Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.7e-249 865.5 448 100.0
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 3.0e-209 731.9 450 84.4
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 8.8e-209 730.3 451 84.3
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 9.1e-190 667.2 450 76.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 5.0e-188 661.4 450 75.6
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 5.5e-187 657.9 449 75.7
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.8e-185 652.9 454 76.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 3.0e-185 652.1 453 75.5
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 4.0e-185 651.7 452 75.7
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 5.2e-185 651.4 457 75.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 1.5e-184 649.8 457 75.5
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 2.6e-184 649.0 453 74.6
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 9.8e-184 647.1 452 75.2
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 2.8e-183 645.6 452 73.9
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 3.7e-183 645.2 453 74.8
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.1e-182 643.7 461 73.1
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 5.4e-182 641.3 447 74.7
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 5.9e-181 637.9 450 74.2
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 7.7e-181 637.5 453 74.6
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 2.3e-180 636.0 453 74.0
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 6.6e-180 634.4 453 72.8
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 6.6e-180 634.4 453 74.4
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.5e-179 631.3 453 72.6
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 9.5e-179 630.6 453 75.1
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 9.5e-179 630.6 442 73.5
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.3e-177 625.9 453 73.3
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.3e-177 625.9 453 73.3
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 8.9e-177 624.0 459 72.3
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.2e-176 623.6 461 72.5
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.6e-176 622.5 453 72.4
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 5.7e-176 621.3 424 75.9
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.8e-175 619.0 453 71.3
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 8.3e-175 617.5 452 71.9
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 5.9e-173 611.3 453 71.7
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 1.3e-172 610.1 450 72.0
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 2.3e-172 609.4 446 72.4
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 2.9e-172 609.0 490 67.6
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 6.6e-172 607.8 450 71.8
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 8.6e-172 607.4 418 74.9
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 1.5e-171 606.7 455 70.1
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 2.5e-171 605.9 459 71.9
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 2.1e-170 602.8 414 75.1
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 6.1e-170 601.3 448 69.2
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.0e-169 600.5 452 69.0
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.4e-169 600.1 447 71.8
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 2.3e-169 599.4 452 70.8
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 3.1e-169 599.0 449 71.9
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 4.0e-169 598.6 452 70.4
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 4.0e-169 598.6 452 70.6
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 2.6e-168 595.9 452 71.0
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 2.6e-168 595.9 449 71.5
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 5.8e-168 594.7 452 69.7
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 4.9e-167 591.7 450 70.2
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 6.4e-167 591.3 451 70.5
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 8.3e-167 590.9 450 70.0
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 4.6e-165 585.1 453 68.2
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 6.0e-165 584.7 447 70.9
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.3e-164 582.8 456 69.1
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 6.6e-164 581.3 447 70.5
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.5e-163 580.1 455 69.7
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.9e-163 579.7 453 68.7
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.3e-163 578.9 463 68.0
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.2e-162 577.0 460 67.8
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 1.2e-162 577.0 454 69.2
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 2.1e-162 576.2 453 68.4
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 2.3e-161 572.8 466 67.4
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 4.0e-161 572.0 425 71.1
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 5.2e-161 571.6 451 69.2
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 9.8e-160 567.4 450 69.1
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 1.3e-159 567.0 450 69.1
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 2.9e-159 565.8 453 67.3
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 3.7e-159 565.5 452 67.9
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 3.7e-159 565.5 447 67.1
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 6.4e-159 564.7 457 66.3
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 8.3e-159 564.3 452 67.3
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.1e-158 563.9 450 66.4
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 1.4e-158 563.5 449 68.2
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 1.4e-158 563.5 429 69.7
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 1.9e-158 563.1 469 67.0
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.9e-158 563.1 452 67.7
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 1.2e-157 560.5 447 67.3
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 2.1e-157 559.7 452 67.3
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 1.7e-156 556.6 452 66.8
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.7e-156 556.6 504 62.3
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 2.3e-156 556.2 452 66.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 6.6e-156 554.7 453 67.3
