Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold62G21434 Striga asiatica HOM05D003391 ORTHO05D005563 0.0e+00 1819.7 962 100.0
Migut.F02007 Erythranthe guttata HOM05D003391 ORTHO05D005563 0.0e+00 1370.5 919 81.0
MSTRG.27454 Avicennia marina HOM05D003391 ORTHO05D005563 0.0e+00 1361.3 919 80.5
SalBow4G0334 Salvia bowleyana HOM05D003391 ORTHO05D005563 0.0e+00 1356.7 913 81.8
MSTRG.9187 Avicennia marina HOM05D003391 ORTHO05D005563 0.0e+00 1346.6 919 80.0
Migut.F01784 Erythranthe guttata HOM05D003391 ORTHO05D005563 0.0e+00 1316.2 921 78.1
Sopen04g019460 Solanum pennellii HOM05D003391 ORTHO05D005563 0.0e+00 1261.9 921 74.6
Solyc04g049490.3 Solanum lycopersicum HOM05D003391 ORTHO05D005563 0.0e+00 1260.7 921 74.5
GSVIVG01016094001 Vitis vinifera HOM05D003391 ORTHO05D005563 0.0e+00 1259.6 918 75.9
Cc06_g14340 Coffea canephora HOM05D003391 ORTHO05D005563 0.0e+00 1255.7 918 75.9
TAR626G0891 Trochodendron aralioides HOM05D003391 ORTHO05D005563 0.0e+00 1247.6 914 74.7
MD09G1135000 Malus domestica HOM05D003391 ORTHO05D005563 0.0e+00 1244.2 917 74.3
arahy.Tifrunner.gnm1.ann1.635YAA Arachis hypogaea HOM05D003391 ORTHO05D005563 0.0e+00 1243.0 913 73.5
CAN.G466.12 Capsicum annuum HOM05D003391 ORTHO05D005563 0.0e+00 1241.5 916 73.7
TPR.G10474 Trifolium pratense HOM05D003391 ORTHO05D005563 0.0e+00 1239.9 913 73.1
Gohir.D08G181000 Gossypium hirsutum HOM05D003391 ORTHO05D005563 0.0e+00 1239.6 916 73.4
CANSAT64G0651 Cannabis sativa HOM05D003391 ORTHO05D005563 0.0e+00 1238.4 912 73.0
Gorai.004G190000 Gossypium raimondii HOM05D003391 ORTHO05D005563 0.0e+00 1237.2 916 73.1
Medtr2g028270 Medicago truncatula HOM05D003391 ORTHO05D005563 0.0e+00 1235.3 913 72.5
Atru.chr13.1465 Acer truncatum HOM05D003391 ORTHO05D005563 0.0e+00 1234.9 914 73.4
QL04p065456 Quercus lobata HOM05D003391 ORTHO05D005563 0.0e+00 1234.6 914 73.1
Thecc.03G235800 Theobroma cacao HOM05D003391 ORTHO05D005563 0.0e+00 1233.8 915 73.4
Gohir.A08G160766 Gossypium hirsutum HOM05D003391 ORTHO05D005563 0.0e+00 1233.4 916 73.1
CAN.G998.14 Capsicum annuum HOM05D003391 ORTHO05D005563 0.0e+00 1233.0 916 73.1
Prupe.3G191700 Prunus persica HOM05D003391 ORTHO05D005563 0.0e+00 1233.0 915 74.0
Glyma.09G018300 Glycine max HOM05D003391 ORTHO05D005563 0.0e+00 1232.2 913 72.8
CsaV3_4G032190 Cucumis sativus L. HOM05D003391 ORTHO05D005563 0.0e+00 1231.9 915 73.0
Dinv10208 Davidia involucrata HOM05D003391 ORTHO05D005563 0.0e+00 1231.9 893 75.1
Nn7g37683 Nelumbo nucifera HOM05D003391 ORTHO05D005563 0.0e+00 1231.1 914 74.0
VMungo0540G0836 Vigna mungo HOM05D003391 ORTHO05D005563 0.0e+00 1230.3 913 72.9
EL10Ac9g21140 Beta vulgaris HOM05D003391 ORTHO05D005563 0.0e+00 1229.5 916 73.7
Hma1.2p1_0583F.1_g183000 Hydrangea macrophylla HOM05D003391 ORTHO05D005563 0.0e+00 1228.8 907 75.4
CiPaw.10G102000 Carya illinoinensis HOM05D003391 ORTHO05D005563 0.0e+00 1228.0 911 72.6
MELO3C026391.2 Cucumis melo HOM05D003391 ORTHO05D005563 0.0e+00 1228.0 915 72.8
vmacro13793 Vaccinium macrocarpon HOM05D003391 ORTHO05D005563 0.0e+00 1226.8 912 73.7
Phvul.006G134000 Phaseolus vulgaris HOM05D003391 ORTHO05D005563 0.0e+00 1225.7 913 72.6
