Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 3.3e-206 721.5 362 100.0
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 7.2e-169 597.4 358 82.7
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 1.2e-168 596.7 358 82.7
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 2.7e-168 595.5 363 81.3
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 2.4e-156 555.8 363 75.5
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 9.1e-156 553.9 365 75.3
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 9.1e-156 553.9 381 74.3
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 9.1e-156 553.9 365 75.6
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 5.9e-155 551.2 363 78.0
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 1.0e-154 550.4 363 75.2
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 1.7e-154 549.7 363 75.5
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 2.9e-154 548.9 363 75.5
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.5e-153 546.6 363 75.2
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 1.9e-153 546.2 363 74.7
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.0e-151 540.4 365 72.6
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 1.2e-150 537.0 365 74.0
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 1.5e-150 536.6 363 73.0
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 2.0e-150 536.2 367 74.1
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 3.3e-150 535.4 365 74.0
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 1.7e-149 533.1 364 72.5
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.2e-149 532.7 365 72.6
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 6.3e-149 531.2 364 72.8
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.4e-148 530.0 365 71.2
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 2.4e-148 529.3 358 72.3
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 2.4e-148 529.3 364 73.1
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 5.3e-148 528.1 364 71.2
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 9.1e-148 527.3 363 73.0
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.2e-147 526.9 368 71.5
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 4.5e-147 525.0 365 72.1
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 7.7e-147 524.2 363 73.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 7.7e-147 524.2 387 68.2
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.9e-146 522.3 365 71.5
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 5.0e-146 521.5 365 70.4
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 8.5e-146 520.8 363 72.2
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.9e-145 519.6 365 71.5
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 9.4e-145 517.3 365 70.7
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.6e-144 516.5 365 71.0
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 2.1e-144 516.2 365 71.8
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.7e-144 515.0 366 69.9
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 4.7e-144 515.0 365 71.5
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 4.7e-144 515.0 363 69.4
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 2.3e-143 512.7 365 70.7
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 8.8e-143 510.8 374 70.3
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.2e-142 510.4 365 70.4
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-142 509.6 365 70.7
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.0e-142 509.6 365 70.7
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 2.0e-142 509.6 365 69.6
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 2.6e-142 509.2 369 70.2
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 3.4e-142 508.8 365 69.9
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 3.4e-142 508.8 364 69.8
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 5.7e-142 508.1 366 68.9
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.8e-141 505.8 338 73.4
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 4.8e-141 505.0 365 68.8
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 1.1e-140 503.8 365 68.5
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 1.1e-140 503.8 364 71.2
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 5.4e-140 501.5 365 68.2
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 7.0e-140 501.1 376 67.6
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 1.2e-139 500.4 365 69.6
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 1.2e-139 500.4 366 68.9
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 4.5e-139 498.4 365 68.2
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 7.7e-139 497.7 365 68.2
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.7e-138 496.5 363 69.4
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 8.5e-138 494.2 363 68.6
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.1e-137 493.8 367 68.1
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.2e-136 490.3 364 68.4
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 2.8e-136 489.2 365 70.1
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 8.8e-135 484.2 366 68.3
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 2.6e-134 482.6 370 65.7
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 5.7e-134 481.5 363 67.2
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 9.8e-134 480.7 364 67.0
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 1.7e-133 479.9 363 67.2
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 4.9e-133 478.4 363 66.7
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 8.3e-133 477.6 372 66.9
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 1.4e-132 476.9 364 66.8
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 1.4e-132 476.9 364 67.0
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 5.4e-132 474.9 365 65.5
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.2e-131 473.8 391 63.9
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.0e-131 473.0 360 67.2
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.5e-131 471.9 364 65.9
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 1.7e-130 469.9 363 65.8
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 2.3e-130 469.5 363 65.3
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 3.8e-130 468.8 356 67.7
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 5.0e-130 468.4 307 73.9
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 6.6e-130 468.0 364 66.5
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 8.6e-130 467.6 389 62.7
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.3e-129 465.7 363 65.8
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.8e-127 459.9 364 67.0
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 3.0e-127 459.1 371 65.5
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.0e-127 458.8 364 64.8
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 5.2e-127 458.4 364 66.8
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 1.9e-121 439.9 318 69.2
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.2e-120 434.9 367 61.6
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 4.1e-116 422.2 368 59.2
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 4.6e-115 418.7 333 64.9
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.5e-113 413.7 303 68.0
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 5.6e-113 411.8 278 72.7
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 3.6e-112 409.1 357 59.9
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 2.3e-111 406.4 363 57.3
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 6.8e-111 404.8 361 60.1
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.9e-109 399.4 364 59.9
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 5.4e-108 395.2 365 57.5
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 1.6e-107 393.7 368 57.1
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.5e-107 392.5 340 58.8
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.4e-100 370.5 385 55.1
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.1e-99 366.7 385 50.6
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.2e-93 346.7 243 71.6
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.1e-92 344.4 310 57.1
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 5.6e-81 305.4 382 43.5
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.2e-78 297.7 371 44.2
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 9.3e-76 288.1 215 67.0
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 3.0e-74 283.1 278 55.0
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 6.2e-72 275.4 421 40.6
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 1.8e-71 273.9 364 47.0
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.1e-68 264.6 306 49.3
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 1.9e-68 263.8 199 66.8
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.1e-65 254.6 195 63.1
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 9.7e-65 251.5 173 72.8
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 3.7e-64 249.6 172 71.5
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 2.5e-60 236.9 192 67.7
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 4.6e-59 232.6 213 57.3
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.2e-54 218.0 161 67.7
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.8e-48 196.1 122 80.3
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.2e-46 191.4 122 78.7
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.2e-46 191.4 139 70.5
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.4e-44 184.5 198 50.0
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.1e-41 174.9 307 38.4
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 2.2e-40 170.6 252 40.9
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 3.1e-39 166.8 143 60.8
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 1.1e-36 158.3 164 52.4
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 4.2e-36 156.4 122 68.0
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 9.4e-36 155.2 198 41.9
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 1.0e-34 151.8 141 59.6
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 2.7e-30 137.1 143 53.1
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.5e-28 130.6 114 57.9
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 1.4e-23 114.8 72 77.8
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.1e-23 113.6 82 68.3
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 2.3e-21 107.5 72 76.4
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 9.5e-20 102.1 386 24.4
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 3.0e-18 97.1 77 62.3
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-14 83.6 133 36.8


User provided reference genes

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