Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 0.0e+00 1347.0 671 100.0
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 9.5e-292 1006.5 691 74.1
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 7.3e-268 927.2 738 66.8
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 2.1e-243 845.9 678 64.3
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 4.2e-239 831.6 692 62.7
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 2.0e-233 812.8 677 61.9
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 3.4e-233 812.0 689 62.1
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 5.9e-233 811.2 685 62.0
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 7.6e-233 810.8 670 63.1
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 1.4e-229 800.0 697 60.5
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 1.4e-229 800.0 674 61.4
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 1.1e-228 797.0 665 61.8
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 3.3e-228 795.4 672 60.9
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 7.4e-228 794.3 681 60.8
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 3.1e-226 788.9 683 60.3
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 2.6e-225 785.8 667 61.5
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 4.5e-225 785.0 685 58.5
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 1.0e-224 783.9 672 61.6
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 1.1e-223 780.4 677 60.3
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 8.8e-221 770.8 668 60.3
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 3.3e-220 768.8 670 58.7
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 1.3e-219 766.9 668 59.4
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 2.8e-219 765.8 670 59.0
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 4.8e-219 765.0 665 60.0
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 1.1e-218 763.8 674 59.8
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.4e-218 762.7 670 59.1
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 2.0e-217 759.6 692 57.5
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 3.8e-216 755.4 670 59.7
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 1.4e-215 753.4 674 59.8
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.4e-215 753.4 687 57.1
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.9e-215 753.1 683 58.6
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 7.2e-215 751.1 672 59.2
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 1.0e-213 747.3 684 58.0
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.9e-213 745.3 678 58.3
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 8.8e-213 744.2 681 58.0
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.5e-212 743.4 678 58.1
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 2.6e-212 742.7 676 57.5
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 7.4e-212 741.1 681 58.9
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 9.7e-212 740.7 680 56.3
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 2.8e-211 739.2 704 57.4
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 7.0e-210 734.6 699 56.7
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 5.9e-209 731.5 674 57.1
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 3.8e-208 728.8 722 54.7
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 8.8e-205 717.6 722 54.0
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 1.3e-203 713.8 837 48.7
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 5.9e-201 704.9 660 56.4
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 1.7e-200 703.4 603 60.5
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.9e-200 702.6 678 55.2
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 5.0e-200 701.8 686 55.0
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 9.4e-199 697.6 692 55.1
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 2.1e-198 696.4 674 55.6
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 2.7e-198 696.0 682 54.1
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 1.0e-197 694.1 674 55.6
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 6.8e-197 691.4 673 55.1
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 6.8e-197 691.4 673 55.1
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 6.8e-197 691.4 673 55.1
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 2.6e-196 689.5 673 54.7
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 4.4e-196 688.7 639 57.0
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 7.5e-196 688.0 691 54.1
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 2.7e-193 679.5 675 53.9
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 3.5e-193 679.1 683 54.5
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 4.5e-193 678.7 672 54.3
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 5.9e-193 678.3 684 53.5
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.9e-191 673.3 680 54.9
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 2.0e-188 663.3 609 57.6
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 2.6e-188 662.9 677 53.2
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 5.4e-186 655.2 601 58.2
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.2e-185 654.1 672 52.8
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 2.7e-185 652.9 624 56.6
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 1.2e-177 627.5 677 50.2
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 1.7e-176 623.6 672 52.8
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 3.4e-172 609.4 580 56.9
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 1.7e-171 607.1 669 51.0
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 4.9e-171 605.5 671 51.9
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 5.4e-170 602.1 614 53.4
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 3.0e-168 596.3 667 51.1
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 7.3e-167 591.7 667 51.4
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 2.8e-166 589.7 674 48.8
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 2.3e-165 586.6 675 50.1
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 8.3e-163 578.2 600 54.2
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 5.6e-159 565.5 675 49.0
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.1e-157 561.2 538 55.9
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 6.8e-157 558.5 671 48.0
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 5.4e-154 548.9 676 46.7
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 1.2e-153 547.7 675 46.2
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.1e-153 547.0 673 45.9
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 2.7e-153 546.6 639 46.8
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 9.6e-151 538.1 685 44.5
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.0e-148 530.4 503 55.1
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 4.4e-148 529.3 582 52.1
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 2.9e-147 526.6 767 43.2
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.1e-143 514.6 497 54.5
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 1.5e-140 504.2 523 52.6
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 5.8e-140 502.3 596 50.2
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.7e-131 474.2 685 42.5
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 7.1e-122 442.2 679 40.5
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.3e-120 438.0 674 40.1
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 1.5e-119 434.5 465 50.3
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 9.0e-117 425.2 660 42.7
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 3.4e-116 423.3 677 36.9
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 2.2e-110 404.1 568 43.7
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 9.4e-98 362.1 560 42.3
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 2.3e-96 357.5 458 43.2
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 3.2e-90 337.0 280 63.9
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.5e-87 328.2 220 72.3
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 6.3e-86 322.8 470 43.2
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.8e-85 321.2 521 39.7
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 2.5e-82 310.8 911 28.4
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.7e-78 298.1 280 56.1
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 4.8e-78 296.6 292 55.1
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 1.9e-74 284.6 420 42.1
Solyc01g068350.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 2.9e-67 260.8 169 74.6
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 6.8e-64 249.6 316 49.1
Peaxi162Scf00309g00016 Petunia axillaris HOM05D004944 ORTHO05D005989 1.1e-61 242.3 162 74.1
ATR0721G036 Amborella trichopoda HOM05D004944 ORTHO05D005989 1.6e-57 228.4 167 68.3
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 8.9e-56 222.6 186 61.3
CSS0047173 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 6.4e-54 216.5 143 74.1
vmacro13724 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 1.1e-53 215.7 135 80.7
Lj9C645T11 Lonicera japonica HOM05D004944 ORTHO05D005989 5.1e-51 206.8 163 66.9
AUR62002442 Chenopodium quinoa HOM05D004944 ORTHO05D005989 2.1e-49 201.4 174 56.9
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 3.6e-49 200.7 363 39.1
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 3.5e-44 184.1 142 64.1
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 3.9e-43 180.6 158 59.5
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.9e-43 180.6 175 56.6
HPP92_001442 Vanilla planifolia HOM05D004944 ORTHO05D005989 6.8e-40 169.9 142 62.7
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 1.2e-39 169.1 139 59.7
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 5.4e-37 160.2 668 25.7
CSS0009317 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.3e-35 155.6 143 56.6
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.9e-35 154.1 105 67.6
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 5.1e-35 153.7 121 58.7
Oeu006103.1 Olea europaea HOM05D004944 ORTHO05D005989 3.6e-33 147.5 142 57.0
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 4.8e-33 147.1 266 33.8
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 1.4e-29 135.6 163 46.0
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 7.9e-28 129.8 254 33.9
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 2.6e-23 114.8 286 32.2
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 1.7e-22 112.1 150 43.3
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 4.9e-22 110.5 90 65.6
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 6.4e-22 110.2 182 39.0
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 3.5e-20 104.4 92 52.2
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 2.3e-19 101.7 55 83.6
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 1.4e-16 92.4 55 74.5
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 5.3e-16 90.5 54 75.9
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 1.4e-13 82.4 152 40.1
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 8.7e-11 73.2 77 44.2
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 1.1e-10 72.8 63 49.2
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 1.3e-06 59.3 66 45.5
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 1.3e-06 59.3 66 45.5


User provided reference genes

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