Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 2.4e-151 538.9 288 100.0
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 1.1e-116 423.7 290 71.4
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 7.6e-113 411.0 289 69.6
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.0e-105 386.3 287 66.9
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 2.6e-105 386.0 286 66.4
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 2.5e-100 369.4 288 63.9
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 3.3e-100 369.0 293 62.8
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 4.3e-100 368.6 288 64.6
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 4.8e-99 365.2 288 63.2
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.1e-98 364.0 289 62.6
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.1e-98 364.0 289 62.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 2.4e-98 362.8 289 64.4
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 9.0e-98 360.9 290 64.1
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 9.9e-97 357.5 293 60.4
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 9.9e-97 357.5 288 68.1
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.3e-96 357.1 293 60.1
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 2.2e-96 356.3 286 66.4
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.8e-96 355.5 293 60.1
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 3.2e-95 352.4 292 61.6
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 3.2e-95 352.4 291 66.0
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.2e-95 352.4 292 65.8
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 3.2e-95 352.4 289 68.2
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 1.2e-94 350.5 320 57.2
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 3.5e-94 349.0 290 64.5
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 3.5e-94 349.0 294 62.2
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.0e-93 347.4 291 62.9
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.3e-93 347.1 291 65.6
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.8e-93 346.7 252 65.1
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 5.1e-93 345.1 245 65.3
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 5.1e-93 345.1 293 58.7
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 6.7e-93 344.7 290 60.7
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.1e-92 344.0 286 61.9
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 1.5e-92 343.6 306 57.2
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 2.5e-92 342.8 286 60.1
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 3.3e-92 342.4 298 64.1
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 3.3e-92 342.4 298 64.1
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 4.3e-92 342.0 296 59.8
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 4.3e-92 342.0 270 65.9
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 4.3e-92 342.0 292 59.2
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 4.3e-92 342.0 286 60.8
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 9.6e-92 340.9 300 65.0
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.6e-91 340.1 231 69.3
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 3.7e-91 339.0 291 58.8
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 1.4e-90 337.0 286 59.1
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 3.1e-90 335.9 294 64.3
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.1e-90 335.9 288 67.0
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 4.0e-90 335.5 292 58.9
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 5.3e-90 335.1 286 59.4
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 5.3e-90 335.1 305 55.1
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 6.9e-90 334.7 289 65.7
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 9.0e-90 334.3 285 58.9
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 1.2e-89 334.0 286 58.4
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.2e-89 334.0 289 63.7
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 2.0e-89 333.2 289 66.1
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 2.6e-89 332.8 290 59.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.4e-89 332.4 270 62.6
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 4.5e-89 332.0 272 60.7
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 5.8e-89 331.6 346 52.0
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 1.7e-88 330.1 289 65.1
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 2.2e-88 329.7 276 63.0
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 2.5e-87 326.2 253 65.6
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 2.5e-87 326.2 286 58.4
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 3.2e-87 325.9 284 58.1
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 4.2e-87 325.5 297 56.2
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 9.3e-87 324.3 294 56.1
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 1.6e-86 323.6 294 56.1
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.6e-86 323.6 285 62.1
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 2.1e-86 323.2 294 55.8
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 2.1e-86 323.2 294 55.8
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 2.1e-86 323.2 298 56.0
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 3.5e-86 322.4 289 56.4
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 3.5e-86 322.4 294 55.8
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 7.9e-86 321.2 275 59.6
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 7.9e-86 321.2 316 53.8
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 3.9e-85 318.9 298 56.0
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 3.9e-85 318.9 277 66.1
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 3.9e-85 318.9 274 60.2
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 5.1e-85 318.5 294 56.1
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 6.7e-85 318.2 297 55.9
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 1.1e-84 317.4 291 53.6
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 1.5e-84 317.0 297 53.9
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 1.5e-84 317.0 295 55.3
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 1.5e-84 317.0 261 60.9
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 1.9e-84 316.6 293 55.6
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 2.5e-84 316.2 288 58.3
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.6e-83 313.5 326 51.2
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 2.8e-83 312.8 283 54.4
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.1e-82 310.8 253 60.5
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.4e-82 309.7 297 57.6
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.3e-80 303.9 257 58.8
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-79 300.4 262 57.3
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 3.2e-79 299.3 227 61.2
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 2.7e-78 296.2 283 59.0
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 3.6e-78 295.8 257 56.0
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 2.3e-77 293.1 207 68.6
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 3.0e-77 292.7 291 51.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 6.7e-77 291.6 247 59.5
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 1.5e-76 290.4 221 65.2
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 4.3e-76 288.9 286 52.4
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.8e-75 286.2 221 65.2
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 5.3e-74 282.0 208 63.5
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.5e-73 278.9 213 62.9
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 1.7e-72 276.9 278 55.0
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 8.5e-72 274.6 241 57.7
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 5.5e-71 271.9 237 59.1
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.7e-68 261.9 294 49.7
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 2.4e-66 256.5 226 58.8
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 7.4e-60 235.0 279 45.9
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 2.8e-59 233.0 189 59.3
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 5.9e-57 225.3 163 69.9
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 1.0e-56 224.6 178 61.8
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 9.4e-55 218.0 216 53.2
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 2.3e-53 213.4 233 57.9
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 1.7e-51 207.2 201 53.2
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 2.2e-51 206.8 149 69.8
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.2e-51 206.8 203 58.6
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 2.8e-51 206.5 256 41.4
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 4.8e-51 205.7 239 47.7
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-49 201.1 226 49.6
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 4.5e-49 199.1 130 70.8
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 1.7e-48 197.2 274 42.7
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 7.2e-47 191.8 264 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 1.8e-45 187.2 252 39.7
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 5.7e-44 182.2 291 40.9
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 3.7e-43 179.5 122 65.6
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 1.2e-41 174.5 199 44.2
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 1.1e-39 167.9 115 67.8
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 5.5e-39 165.6 201 47.3
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 1.6e-38 164.1 170 52.9
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.8e-37 160.6 106 69.8
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 2.8e-30 136.7 219 40.2
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 2.3e-29 133.7 104 58.7
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 8.9e-29 131.7 251 35.5
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.7e-27 127.5 201 42.3
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.4e-26 123.6 84 69.0
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 1.2e-20 104.8 177 40.1
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 9.2e-18 95.1 304 31.6
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 1.2e-14 84.7 213 29.1
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.0e-08 65.1 84 65.5


User provided reference genes

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