Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold32G13360 Striga asiatica HOM05D003401 ORTHO05D003906 2.7e-126 455.3 220 100.0
SGA_v2.0_scaffold90G27720 Striga asiatica HOM05D003401 ORTHO05D003906 5.6e-100 367.9 181 97.8
SGA_v2.0_scaffold169G38738 Striga asiatica HOM05D003401 ORTHO05D003906 1.3e-69 266.9 130 97.7
SalBow3G0329 Salvia bowleyana HOM05D003401 ORTHO05D003906 3.7e-59 232.3 172 63.4
FAN28G1357 Fragaria x ananassa HOM05D003401 ORTHO05D003906 3.1e-58 229.2 172 62.8
FvH4_1g17720 Fragaria vesca HOM05D003401 ORTHO05D003906 1.5e-57 226.9 172 63.4
FAN19G2988 Fragaria x ananassa HOM05D003401 ORTHO05D003906 5.9e-57 224.9 172 62.8
RcHm_v2.0_Chr2g0108051 Rosa chinensis HOM05D003401 ORTHO05D003906 7.7e-57 224.6 172 62.8
Gorai.008G083400 Gossypium raimondii HOM05D003401 ORTHO05D003906 1.0e-56 224.2 192 57.8
Thecc.01G072800 Theobroma cacao HOM05D003401 ORTHO05D003906 1.0e-56 224.2 173 62.4
TWI53G1432 Tripterygium wilfordii HOM05D003401 ORTHO05D003906 2.2e-56 223.0 172 62.2
Oeu017643.1 Olea europaea HOM05D003401 ORTHO05D003906 1.1e-55 220.7 172 62.2
SGA_v2.0_scaffold15G07458 Striga asiatica HOM05D003401 ORTHO05D003906 1.9e-55 219.9 192 55.7
Gohir.A12G077500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 3.2e-55 219.2 192 56.8
FAN26G0363 Fragaria x ananassa HOM05D003401 ORTHO05D003906 5.5e-55 218.4 191 57.1
MSTRG.23670 Avicennia marina HOM05D003401 ORTHO05D003906 1.6e-54 216.9 191 55.5
Nitab4.5_0000142g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 1.6e-54 216.9 191 55.5
CAN.G1075.38 Capsicum annuum HOM05D003401 ORTHO05D003906 3.6e-54 215.7 172 60.5
Cfa004133 Carpinus fangiana HOM05D003401 ORTHO05D003906 4.7e-54 215.3 192 57.3
THA.LOC104821200 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 1.0e-53 214.2 174 59.8
MSTRG.2818 Avicennia marina HOM05D003401 ORTHO05D003906 1.4e-53 213.8 195 56.9
COL.COLO4_11578 Corchorus olitorius HOM05D003401 ORTHO05D003906 1.4e-53 213.8 185 56.8
Nitab4.5_0002119g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 1.8e-53 213.4 191 56.0
Haze_15282 Corylus avellana HOM05D003401 ORTHO05D003906 3.0e-53 212.6 167 61.1
DCAR_010819 Daucus carota HOM05D003401 ORTHO05D003906 3.0e-53 212.6 192 56.2
Dinv26932 Davidia involucrata HOM05D003401 ORTHO05D003906 2.0e-52 209.9 192 56.8
Peaxi162Scf00548g00653 Petunia axillaris HOM05D003401 ORTHO05D003906 2.0e-52 209.9 180 57.2
MD02G1186200 Malus domestica HOM05D003401 ORTHO05D003906 2.6e-52 209.5 172 59.9
MD15G1297600 Malus domestica HOM05D003401 ORTHO05D003906 2.6e-52 209.5 203 54.2
Duzib147G0481 Durio zibethinus HOM05D003401 ORTHO05D003906 3.3e-52 209.1 173 57.8
CiPaw.02G002500 Carya illinoinensis HOM05D003401 ORTHO05D003906 4.4e-52 208.8 173 57.8
ClCG02G012620 Citrullus lanatus HOM05D003401 ORTHO05D003906 5.7e-52 208.4 195 53.8
Actinidia36431 Actinidia chinensis HOM05D003401 ORTHO05D003906 7.4e-52 208.0 174 59.2
Duzib264G0307 Durio zibethinus HOM05D003401 ORTHO05D003906 7.4e-52 208.0 173 56.6
Manes.12G114200 Manihot esculenta HOM05D003401 ORTHO05D003906 1.7e-51 206.8 192 56.2
Lj4A163G75 Lonicera japonica HOM05D003401 ORTHO05D003906 2.2e-51 206.5 190 55.3
Solyc02g092360.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 6.3e-51 204.9 172 57.0