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 8.6e-156 554.3 452 66.2
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.1e-155 553.9 452 66.2
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 1.9e-155 553.1 449 67.3
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.9e-155 553.1 393 72.3
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 4.3e-155 552.0 452 65.9
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 5.6e-155 551.6 455 66.8
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 9.5e-155 550.8 452 65.5
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 9.5e-155 550.8 457 66.3
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 2.8e-154 549.3 457 65.4
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.6e-154 548.9 458 67.2
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 6.2e-154 548.1 456 65.6
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.1e-153 547.4 452 65.7
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 2.3e-153 546.2 454 65.2
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 4.4e-152 542.0 455 64.8
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 4.4e-152 542.0 452 65.3
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 3.7e-151 538.9 482 62.0
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 1.1e-150 537.3 454 65.4
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 3.5e-149 532.3 457 64.6
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 4.6e-149 531.9 452 63.9
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 1.0e-148 530.8 457 64.3
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 8.6e-148 527.7 481 61.3
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 7.3e-147 524.6 446 65.5
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 4.7e-146 521.9 371 73.0
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 4.7e-146 521.9 451 62.3
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 4.4e-144 515.4 450 64.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 6.4e-143 511.5 426 66.0
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 3.2e-142 509.2 455 63.1
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 5.8e-136 488.4 395 65.8
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 7.6e-136 488.0 388 66.8
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 4.9e-135 485.3 437 62.7
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 7.1e-134 481.5 412 63.3
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.0e-132 477.6 426 63.6
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.9e-127 459.5 507 54.2
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 1.9e-123 446.8 469 52.9
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 7.4e-123 444.9 479 54.1
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 7.4e-123 444.9 425 59.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 7.6e-120 434.9 453 56.3
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 3.0e-116 422.9 340 66.5
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.3e-114 417.5 499 48.1
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.1e-114 416.8 338 65.4
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 4.8e-114 415.6 480 51.0
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 1.1e-105 387.9 450 50.2
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.5e-104 382.5 491 46.6
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 1.8e-100 370.5 458 50.2
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.8e-92 344.0 373 53.9
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 5.3e-89 332.4 238 71.4
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.9e-86 323.9 345 53.6
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 9.1e-81 305.1 486 41.4
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 1.2e-77 294.7 555 36.8
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 4.4e-75 286.2 364 50.5
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 5.9e-72 275.8 523 38.4
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.0e-71 275.0 377 45.6
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 6.1e-61 239.2 127 89.8
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 4.9e-58 229.6 254 56.3
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 4.1e-57 226.5 174 67.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 2.7e-56 223.8 401 38.4
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-54 216.5 178 62.4
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.2e-53 214.9 257 49.8
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 1.4e-52 211.5 179 62.0
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 4.9e-50 203.0 172 61.6
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 3.3e-46 190.3 385 37.7
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.9e-42 177.2 233 48.5
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 1.4e-41 174.9 263 41.4
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 3.7e-34 150.2 141 55.3
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 1.9e-33 147.9 108 64.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 2.3e-31 141.0 358 33.2
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 1.1e-30 138.7 132 62.9
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 6.8e-28 129.4 90 65.6
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.6e-27 127.5 145 53.8
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 7.6e-27 125.9 138 55.1
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 1.3e-26 125.2 133 57.9
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 5.1e-23 113.2 63 77.8
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 9.6e-22 109.0 84 72.6
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 2.4e-20 104.4 300 28.3
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 4.4e-19 100.1 167 42.5
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 3.8e-18 97.1 99 52.5
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 3.2e-17 94.0 56 73.2
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 7.3e-14 82.8 53 73.6
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 9.0e-12 75.9 121 43.8
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 3.4e-11 73.9 199 32.7
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 4.9e-10 70.1 109 39.4
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 4.2e-09 67.0 43 79.1
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 7.1e-09 66.2 42 83.3
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.3e-07 61.2 32 93.8
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 2.3e-07 61.2 40 77.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 3.0e-07 60.8 42 69.0


User provided reference genes

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