Cfa018226 Carpinus fangiana HOM05D003391 ORTHO05D005563 0.0e+00 1224.5 913 73.9
Lalb_Chr18g0057621 Lupinus albus HOM05D003391 ORTHO05D005563 0.0e+00 1223.4 915 72.2
Aqoxy3G00251 Aquilegia oxysepala HOM05D003391 ORTHO05D005563 0.0e+00 1222.6 915 72.9
Glyma.15G124200 Glycine max HOM05D003391 ORTHO05D005563 0.0e+00 1222.6 913 72.3
RcHm_v2.0_Chr2g0154761 Rosa chinensis HOM05D003391 ORTHO05D005563 0.0e+00 1221.1 913 73.3
Lj6g0008612 Lotus japonicus HOM05D003391 ORTHO05D005563 0.0e+00 1220.7 913 72.2
Sed0012933 Sechium edule HOM05D003391 ORTHO05D005563 0.0e+00 1219.9 914 72.2
MD17G1124000 Malus domestica HOM05D003391 ORTHO05D005563 0.0e+00 1219.5 913 73.1
Duzib084G0647 Durio zibethinus HOM05D003391 ORTHO05D005563 0.0e+00 1218.8 919 72.4
PSO675G3205 Papaver somniferum HOM05D003391 ORTHO05D005563 0.0e+00 1216.8 914 72.5
PSO541G1880 Papaver somniferum HOM05D003391 ORTHO05D005563 0.0e+00 1216.4 920 73.4
CSS0020230 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 0.0e+00 1215.7 923 72.7
FvH4_6g40130 Fragaria vesca HOM05D003391 ORTHO05D005563 0.0e+00 1214.9 913 73.2
Manes.01G037700 Manihot esculenta HOM05D003391 ORTHO05D005563 0.0e+00 1214.5 912 72.1
FAN02G4219 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1213.7 914 73.0
PGR042G2316 Punica granatum HOM05D003391 ORTHO05D005563 0.0e+00 1213.0 915 71.7
TWI74G0249 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 0.0e+00 1212.6 913 72.3
FAN05G0705 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1209.5 915 73.1
FAN09G1714 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1209.1 915 73.0
TWI77G0821 Tripterygium wilfordii HOM05D003391 ORTHO05D005563 0.0e+00 1204.9 913 71.7
THA.LOC104809239 Tarenaya hassleriana HOM05D003391 ORTHO05D005563 0.0e+00 1203.7 913 72.3
HanXRQChr04g0122221 Helianthus annuus HOM05D003391 ORTHO05D005563 0.0e+00 1201.8 928 71.3
Cpa.g.sc122.39 Carica papaya HOM05D003391 ORTHO05D005563 0.0e+00 1201.4 916 73.1
Potri.016G023000 Populus trichocarpa HOM05D003391 ORTHO05D005563 0.0e+00 1199.1 913 71.3
CSS0023421 Camellia sinensis var. sinensis HOM05D003391 ORTHO05D005563 0.0e+00 1197.2 926 71.4
ECA236G2623 Erigeron canadensis HOM05D003391 ORTHO05D005563 0.0e+00 1194.9 943 69.9
Aa31LG10G3790 Aethionema arabicum HOM05D003391 ORTHO05D005563 0.0e+00 1192.2 914 71.2
Zm00001eb144220 Zea mays HOM05D003391 ORTHO05D005563 0.0e+00 1186.0 920 71.3
FAN14G1902 Fragaria x ananassa HOM05D003391 ORTHO05D005563 0.0e+00 1185.2 969 69.2
ATR1098G037 Amborella trichopoda HOM05D003391 ORTHO05D005563 0.0e+00 1183.3 918 70.9
Ca_11369_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 0.0e+00 1181.0 913 70.5
Ca_30786_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 0.0e+00 1181.0 913 70.5
MBI18_g28220_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 0.0e+00 1181.0 896 72.9
Duzib068G0467 Durio zibethinus HOM05D003391 ORTHO05D005563 0.0e+00 1173.7 916 71.0
Peaxi162Scf00072g00087 Petunia axillaris HOM05D003391 ORTHO05D005563 0.0e+00 1171.8 905 71.8
arahy.Tifrunner.gnm1.ann1.QTWQ8J Arachis hypogaea HOM05D003391 ORTHO05D005563 0.0e+00 1170.6 866 72.9
