Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 3.2e-153 545.0 275 100.0
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.8e-104 382.5 259 81.1
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 7.8e-75 284.6 204 73.0
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 2.8e-72 276.2 207 70.0
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 2.1e-67 260.0 192 72.4
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 1.0e-66 257.7 205 65.9
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.1e-63 247.7 203 65.0
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.0e-63 245.7 207 60.4
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 1.5e-62 243.8 210 64.8
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 2.0e-62 243.4 207 63.3
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 4.4e-62 242.3 214 61.2
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 5.8e-62 241.9 208 63.0
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.8e-62 241.9 207 60.4
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 7.6e-62 241.5 205 60.5
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 7.6e-62 241.5 205 60.5
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.3e-61 240.7 203 63.1
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 1.3e-61 240.7 207 61.8
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 1.3e-61 240.7 214 60.3
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.7e-61 240.4 208 62.5
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.2e-61 240.0 206 64.1
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 3.8e-61 239.2 206 61.2
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.8e-61 239.2 238 55.9
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 3.8e-61 239.2 212 60.8
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 3.8e-61 239.2 209 60.3
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 4.9e-61 238.8 211 62.1
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 4.9e-61 238.8 199 63.3
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 4.9e-61 238.8 209 60.8
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 8.4e-61 238.0 209 59.8
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 1.4e-60 237.3 205 62.0
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.4e-60 237.3 219 60.3
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.9e-60 236.9 205 62.0
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 1.9e-60 236.9 204 62.3
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 3.2e-60 236.1 203 62.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 5.4e-60 235.3 207 58.9
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 7.1e-60 235.0 204 62.3
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 7.1e-60 235.0 197 61.4
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 7.1e-60 235.0 204 61.8
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 9.3e-60 234.6 207 61.8
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 9.3e-60 234.6 210 60.5
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 1.2e-59 234.2 199 63.3
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.6e-59 233.8 207 58.5
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.1e-59 233.4 201 61.7
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 2.7e-59 233.0 207 58.0
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 3.5e-59 232.6 207 58.5
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.6e-59 232.3 203 61.6
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.0e-58 231.1 200 60.0
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.0e-58 231.1 200 60.0
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.0e-58 231.1 204 63.2
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.7e-58 230.3 207 60.4
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 3.0e-58 229.6 237 54.4
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.9e-58 229.2 200 60.0
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 3.9e-58 229.2 199 59.8
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 5.1e-58 228.8 211 60.7
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 8.7e-58 228.0 197 60.9
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 8.7e-58 228.0 209 57.9
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 1.1e-57 227.6 198 61.1
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.1e-57 227.6 206 60.2
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.1e-57 227.6 244 53.3
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 1.5e-57 227.3 197 59.9
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.5e-57 227.3 197 58.4
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.9e-57 226.9 205 59.5
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 1.9e-57 226.9 211 58.3
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 2.5e-57 226.5 212 58.0
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 3.3e-57 226.1 199 59.8
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 4.3e-57 225.7 206 58.3
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 5.6e-57 225.3 197 59.4
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 5.6e-57 225.3 201 60.2
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 5.6e-57 225.3 210 59.5
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 5.6e-57 225.3 224 56.7
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 7.3e-57 224.9 201 60.7
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 7.3e-57 224.9 223 55.6
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.3e-56 224.2 142 72.5
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 4.8e-56 222.2 199 58.8
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 6.2e-56 221.9 211 57.3
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 6.2e-56 221.9 205 58.5
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 6.2e-56 221.9 205 57.6
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 6.2e-56 221.9 203 59.6
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.4e-55 220.7 203 59.6
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 1.4e-55 220.7 210 58.1
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 3.1e-55 219.5 198 58.6
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 3.1e-55 219.5 168 64.9
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 6.9e-55 218.4 197 56.9
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 9.0e-55 218.0 198 57.1
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.5e-54 217.2 226 54.0
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 5.8e-54 215.3 187 59.4
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 9.9e-54 214.5 197 56.9
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 2.9e-53 213.0 197 56.3
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 1.4e-52 210.7 197 55.8
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 3.3e-49 199.5 181 58.6
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 4.3e-49 199.1 204 56.4
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 9.6e-49 198.0 124 74.2
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.1e-48 196.8 189 54.5
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 2.4e-47 193.4 234 50.0
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.5e-46 190.7 184 57.6
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 4.9e-45 185.7 176 59.7
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 7.1e-44 181.8 144 60.4
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 1.2e-43 181.0 209 51.7
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 7.9e-43 178.3 131 65.6
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 1.8e-42 177.2 201 51.7
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.8e-42 177.2 207 50.2
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 5.1e-42 175.6 205 51.7
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 4.3e-41 172.6 128 64.8
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 7.4e-41 171.8 236 45.8
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 1.5e-38 164.1 241 42.3
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 2.6e-38 163.3 201 46.8
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 7.6e-38 161.8 201 46.8
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.0e-37 159.1 198 48.0
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.5e-35 152.9 222 45.5
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 7.9e-35 151.8 155 57.4
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.3e-32 144.4 155 57.4
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.6e-32 144.1 243 37.9
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 4.8e-32 142.5 199 43.7
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 9.0e-31 138.3 161 55.3
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 9.0e-31 138.3 201 41.8
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 1.2e-30 137.9 169 49.7
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 1.0e-29 134.8 146 56.2
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 9.4e-28 128.3 79 75.9
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.3e-26 123.6 142 52.8
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 5.9e-22 109.0 174 43.7
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 1.3e-21 107.8 70 72.9
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.4e-20 101.7 57 73.7
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 4.4e-17 92.8 67 55.2
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.4e-15 87.0 49 75.5
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 4.1e-15 86.3 79 58.2
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 4.1e-15 86.3 74 54.1
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 5.3e-15 85.9 50 70.0
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 9.1e-15 85.1 53 69.8
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 2.2e-13 80.5 91 51.6
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 1.1e-12 78.2 48 79.2
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.5e-12 77.0 48 79.2
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.2e-12 76.6 48 79.2
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.2e-12 75.5 48 77.1
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 7.2e-12 75.5 48 75.0
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 3.0e-10 70.1 43 79.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.7e-10 68.9 43 79.1
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 1.2e-06 58.2 42 64.3
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 2.0e-06 57.4 29 82.8


User provided reference genes

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