Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14789 Striga asiatica HOM05D005526 ORTHO05D006802 2.1e-189 665.6 355 100.0
SalBow2G2365 Salvia bowleyana HOM05D005526 ORTHO05D006802 1.2e-115 420.6 390 62.3
MSTRG.9436 Avicennia marina HOM05D005526 ORTHO05D006802 5.1e-111 405.2 390 61.0
Migut.D01055 Erythranthe guttata HOM05D005526 ORTHO05D006802 3.3e-110 402.5 391 61.4
Oeu052283.1 Olea europaea HOM05D005526 ORTHO05D006802 2.5e-105 386.3 401 58.4
Solyc06g067990.3 Solanum lycopersicum HOM05D005526 ORTHO05D006802 1.5e-102 377.1 388 57.7
Dinv38097 Davidia involucrata HOM05D005526 ORTHO05D006802 5.7e-102 375.2 397 57.2
Thecc.06G073100 Theobroma cacao HOM05D005526 ORTHO05D006802 3.4e-99 365.9 405 55.1
SGA_v2.0_scaffold16G07615 Striga asiatica HOM05D005526 ORTHO05D006802 7.7e-99 364.8 399 55.9
Actinidia08810 Actinidia chinensis HOM05D005526 ORTHO05D006802 1.3e-98 364.0 390 56.2
Duzib235G1092 Durio zibethinus HOM05D005526 ORTHO05D006802 1.7e-98 363.6 405 55.3
Ciclev10025661m.g Citrus clementina HOM05D005526 ORTHO05D006802 3.8e-98 362.5 401 55.4
ECA234G2940 Erigeron canadensis HOM05D005526 ORTHO05D006802 2.5e-97 359.8 395 55.4
Manes.04G116500 Manihot esculenta HOM05D005526 ORTHO05D006802 2.5e-97 359.8 401 55.1
TWI75G1755 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 4.2e-97 359.0 401 53.6
Glyma.13G363400 Glycine max HOM05D005526 ORTHO05D006802 1.2e-96 357.5 401 53.4
CSS0037293 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 6.1e-96 355.1 394 55.1
Glyma.15G010400 Glycine max HOM05D005526 ORTHO05D006802 1.0e-95 354.4 402 54.0
TWI18G0833 Tripterygium wilfordii HOM05D005526 ORTHO05D006802 1.4e-95 354.0 401 53.6
Gohir.D06G117200 Gossypium hirsutum HOM05D005526 ORTHO05D006802 3.9e-95 352.4 396 54.3
Gohir.A06G112600 Gossypium hirsutum HOM05D005526 ORTHO05D006802 5.1e-95 352.1 396 54.8
ClCG07G012810 Citrullus lanatus HOM05D005526 ORTHO05D006802 6.7e-95 351.7 399 53.4
Ca_01085_v3 Cicer arietinum L. HOM05D005526 ORTHO05D006802 8.8e-95 351.3 404 54.7
Gorai.010G134800 Gossypium raimondii HOM05D005526 ORTHO05D006802 1.1e-94 350.9 396 54.0
Lj3g0017842 Lotus japonicus HOM05D005526 ORTHO05D006802 1.5e-94 350.5 401 53.4
Prupe.3G079900 Prunus persica HOM05D005526 ORTHO05D006802 1.5e-94 350.5 397 55.2
Atru.chr1.3093 Acer truncatum HOM05D005526 ORTHO05D006802 2.0e-94 350.1 400 53.5
TAR383G0281 Trochodendron aralioides HOM05D005526 ORTHO05D006802 3.3e-94 349.4 397 53.9
Medtr2g103110 Medicago truncatula HOM05D005526 ORTHO05D006802 7.4e-94 348.2 392 54.8
Cfa002011 Carpinus fangiana HOM05D005526 ORTHO05D006802 1.7e-93 347.1 399 53.6
Phvul.005G174900 Phaseolus vulgaris HOM05D005526 ORTHO05D006802 1.7e-93 347.1 397 54.2
Lsat_1_v5_gn_5_132520 Lactuca sativa HOM05D005526 ORTHO05D006802 2.2e-93 346.7 376 56.4
MD09G1221000 Malus domestica HOM05D005526 ORTHO05D006802 1.4e-92 344.0 402 53.2
Hund06580 Selenicereus undatus HOM05D005526 ORTHO05D006802 1.4e-92 344.0 393 53.7
