Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 0.0e+00 1290.0 651 100.0
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 5.5e-228 794.7 710 59.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.9e-213 745.7 671 58.1
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 4.0e-194 682.2 671 55.7
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.0e-174 615.1 708 48.9
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.0e-173 614.4 662 49.8
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 1.3e-173 614.0 643 51.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 6.6e-173 611.7 648 50.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.5e-172 610.5 705 48.9
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 4.7e-171 605.5 712 46.9
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 4.7e-171 605.5 657 50.1
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 6.2e-171 605.1 662 50.0
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.8e-170 603.6 661 49.3
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 6.8e-170 601.7 697 47.9
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.8e-160 569.3 726 43.8
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.1e-159 567.8 674 48.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.6e-158 563.9 683 47.7
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 3.5e-158 562.8 633 48.0
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.8e-155 553.1 721 44.4
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.8e-153 545.4 720 43.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 9.9e-153 544.7 669 47.1
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.3e-152 544.3 679 45.4
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 1.3e-152 544.3 680 45.4
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 2.9e-152 543.1 685 44.7
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.9e-151 540.4 646 47.2
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 4.2e-151 539.3 706 43.1
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 6.0e-150 535.4 734 43.1
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 1.8e-149 533.9 728 43.1
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.8e-149 533.9 734 42.9
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.0e-149 533.1 723 42.6
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 6.7e-149 531.9 720 43.9
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.5e-148 530.8 749 41.9
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.5e-148 530.0 717 42.8
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 8.1e-147 525.0 716 42.5
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 4.0e-146 522.7 688 44.9
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.5e-145 520.8 667 45.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 9.9e-145 518.1 689 43.3
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.7e-144 517.3 738 43.1
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 2.2e-144 516.9 667 44.8
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 1.9e-143 513.8 715 42.4
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 4.2e-143 512.7 725 41.8
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 7.1e-143 511.9 750 41.6
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.1e-142 510.4 661 44.0
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 8.7e-141 505.0 663 44.3
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 3.3e-140 503.1 731 39.9
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.6e-140 502.3 649 42.8
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 7.4e-140 501.9 715 41.1
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 2.8e-139 500.0 721 42.3
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.1e-138 498.0 646 45.0
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.4e-138 496.9 702 42.5
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 1.5e-137 494.2 705 43.4
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 1.0e-136 491.5 590 45.6
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.2e-136 490.3 753 40.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 4.9e-136 489.2 706 42.1
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.1e-135 488.0 864 36.6
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-135 486.9 733 40.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 4.2e-135 486.1 705 41.7
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 4.2e-135 486.1 705 41.3
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 9.3e-135 485.0 732 40.7
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.7e-134 483.4 733 40.1
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.0e-133 479.9 717 41.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 5.1e-133 479.2 674 43.0
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 6.7e-133 478.8 701 43.7
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 1.5e-132 477.6 694 42.5
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.5e-132 477.6 702 41.6
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 1.6e-131 474.2 658 42.9
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 3.7e-131 473.0 675 41.3
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 8.2e-131 471.9 717 40.3
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 3.1e-130 469.9 716 40.5
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.1e-130 469.9 641 43.2
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 9.0e-130 468.4 732 41.3
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.5e-129 467.6 714 39.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 4.5e-129 466.1 714 39.8
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 7.6e-129 465.3 693 41.6
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 7.6e-129 465.3 683 40.8
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.7e-128 464.2 623 42.7
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.4e-127 461.1 709 40.1
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.6e-126 457.6 709 39.9
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 6.1e-126 455.7 490 51.8
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 6.7e-125 452.2 660 41.7
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.1e-124 451.4 738 39.2
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 6.3e-123 445.7 639 41.6
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.1e-122 444.9 700 40.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.1e-122 443.4 703 40.8
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 6.9e-122 442.2 677 40.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.0e-120 438.3 690 39.1
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.3e-120 438.0 649 39.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 6.5e-120 435.6 653 41.0
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 4.2e-119 433.0 643 40.4
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 9.4e-119 431.8 665 40.3
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.1e-118 430.6 718 37.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 6.1e-118 429.1 654 40.8
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.4e-117 427.9 683 39.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 1.1e-116 424.9 654 40.7
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.1e-116 424.9 658 40.4
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.7e-115 421.0 673 40.3
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.7e-115 421.0 679 39.0
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.3e-115 419.1 427 51.3
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 6.3e-115 419.1 643 39.8
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 3.4e-113 413.3 422 51.2
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 5.0e-112 409.5 619 41.2
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 7.0e-106 389.0 526 43.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 9.1e-106 388.7 596 39.3
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 6.5e-104 382.5 523 43.6
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.5e-103 380.6 703 36.3
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.1e-102 377.5 526 42.8
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 6.1e-102 375.9 641 37.4
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.5e-100 371.3 656 37.5
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 2.0e-100 370.9 621 38.5
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.7e-100 369.4 445 47.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.4e-90 338.2 640 33.6
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.1e-90 336.7 713 34.2
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 1.2e-86 325.1 526 39.4
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 3.6e-86 323.6 291 57.4
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.8e-85 319.3 467 42.0
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.5e-84 318.2 372 47.0
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.1e-82 310.5 700 32.6
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 5.9e-81 306.2 354 46.6
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 4.0e-77 293.5 402 42.8
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.3e-69 267.7 542 34.7
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.8e-69 266.2 371 40.4
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 3.9e-64 250.4 675 28.9
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 2.3e-56 224.6 368 38.3
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 8.6e-56 222.6 164 63.4
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.6e-52 211.1 810 24.7
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.9e-51 207.6 361 36.8
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 5.4e-50 203.4 678 29.6
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.9e-45 186.4 779 22.8
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 2.3e-40 171.4 476 30.5
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.1e-40 170.2 237 41.4
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 2.8e-38 164.5 229 43.2
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 6.9e-37 159.8 141 53.2
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.8e-32 145.2 443 28.9
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 3.0e-32 144.4 198 42.4
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 3.0e-32 144.4 251 35.9
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.9e-27 127.9 736 20.7
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.9e-27 127.1 239 36.4
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 4.6e-25 120.6 279 32.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.9e-23 115.2 195 37.4
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 2.1e-22 111.7 120 50.8
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.8e-22 111.3 120 50.0
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 2.8e-22 111.3 148 39.9
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 5.5e-18 97.1 107 47.7
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 9.3e-18 96.3 162 40.7
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-15 88.6 194 29.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.8e-14 84.0 210 32.4
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 6.3e-14 83.6 322 24.8
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.9e-11 74.7 143 34.3
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.5e-11 73.6 205 28.3
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.2e-10 71.2 64 56.2
Os05g0352700 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D004985 6.1e-09 67.0 194 25.3
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 7.9e-09 66.6 101 31.7
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 2.3e-08 65.1 226 28.3
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.7e-08 63.5 71 43.7
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 1.3e-06 59.3 69 40.6


User provided reference genes

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