Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 7.9e-123 443.7 217 100.0
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 4.9e-96 354.8 204 86.3
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 3.6e-67 258.8 197 65.5
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 4.7e-67 258.5 201 64.2
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 2.0e-65 253.1 196 65.8
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 3.2e-63 245.7 195 63.1
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 3.0e-61 239.2 202 59.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 3.9e-61 238.8 202 58.4
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 5.1e-61 238.4 201 60.2
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.1e-60 237.3 196 57.7
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 3.3e-60 235.7 201 59.7
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 9.6e-60 234.2 205 58.0
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 9.6e-60 234.2 200 59.5
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 9.6e-60 234.2 201 59.7
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.2e-59 233.8 199 58.3
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.2e-59 233.8 202 57.9
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 6.2e-59 231.5 196 57.7
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 8.1e-59 231.1 198 59.6
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.4e-58 230.3 201 57.2
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 2.4e-58 229.6 196 56.1
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.4e-58 229.6 193 59.1
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 6.9e-58 228.0 198 57.6
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 6.9e-58 228.0 200 56.5
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.9e-58 227.6 201 56.2
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 8.9e-58 227.6 208 53.8
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 2.6e-57 226.1 196 56.6
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 3.4e-57 225.7 194 57.2
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 7.6e-57 224.6 201 55.2
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.3e-56 223.8 207 55.1
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 3.8e-56 222.2 194 57.7
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 4.9e-56 221.9 201 55.2
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 8.4e-56 221.1 210 55.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.4e-55 220.3 198 54.5
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 2.4e-55 219.5 201 51.7
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.4e-55 219.5 196 55.6
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 2.4e-55 219.5 194 56.2
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 3.2e-55 219.2 196 54.6
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 4.2e-55 218.8 196 54.1
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 4.2e-55 218.8 208 53.4
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 4.2e-55 218.8 195 53.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 4.2e-55 218.8 199 53.3
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 5.4e-55 218.4 196 55.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 9.3e-55 217.6 192 53.1
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 1.2e-54 217.2 198 54.0
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 2.7e-54 216.1 196 52.6
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 3.5e-54 215.7 201 53.7
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 4.6e-54 215.3 219 52.1
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 7.8e-54 214.5 200 53.5
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 7.8e-54 214.5 179 58.1
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 7.8e-54 214.5 195 59.0
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 3.9e-53 212.2 196 56.6
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 5.1e-53 211.8 202 52.0
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.5e-52 210.3 179 57.0
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 3.3e-52 209.1 181 55.2
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 4.3e-52 208.8 177 61.6
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 5.6e-52 208.4 196 54.1
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 7.3e-52 208.0 190 54.7
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 9.6e-52 207.6 203 54.7
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 2.1e-51 206.5 190 54.7
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 2.8e-51 206.1 203 51.7
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.1e-50 204.1 201 49.3
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.4e-50 203.8 197 51.8
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 2.4e-50 203.0 202 52.0
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 4.0e-50 202.2 189 56.1
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 4.0e-50 202.2 197 51.8
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 5.3e-50 201.8 200 51.0
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 6.9e-50 201.4 199 51.3
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 6.9e-50 201.4 189 56.1
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.2e-49 200.7 189 55.0
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.0e-49 199.9 207 50.2
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 5.8e-49 198.4 198 50.5
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 9.9e-49 197.6 177 59.3
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 4.9e-48 195.3 195 53.8
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 7.1e-47 191.4 196 50.0
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.2e-46 190.7 223 46.2
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 2.7e-46 189.5 196 48.0
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 4.6e-46 188.7 214 46.7
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 6.0e-46 188.3 198 48.0
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 7.9e-46 188.0 182 54.4
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 3.9e-45 185.7 181 51.4
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 5.1e-45 185.3 193 49.7
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 5.1e-45 185.3 216 46.8
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 8.7e-45 184.5 217 45.6
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.1e-44 184.1 196 50.5
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 2.5e-44 183.0 207 47.3
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 3.3e-44 182.6 192 49.0
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 5.6e-44 181.8 202 47.0
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 7.4e-44 181.4 181 50.3
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 2.8e-43 179.5 219 45.7
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 4.8e-43 178.7 200 47.0
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 6.2e-43 178.3 174 52.9
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 6.2e-43 178.3 203 46.3
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 8.1e-43 177.9 218 44.0
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 3.1e-42 176.0 203 46.3
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.1e-42 176.0 196 49.5
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.1e-42 176.0 196 49.5
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 5.3e-42 175.3 210 45.7
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 7.6e-41 171.4 213 45.5
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.3e-40 170.6 181 51.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 6.4e-40 168.3 180 50.6
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 7.9e-38 161.4 200 44.0
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 5.1e-37 158.7 203 44.3
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 2.1e-35 153.3 127 62.2
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.2e-33 147.5 191 43.5
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 2.0e-33 146.7 207 40.1
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.3e-32 144.1 198 42.4
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 4.2e-31 139.0 179 40.8
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 3.0e-29 132.9 180 41.7
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.5e-28 130.6 209 34.9
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 8.2e-27 124.8 130 54.6
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.4e-26 124.0 134 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 3.2e-23 112.8 210 34.8
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 6.1e-22 108.6 103 50.5
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 5.1e-21 105.5 176 34.7
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 1.6e-19 100.5 112 44.6
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.7e-19 99.4 100 51.0
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 8.2e-19 98.2 105 50.5
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 1.5e-17 94.0 100 46.0
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 8.5e-16 88.2 80 50.0
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.7e-14 83.2 202 30.7
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 6.1e-14 82.0 80 47.5
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 6.1e-14 82.0 80 47.5


User provided reference genes

Program Settings