Cpa.g.sc336.8 Carica papaya HOM05D005526 ORTHO05D006802 3.1e-92 342.8 407 52.8
Eucgr.J03045 Eucalyptus grandis HOM05D005526 ORTHO05D006802 1.5e-91 340.5 422 50.9
Nn2g11952 Nelumbo nucifera HOM05D005526 ORTHO05D006802 1.5e-91 340.5 392 53.3
CsaV3_4G001390 Cucumis sativus L. HOM05D005526 ORTHO05D006802 2.0e-91 340.1 401 52.4
AUR62011560 Chenopodium quinoa HOM05D005526 ORTHO05D006802 2.6e-91 339.7 376 55.6
AUR62016379 Chenopodium quinoa HOM05D005526 ORTHO05D006802 1.3e-90 337.4 391 53.2
FvH4_6g30340 Fragaria vesca HOM05D005526 ORTHO05D006802 1.3e-90 337.4 394 53.6
MBI01_g11875_MAGBIO Magnolia biondii HOM05D005526 ORTHO05D006802 1.3e-90 337.4 398 52.8
Dinv30571 Davidia involucrata HOM05D005526 ORTHO05D006802 1.7e-90 337.0 324 60.2
EL10Ac9g21940 Beta vulgaris HOM05D005526 ORTHO05D006802 1.1e-89 334.3 381 52.8
FAN02G2127 Fragaria x ananassa HOM05D005526 ORTHO05D006802 3.2e-89 332.8 394 53.3
Nitab4.5_0013710g0010 Nicotiana tabacum HOM05D005526 ORTHO05D006802 5.5e-89 332.0 396 52.5
PGR031G1627 Punica granatum HOM05D005526 ORTHO05D006802 5.5e-89 332.0 396 54.0
arahy.Tifrunner.gnm1.ann1.IMA97E Arachis hypogaea HOM05D005526 ORTHO05D006802 9.4e-89 331.3 394 53.3
Nitab4.5_0000620g0060 Nicotiana tabacum HOM05D005526 ORTHO05D006802 1.6e-88 330.5 385 53.2
Potri.001G172800 Populus trichocarpa HOM05D005526 ORTHO05D006802 2.1e-88 330.1 405 51.9
Sed0002477 Sechium edule HOM05D005526 ORTHO05D006802 3.6e-88 329.3 397 51.4
THA.LOC104812497 Tarenaya hassleriana HOM05D005526 ORTHO05D006802 3.6e-88 329.3 396 52.0
VMungo1080G0636 Vigna mungo HOM05D005526 ORTHO05D006802 4.7e-88 328.9 400 51.2
arahy.Tifrunner.gnm1.ann1.FYL3MV Arachis hypogaea HOM05D005526 ORTHO05D006802 6.1e-88 328.6 400 52.5
PSO170G3249 Papaver somniferum HOM05D005526 ORTHO05D006802 2.3e-87 326.6 397 52.4
Aqoxy7G02084 Aquilegia oxysepala HOM05D005526 ORTHO05D006802 8.8e-87 324.7 397 52.6
CiPaw.01G244400 Carya illinoinensis HOM05D005526 ORTHO05D006802 1.1e-86 324.3 399 52.1
DCAR_025483 Daucus carota HOM05D005526 ORTHO05D006802 4.4e-86 322.4 398 50.3
Rhsim12G0193000 Rhododendron simsii HOM05D005526 ORTHO05D006802 9.7e-86 321.2 499 44.1
Sc10g0005720 Simmondsia chinensis HOM05D005526 ORTHO05D006802 1.7e-85 320.5 390 51.3
CANSAT56G0953 Cannabis sativa HOM05D005526 ORTHO05D006802 6.3e-85 318.5 397 53.7
FAN09G0405 Fragaria x ananassa HOM05D005526 ORTHO05D006802 9.1e-84 314.7 381 52.8
vmacro16915 Vaccinium macrocarpon HOM05D005526 ORTHO05D006802 1.2e-83 314.3 519 42.6
Aa31LG4G500 Aethionema arabicum HOM05D005526 ORTHO05D006802 2.9e-82 309.7 389 50.9
CiPaw.02G154800 Carya illinoinensis HOM05D005526 ORTHO05D006802 8.5e-82 308.1 326 57.4
CARHR074270 Cardamine hirsuta HOM05D005526 ORTHO05D006802 7.2e-81 305.1 396 50.3
Thhalv10018648m.g Eutrema salsugineum HOM05D005526 ORTHO05D006802 7.2e-81 305.1 394 50.5