A05p20100 Brassica napus HOM05D003391 ORTHO05D005563 0.0e+00 1166.0 915 69.1
C05p33590 Brassica napus HOM05D003391 ORTHO05D005563 0.0e+00 1166.0 915 69.1
BcaB02g11154 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1164.8 913 69.1
unitig_899.g14436 Utricularia gibba HOM05D003391 ORTHO05D005563 0.0e+00 1164.1 903 72.2
Carub.0001s3957 Capsella rubella HOM05D003391 ORTHO05D005563 0.0e+00 1160.6 912 69.3
ECA240G2134 Erigeron canadensis HOM05D003391 ORTHO05D005563 0.0e+00 1160.6 917 68.5
AL1G58160 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 0.0e+00 1158.3 917 68.6
BcaC05g27411 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1156.7 913 68.8
AT1G50500 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 0.0e+00 1154.0 917 68.3
Nitab4.5_0007706g0020 Nicotiana tabacum HOM05D003391 ORTHO05D005563 0.0e+00 1153.3 901 71.1
Sabra16G0023000 Salix brachista HOM05D003391 ORTHO05D005563 0.0e+00 1149.8 912 69.0
Sabra16G0029200 Salix brachista HOM05D003391 ORTHO05D005563 0.0e+00 1149.8 912 69.0
AUR62022296 Chenopodium quinoa HOM05D003391 ORTHO05D005563 0.0e+00 1148.7 915 70.2
COL.COLO4_06714 Corchorus olitorius HOM05D003391 ORTHO05D005563 0.0e+00 1148.7 902 70.6
Sc24g0003350 Simmondsia chinensis HOM05D003391 ORTHO05D005563 0.0e+00 1148.7 835 73.7
AUR62023891 Chenopodium quinoa HOM05D003391 ORTHO05D005563 0.0e+00 1147.9 913 69.2
Sp1g37350 Schrenkiella parvula HOM05D003391 ORTHO05D005563 0.0e+00 1147.9 913 68.5
BcaC01g01234 Brassica carinata HOM05D003391 ORTHO05D005563 0.0e+00 1133.2 921 67.5
DCAR_003077 Daucus carota HOM05D003391 ORTHO05D005563 0.0e+00 1132.9 900 71.6
Oeu033843.4 Olea europaea HOM05D003391 ORTHO05D005563 0.0e+00 1128.6 941 68.3
HanXRQChr03g0093781 Helianthus annuus HOM05D003391 ORTHO05D005563 0.0e+00 1123.2 918 67.6
Lsat_1_v5_gn_7_7561 Lactuca sativa HOM05D003391 ORTHO05D005563 0.0e+00 1112.8 930 68.2
ClCG11G016680 Citrullus lanatus HOM05D003391 ORTHO05D005563 0.0e+00 1090.5 897 67.4
Eucgr.L01917 Eucalyptus grandis HOM05D003391 ORTHO05D005563 0.0e+00 1087.8 830 70.7
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 0.0e+00 1085.1 888 67.8
Eucgr.G02677 Eucalyptus grandis HOM05D003391 ORTHO05D005563 1.7e-305 1052.7 773 73.5
Atru.chr13.1440 Acer truncatum HOM05D003391 ORTHO05D005563 1.1e-301 1040.0 912 65.1
Haze_17876 Corylus avellana HOM05D003391 ORTHO05D005563 1.6e-300 1036.2 977 62.2
Lalb_Chr15g0088521 Lupinus albus HOM05D003391 ORTHO05D005563 1.8e-299 1032.7 799 70.1
CDE02G0628 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.0e-299 1031.9 756 73.3
Hund02122 Selenicereus undatus HOM05D003391 ORTHO05D005563 4.0e-299 1031.6 862 67.7
Nitab4.5_0000575g0140 Nicotiana tabacum HOM05D003391 ORTHO05D005563 2.6e-298 1028.9 890 66.0
C03p89680 Brassica napus HOM05D003391 ORTHO05D005563 7.0e-296 1020.8 939 61.8
Lj7A654G26 Lonicera japonica HOM05D003391 ORTHO05D005563 4.5e-287 991.5 798 70.1
CARHR040530 Cardamine hirsuta HOM05D003391 ORTHO05D005563 5.0e-286 988.0 773 69.3
Ah.01g004390 Amaranthus hybridus HOM05D003391 ORTHO05D005563 6.5e-286 987.6 913 62.9
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.7e-284 981.5 955 60.9
