13 79.7 144 37.5
Actinidia09808 Actinidia chinensis HOM05D005043 ORTHO05D006182 1.6e-12 78.2 181 35.9
CSS0012296 Camellia sinensis var. sinensis HOM05D005043 ORTHO05D006182 1.8e-11 74.7 36 91.7
TPR.G17654 Trifolium pratense HOM05D005043 ORTHO05D006182 5.3e-11 73.2 49 69.4
SMO175G0006 Selaginella moellendorffii HOM05D017119 ORTHO05D006182 1.5e-10 71.6 238 29.0
arahy.Tifrunner.gnm1.ann1.SEI0XU Arachis hypogaea HOM05D000735 ORTHO05D000838 2.6e-10 70.9 56 60.7
Medtr6g464930 Medicago truncatula HOM05D005043 ORTHO05D006182 3.2e-08 63.9 47 59.6
Manes.05G087700 Manihot esculenta HOM05D001448 ORTHO05D005781 6.1e-07 59.7 95 38.9
CDE09G1103 Ceratophyllum demersum HOM05D001448 ORTHO05D005781 1.8e-06 58.2 81 43.2
Os01g0737401 Oryza sativa ssp. japonica HOM05D005043 ORTHO05D006182 1.8e-06 58.2 31 83.9
Thhalv10016190m.g Eutrema salsugineum HOM05D001448 ORTHO05D005781 5.1e-06 56.6 80 41.2
HanXRQChr10g0281131 Helianthus annuus HOM05D001448 ORTHO05D005781 5.1e-06 56.6 87 40.2
Rhsim01G0266300 Rhododendron simsii HOM05D001448 ORTHO05D005781 5.1e-06 56.6 80 42.5
Thecc.01G262000 Theobroma cacao HOM05D001448 ORTHO05D005781 5.1e-06 56.6 93 38.7
RcHm_v2.0_Chr1g0352751 Rosa chinensis HOM05D005043 ORTHO05D006182 6.7e-06 56.2 41 53.7
THA.LOC104800882 Tarenaya hassleriana HOM05D001448 ORTHO05D005781 6.7e-06 56.2 98 37.8
CARHR124940 Cardamine hirsuta HOM05D001448 ORTHO05D005781 8.7e-06 55.8 79 38.0
Nitab4.5_0000086g0180 Nicotiana tabacum HOM05D001448 ORTHO05D005781 8.7e-06 55.8 90 38.9
PSO017G5465 Papaver somniferum HOM05D001448 ORTHO05D005781 8.7e-06 55.8 87 39.1
PSO063G1607 Papaver somniferum HOM05D001448 ORTHO05D005781 8.7e-06 55.8 87 39.1


User provided reference genes

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