Sp5g35600 Schrenkiella parvula HOM05D005526 ORTHO05D006802 2.7e-80 303.1 400 50.0
QL05p027824 Quercus lobata HOM05D005526 ORTHO05D006802 8.0e-80 301.6 486 43.8
A07p26570 Brassica napus HOM05D005526 ORTHO05D006802 2.3e-79 300.1 398 49.7
AT3G06820 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 4.0e-79 299.3 392 48.7
MD17G1204400 Malus domestica HOM05D005526 ORTHO05D006802 2.6e-78 296.6 483 44.1
BcaB02g07290 Brassica carinata HOM05D005526 ORTHO05D006802 3.4e-78 296.2 407 48.4
unitig_899.g14780 Utricularia gibba HOM05D005526 ORTHO05D006802 3.4e-78 296.2 374 53.2
BcaC08g45297 Brassica carinata HOM05D005526 ORTHO05D006802 7.5e-78 295.0 402 49.0
Ah.01g020810 Amaranthus hybridus HOM05D005526 ORTHO05D006802 9.7e-78 294.7 399 48.9
C06p28990 Brassica napus HOM05D005526 ORTHO05D006802 1.3e-77 294.3 403 49.1
BolC6t38065H Brassica oleracea HOM05D005526 ORTHO05D006802 3.7e-77 292.7 405 48.6
AT1G80210 Arabidopsis thaliana HOM05D005526 ORTHO05D006802 1.8e-76 290.4 369 51.2
CDE02G1452 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 3.5e-75 286.2 377 47.5
Peaxi162Scf00207g00731 Petunia axillaris HOM05D005526 ORTHO05D006802 5.0e-74 282.3 399 45.4
Os05g0542600 Oryza sativa ssp. japonica HOM05D005526 ORTHO05D006802 1.6e-72 277.3 389 46.5
SEGI_35764 Sequoiadendron giganteum HOM05D005526 ORTHO05D006802 1.8e-71 273.9 410 43.2
Cc04_g04020 Coffea canephora HOM05D005526 ORTHO05D006802 3.4e-70 269.6 283 56.9
Zm00001eb294490 Zea mays HOM05D005526 ORTHO05D006802 9.8e-70 268.1 388 45.4
BraA07t30300Z Brassica rapa HOM05D005526 ORTHO05D006802 6.3e-69 265.4 363 48.8
CAN.G395.46 Capsicum annuum HOM05D005526 ORTHO05D006802 2.4e-68 263.5 288 55.2
Oeu063802.2 Olea europaea HOM05D005526 ORTHO05D006802 3.5e-67 259.6 289 55.4
Sopen06g025270 Solanum pennellii HOM05D005526 ORTHO05D006802 7.7e-67 258.5 289 53.6
GSVIVG01017251001 Vitis vinifera HOM05D005526 ORTHO05D006802 3.6e-64 249.6 297 50.8
Lj5C68G25 Lonicera japonica HOM05D005526 ORTHO05D006802 2.0e-62 243.8 310 49.7
Lalb_Chr14g0373681 Lupinus albus HOM05D005526 ORTHO05D006802 4.9e-61 239.2 303 50.2
CSS0003126 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 2.4e-60 236.9 292 51.4
HanXRQChr10g0303071 Helianthus annuus HOM05D005526 ORTHO05D006802 7.8e-59 231.9 298 50.3
CDE01G0292 Ceratophyllum demersum HOM05D005526 ORTHO05D006802 1.7e-58 230.7 356 44.4
MELO3C017901.2 Cucumis melo HOM05D005526 ORTHO05D006802 6.6e-58 228.8 301 48.2
Psat5g300440 Pisum sativum HOM05D005526 ORTHO05D006802 7.3e-57 225.3 304 49.0
Pp3c27_4740 Physcomitrium patens HOM05D005526 ORTHO05D006802 9.5e-57 224.9 387 40.8
RcHm_v2.0_Chr2g0136621 Rosa chinensis HOM05D005526 ORTHO05D006802 2.8e-56 223.4 299 48.2
COL.COLO4_12896 Corchorus olitorius HOM05D005526 ORTHO05D006802 3.6e-56 223.0 300 48.3
TPR.G37284 Trifolium pratense HOM05D005526 ORTHO05D006802 4.0e-55 219.5 292 48.6
Oeu014842.2 Olea europaea HOM05D005526 ORTHO05D006802 2.0e-54 217.2 320 46.2