Mapoly0030s0152 Marchantia polymorpha HOM05D003391 ORTHO05D005563 5.7e-282 974.5 938 58.4
BraA05t20918Z Brassica rapa HOM05D003391 ORTHO05D005563 1.1e-280 970.3 931 60.4
BolC5t32086H Brassica oleracea HOM05D003391 ORTHO05D005563 5.4e-280 968.0 919 60.8
Thhalv10011301m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 4.3e-277 958.4 734 70.6
SMO196G0220 Selaginella moellendorffii HOM05D003391 ORTHO05D005563 1.4e-275 953.4 926 57.7
Oeu030440.3 Olea europaea HOM05D003391 ORTHO05D005563 9.8e-274 947.2 806 66.6
Actinidia37789 Actinidia chinensis HOM05D003391 ORTHO05D005563 1.0e-270 937.2 917 61.0
Pp3c8_8190 Physcomitrium patens HOM05D003391 ORTHO05D005563 8.9e-267 924.1 927 55.0
Pp3c24_4920 Physcomitrium patens HOM05D003391 ORTHO05D005563 2.7e-263 912.5 936 54.2
arahy.Tifrunner.gnm1.ann1.MM6MID Arachis hypogaea HOM05D003391 ORTHO05D005563 1.1e-261 907.1 935 57.6
Psat1g171000 Pisum sativum HOM05D003391 ORTHO05D005563 1.3e-238 830.5 628 70.4
CBR_g35042 Chara braunii HOM05D003391 ORTHO05D005563 3.3e-237 825.9 909 52.4
Lsat_1_v5_gn_3_133361 Lactuca sativa HOM05D003391 ORTHO05D005563 4.0e-235 818.9 908 55.1
AL1G58810 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.2e-210 737.6 855 52.2
HPP92_006006 Vanilla planifolia HOM05D003391 ORTHO05D005563 7.9e-207 724.9 575 70.4
AagrBONN_evm.TU.Sc2ySwM_228.283 Anthoceros agrestis HOM05D003391 ORTHO05D005563 4.5e-202 709.1 700 56.6
BolC3t21285H Brassica oleracea HOM05D003391 ORTHO05D005563 3.0e-198 696.4 933 48.4
BcaB04g17246 Brassica carinata HOM05D003391 ORTHO05D005563 5.7e-197 692.2 656 60.2
AL1G58840 Arabidopsis lyrata HOM05D003391 ORTHO05D005563 1.7e-193 680.6 866 49.2
Rhsim11G0087500 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.4e-192 677.6 493 74.8
Ciclev10029974m.g Citrus clementina HOM05D003391 ORTHO05D005563 3.1e-179 633.3 468 75.2
PGSC0003DMG401012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 2.8e-172 610.1 401 82.5
PGSC0003DMG402012873 Solanum tuberosum HOM05D003391 ORTHO05D005563 3.8e-169 599.7 494 66.6
PRCOL_00003915 Prasinoderma coloniale HOM05D003391 ORTHO05D005563 8.6e-161 572.0 851 40.0
SHI21342 Sapria himalayana HOM05D003391 ORTHO05D005563 1.8e-155 554.3 464 65.7
Os01g0906200 Oryza sativa ssp. japonica HOM05D003391 ORTHO05D005563 3.0e-153 547.0 474 62.7
Ca_00789_v3 Cicer arietinum L. HOM05D003391 ORTHO05D005563 1.9e-152 544.3 450 65.6
Ciclev10028552m.g Citrus clementina HOM05D003391 ORTHO05D005563 5.4e-147 526.2 456 64.3
MCO12G450 Micromonas commoda HOM05D003391 ORTHO05D005563 2.5e-128 464.2 866 36.3
SEGI_14368 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 9.0e-110 402.5 265 78.1
Psat1g171680 Pisum sativum HOM05D003391 ORTHO05D005563 1.3e-108 398.7 319 70.8
AT1G50970 Arabidopsis thaliana HOM05D003391 ORTHO05D005563 1.8e-102 378.3 405 55.1
Cre06.g259600 Chlamydomonas reinhardtii HOM05D003391 ORTHO05D005563 3.1e-102 377.5 897 30.5
HPP92_006005 Vanilla planifolia HOM05D003391 ORTHO05D005563 2.0e-77 295.0 330 53.6
SHI21339 Sapria himalayana HOM05D003391 ORTHO05D005563 1.8e-73 282.0 380 48.4
Dinv04581 Davidia involucrata HOM05D003391 ORTHO05D005563 1.6e-69 268.9 208 69.7
