Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 0.0e+00 1239.6 681 100.0
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 3.9e-216 755.4 699 60.7
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 1.2e-204 717.2 699 56.9
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 3.1e-197 692.6 685 56.6
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 7.6e-196 688.0 741 54.3
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 2.5e-191 672.9 701 55.3
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 2.6e-180 636.3 679 53.0
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 8.4e-179 631.3 689 50.8
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.5e-175 620.5 704 51.8
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.8e-174 616.3 704 51.8
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 1.8e-173 613.6 696 51.0
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.5e-172 610.5 700 52.3
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 5.9e-172 608.6 761 47.2
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 2.5e-170 603.2 707 50.2
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 5.5e-170 602.1 706 51.3
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 1.6e-169 600.5 704 50.4
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.3e-168 597.4 703 49.4
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.8e-168 597.0 720 48.5
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 5.1e-168 595.5 714 47.5
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.1e-167 594.3 720 46.9
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 7.4e-167 591.7 697 49.9
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 1.1e-165 587.8 713 48.1
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 2.4e-165 586.6 713 48.5
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 1.5e-164 583.9 714 48.3
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 2.2e-163 580.1 705 49.1
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.9e-163 579.7 694 49.1
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 2.9e-163 579.7 715 47.1
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 5.0e-163 578.9 734 46.7
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 5.5e-162 575.5 676 50.3
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 7.9e-161 571.6 700 48.1
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 3.0e-160 569.7 707 47.2
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 4.3e-159 565.8 709 46.8
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 5.7e-159 565.5 728 47.0
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 7.4e-159 565.1 712 45.9
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 3.7e-158 562.8 688 48.1
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 6.3e-158 562.0 696 47.1
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 1.4e-157 560.8 708 48.2
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 5.3e-157 558.9 714 46.5
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.0e-155 554.7 738 45.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 6.5e-155 552.0 705 45.5
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 1.2e-153 547.7 692 47.8
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.4e-152 544.3 715 47.1
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 3.0e-152 543.1 699 46.2
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 5.1e-152 542.3 715 47.1
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 1.1e-151 541.2 730 45.9
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 2.6e-151 540.0 709 45.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 2.6e-151 540.0 675 48.4
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.7e-150 537.3 763 44.4
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 1.1e-149 534.6 695 46.0
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.8e-149 533.9 697 46.6
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 4.1e-149 532.7 695 46.6
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 5.3e-149 532.3 739 43.0
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 1.0e-147 528.1 701 44.8
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.3e-147 527.7 752 44.7
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 5.0e-147 525.8 727 44.6
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 1.9e-146 523.9 802 42.9
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 3.2e-146 523.1 698 46.3
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 5.5e-146 522.3 736 43.9
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.0e-144 518.1 748 42.9
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.0e-144 518.1 702 45.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 1.0e-144 518.1 703 45.5
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 4.0e-144 516.2 763 42.7
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 4.0e-144 516.2 696 46.8
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 5.2e-144 515.8 712 44.2
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 8.8e-144 515.0 731 42.8
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.7e-142 509.6 727 45.7
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 4.8e-142 509.2 691 44.6
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 6.3e-142 508.8 653 48.1
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 8.2e-142 508.4 601 48.8
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 2.7e-140 503.4 692 44.5
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.2e-139 500.4 705 44.8
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 9.4e-138 495.0 773 42.0
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 6.8e-136 488.8 766 40.9
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.5e-135 487.6 766 40.7
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 2.6e-135 486.9 730 41.5
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.3e-134 484.6 764 41.8
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 6.3e-134 482.3 690 43.9
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.0e-132 477.2 748 41.6
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 5.9e-132 475.7 726 40.9
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 3.8e-131 473.0 714 42.7
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 3.8e-131 473.0 742 41.8
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 7.2e-130 468.8 705 44.3
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.0e-128 464.9 729 40.3
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 8.8e-128 461.8 711 41.6
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 3.7e-126 456.4 764 39.8
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 8.3e-126 455.3 734 40.2
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 3.5e-124 449.9 642 45.6
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 5.7e-119 432.6 851 36.4
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 4.9e-118 429.5 758 39.6
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 3.5e-116 423.3 813 36.0
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 4.6e-116 422.9 684 39.6
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.6e-116 422.9 700 39.9
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 5.9e-116 422.5 810 36.4
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 2.3e-115 420.6 704 38.1
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.6e-115 418.7 744 38.3
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.6e-111 407.1 838 34.7
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.3e-110 404.8 837 35.2
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 2.2e-110 404.1 670 39.9
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 8.3e-110 402.1 747 37.8
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 6.2e-105 386.0 492 47.6
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 6.0e-100 369.4 808 34.5
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 3.3e-98 363.6 532 43.6
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 5.8e-95 352.8 204 86.3
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 2.9e-94 350.5 716 36.2
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 5.4e-77 293.1 672 34.2
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 1.3e-75 288.5 698 34.1
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 2.8e-73 280.8 718 36.1
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 6.2e-73 279.6 701 33.1
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 3.4e-71 273.9 696 32.9
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-68 265.4 307 49.2
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.5e-66 258.5 623 32.9
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 5.6e-66 256.5 314 49.7
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.0e-64 250.4 684 32.5
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.7e-62 245.0 277 50.2
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 1.8e-56 224.9 666 32.4
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.2e-55 222.2 682 28.7
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 1.6e-52 211.8 314 41.4
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.2e-47 195.7 257 41.2
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 9.4e-45 186.0 684 31.3
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 2.3e-43 181.4 176 52.3
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 2.3e-43 181.4 176 52.3
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 2.9e-38 164.5 350 32.0
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 1.2e-36 159.1 176 47.7
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.5e-34 152.1 127 63.0
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.5e-26 125.6 129 56.6
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 2.6e-26 124.8 82 74.4
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 1.5e-18 99.0 212 33.0
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 1.5e-18 99.0 104 51.0
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 4.4e-18 97.4 96 52.1
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 4.4e-18 97.4 112 44.6
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 5.4e-16 90.5 100 46.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 6.3e-09 67.0 161 36.0


User provided reference genes

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