Haze_16512 Corylus avellana HOM05D005526 ORTHO05D006802 1.4e-52 211.1 210 59.0
Mapoly0053s0043 Marchantia polymorpha HOM05D005526 ORTHO05D006802 2.0e-51 207.2 387 39.0
AL2G41300 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 2.3e-50 203.8 291 47.1
AL3G17940 Arabidopsis lyrata HOM05D005526 ORTHO05D006802 3.3e-49 199.9 297 46.5
CBR_g46861 Chara braunii HOM05D005526 ORTHO05D006802 2.3e-47 193.7 435 35.6
Carub.0002s2731 Capsella rubella HOM05D005526 ORTHO05D006802 1.2e-46 191.4 302 45.7
FAN14G4362 Fragaria x ananassa HOM05D005526 ORTHO05D006802 2.6e-46 190.3 231 51.5
Zm00001eb342510 Zea mays HOM05D005526 ORTHO05D006802 3.2e-44 183.3 217 54.4
ATR1156G007 Amborella trichopoda HOM05D005526 ORTHO05D006802 5.4e-44 182.6 301 42.5
HPP92_009843 Vanilla planifolia HOM05D005526 ORTHO05D006802 2.0e-38 164.1 291 39.9
Lj5A68T70 Lonicera japonica HOM05D005526 ORTHO05D006802 6.6e-34 149.1 83 91.6
CSS0009710 Camellia sinensis var. sinensis HOM05D005526 ORTHO05D006802 1.6e-32 144.4 83 88.0
Sopen06g025280 Solanum pennellii HOM05D005526 ORTHO05D006802 6.2e-32 142.5 83 86.7
PGSC0003DMG401028513 Solanum tuberosum HOM05D005526 ORTHO05D006802 6.2e-32 142.5 83 86.7
Cc04_g04010 Coffea canephora HOM05D005526 ORTHO05D006802 8.1e-32 142.1 82 89.0
HanXRQChr10g0303081 Helianthus annuus HOM05D005526 ORTHO05D006802 4.0e-31 139.8 83 86.7
TPR.G37278 Trifolium pratense HOM05D005526 ORTHO05D006802 1.2e-30 138.3 82 85.4
Lalb_Chr14g0373671 Lupinus albus HOM05D005526 ORTHO05D006802 1.5e-30 137.9 83 81.9
FAN05G1558 Fragaria x ananassa HOM05D005526 ORTHO05D006802 7.6e-30 135.6 81 85.2
RcHm_v2.0_Chr2g0136631 Rosa chinensis HOM05D005526 ORTHO05D006802 2.9e-29 133.7 83 81.9
Sabra01G0138900 Salix brachista HOM05D005526 ORTHO05D006802 2.9e-29 133.7 82 82.9
Haze_16513 Corylus avellana HOM05D005526 ORTHO05D006802 6.4e-29 132.5 181 46.4
GSVIVG01017250001 Vitis vinifera HOM05D005526 ORTHO05D006802 9.3e-28 128.6 81 80.2
ATR1156G076 Amborella trichopoda HOM05D005526 ORTHO05D006802 3.5e-27 126.7 82 80.5
AagrBONN_evm.TU.Sc2ySwM_368.2432 Anthoceros agrestis HOM05D005526 ORTHO05D006802 1.6e-24 117.9 81 71.6
Cre11.g475400 Chlamydomonas reinhardtii HOM05D005526 ORTHO05D006802 2.9e-21 107.1 141 47.5
SMO196G0028 Selaginella moellendorffii HOM05D005526 ORTHO05D006802 6.4e-21 105.9 313 29.7
AagrBONN_evm.TU.Sc2ySwM_368.2431 Anthoceros agrestis HOM05D005526 ORTHO05D006802 9.3e-20 102.1 282 31.9
SalBow8G0881 Salvia bowleyana HOM05D005526 ORTHO05D006802 2.5e-17 94.0 97 56.7
Sed0012845 Sechium edule HOM05D005526 ORTHO05D006802 4.3e-17 93.2 308 32.1
CAN.G395.47 Capsicum annuum HOM05D005526 ORTHO05D006802 3.8e-13 80.1 48 81.2
Gohir.A10G140700 Gossypium hirsutum HOM05D000009 ORTHO05D000008 9.6e-09 65.5 57 59.6
COL.COLO4_12895 Corchorus olitorius HOM05D005526 ORTHO05D006802 4.0e-07 60.1 30 93.3


User provided reference genes

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