Actinidia03950 Actinidia chinensis HOM05D003391 ORTHO05D005563 3.1e-62 244.6 359 46.2
Lsat_1_v5_gn_6_88940 Lactuca sativa HOM05D003391 ORTHO05D019401 1.6e-61 242.3 181 72.9
Cfa021970 Carpinus fangiana HOM05D003391 ORTHO05D125001 1.3e-60 239.2 815 26.5
Lsat_1_v5_gn_8_87740 Lactuca sativa HOM05D003391 ORTHO05D019401 2.5e-59 235.0 196 69.4
SEGI_15776 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 7.2e-59 233.4 232 54.7
SEGI_03483 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 1.3e-55 222.6 210 59.0
Atru.chr7.1997 Acer truncatum HOM05D003391 ORTHO05D019401 1.6e-53 215.7 145 82.1
SGA_v2.0_scaffold48G17900 Striga asiatica HOM05D003391 ORTHO05D013251 1.7e-52 212.2 181 74.0
SEGI_21663 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 2.9e-44 184.9 184 57.1
Lalb_Chr15g0088511 Lupinus albus HOM05D003391 ORTHO05D019401 6.6e-44 183.7 116 83.6
CARHR040520 Cardamine hirsuta HOM05D003391 ORTHO05D005563 4.7e-42 177.6 171 59.1
CARHR041020 Cardamine hirsuta HOM05D003391 ORTHO05D013251 8.3e-39 166.8 189 49.7
SEGI_01209 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 3.0e-36 158.3 103 70.9
CAN.G5179.1 Capsicum annuum HOM05D003391 ORTHO05D005563 1.2e-34 152.9 167 55.1
Thhalv10012404m.g Eutrema salsugineum HOM05D003391 ORTHO05D005563 1.6e-34 152.5 147 59.2
SEGI_30207 Sequoiadendron giganteum HOM05D003391 ORTHO05D005563 3.6e-34 151.4 89 75.3
MBI18_g28219_MAGBIO Magnolia biondii HOM05D003391 ORTHO05D005563 2.6e-32 145.2 222 48.2
SEGI_03199 Sequoiadendron giganteum HOM05D003391 ORTHO05D019401 2.1e-29 135.6 92 77.2
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 1.4e-25 122.9 194 45.4
CARHR183160 Cardamine hirsuta HOM05D003391 ORTHO05D019401 2.3e-25 122.1 127 59.8
Oeu063006.1 Olea europaea HOM05D001351 ORTHO05D001203 9.6e-19 100.1 70 74.3
Manes.07G058173 Manihot esculenta HOM05D003391 ORTHO05D250310 3.1e-17 95.1 96 62.5
Manes.12G128950 Manihot esculenta HOM05D003391 ORTHO05D249565 3.1e-17 95.1 96 62.5
Sp1g37750 Schrenkiella parvula HOM05D003391 ORTHO05D372635 2.0e-16 92.4 127 49.6
Manes.13G081678 Manihot esculenta HOM05D003391 ORTHO05D250639 2.6e-16 92.0 96 61.5
Manes.08G058900 Manihot esculenta HOM05D003391 ORTHO05D250822 3.5e-13 81.6 86 60.5
A02p35070 Brassica napus HOM05D003391 ORTHO05D013251 6.0e-13 80.9 118 45.8
CARHR292060 Cardamine hirsuta HOM05D003391 ORTHO05D019401 6.0e-13 80.9 51 82.4
arahy.Tifrunner.gnm1.ann1.MF7AUF Arachis hypogaea HOM05D003391 ORTHO05D008505 3.9e-12 78.2 44 86.4
SGA_v2.0_scaffold94G28399 Striga asiatica HOM05D003391 ORTHO05D003123 3.3e-11 75.1 46 89.1
BcaB06g26412 Brassica carinata HOM05D000705 ORTHO05D013251 2.8e-10 72.0 60 60.0
BcaB07g33280 Brassica carinata HOM05D000705 ORTHO05D013251 1.8e-09 69.3 60 58.3
SHI21343 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-09 69.3 51 76.5
ECA246G3223 Erigeron canadensis HOM05D001124 ORTHO05D001004 3.1e-09 68.6 46 76.1
SalBow4G0084 Salvia bowleyana HOM05D000136 ORTHO05D000080 9.0e-09 67.0 48 68.8
arahy.Tifrunner.gnm1.ann1.TYEM29 Arachis hypogaea HOM05D003391 ORTHO05D021502 4.2e-06 58.2 49 61.2


User provided reference genes

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