Potri.005G148800 Populus trichocarpa HOM05D003401 ORTHO05D003906 8.2e-51 204.5 173 60.1
Lalb_Chr05g0213711 Lupinus albus HOM05D003401 ORTHO05D003906 2.4e-50 203.0 176 58.0
Sopen02g036910 Solanum pennellii HOM05D003401 ORTHO05D003906 2.4e-50 203.0 191 52.9
Dinv04047 Davidia involucrata HOM05D003401 ORTHO05D003906 4.1e-50 202.2 173 58.4
Glyma.11G047600 Glycine max HOM05D003401 ORTHO05D003906 5.3e-50 201.8 192 53.6
Glyma.01G194300 Glycine max HOM05D003401 ORTHO05D003906 9.1e-50 201.1 192 53.6
CSS0017127 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 1.2e-49 200.7 194 53.6
CSS0028872 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 1.2e-49 200.7 170 57.6
MELO3C020910.2 Cucumis melo HOM05D003401 ORTHO05D003906 1.2e-49 200.7 195 52.3
Migut.H00347 Erythranthe guttata HOM05D003401 ORTHO05D003906 1.6e-49 200.3 173 58.4
PGSC0003DMG400021417 Solanum tuberosum HOM05D003401 ORTHO05D003906 1.6e-49 200.3 172 58.1
PGR004G2146 Punica granatum HOM05D003401 ORTHO05D003906 2.0e-49 199.9 192 55.2
CSS0025614 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 3.5e-49 199.1 192 53.1
CSS0041603 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 5.9e-49 198.4 192 53.1
Manes.13G111500 Manihot esculenta HOM05D003401 ORTHO05D003906 5.9e-49 198.4 173 57.8
Sabra05G0118500 Salix brachista HOM05D003401 ORTHO05D003906 5.9e-49 198.4 173 57.8
Atru.chr3.1011_Atru.chr3.1012 Acer truncatum HOM05D003401 ORTHO05D003906 7.7e-49 198.0 192 53.1
Ciclev10025552m.g Citrus clementina HOM05D003401 ORTHO05D003906 7.7e-49 198.0 192 52.6
Sed0014153 Sechium edule HOM05D003401 ORTHO05D003906 2.2e-48 196.4 195 51.3
Oeu011987.2 Olea europaea HOM05D003401 ORTHO05D003906 2.9e-48 196.1 171 54.4
Phvul.003G234900 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 3.8e-48 195.7 193 52.3
TAR381G1581 Trochodendron aralioides HOM05D003401 ORTHO05D003906 3.8e-48 195.7 167 58.1
Lsat_1_v5_gn_4_161660 Lactuca sativa HOM05D003401 ORTHO05D003906 6.5e-48 194.9 188 52.1
MD02G1186100 Malus domestica HOM05D003401 ORTHO05D003906 6.5e-48 194.9 171 56.7
Peaxi162Scf00118g01926 Petunia axillaris HOM05D003401 ORTHO05D003906 6.5e-48 194.9 184 54.3
Aa31LG4G18330 Aethionema arabicum HOM05D003401 ORTHO05D003906 1.1e-47 194.1 182 54.9
Eucgr.I00703 Eucalyptus grandis HOM05D003401 ORTHO05D003906 1.1e-47 194.1 186 55.9
Sp5g12230 Schrenkiella parvula HOM05D003401 ORTHO05D003906 3.2e-47 192.6 184 51.6
VMungo1215G2501 Vigna mungo HOM05D003401 ORTHO05D003906 4.2e-47 192.2 192 51.6
EL10Ac6g15618 Beta vulgaris HOM05D003401 ORTHO05D003906 5.5e-47 191.8 192 53.6
Glyma.17G160700 Glycine max HOM05D003401 ORTHO05D003906 5.5e-47 191.8 192 51.6
Hund16401 Selenicereus undatus HOM05D003401 ORTHO05D003906 5.5e-47 191.8 192 55.2
Lalb_Chr09g0334091 Lupinus albus HOM05D003401 ORTHO05D003906 9.4e-47 191.0 173 53.2
AUR62004010 Chenopodium quinoa HOM05D003401 ORTHO05D003906 1.2e-46 190.7 192 54.2
AUR62040237 Chenopodium quinoa HOM05D003401 ORTHO05D003906 1.2e-46 190.7 192 54.2
Prupe.6G220400 Prunus persica HOM05D003401 ORTHO05D003906 1.6e-46 190.3 156 57.7
Ah.03g140570 Amaranthus hybridus HOM05D003401 ORTHO05D003906 2.1e-46 189.9 172 55.8
VMungo0251G1011 Vigna mungo HOM05D003401 ORTHO05D003906 2.1e-46 189.9 193 51.8
Nitab4.5_0001417g0040 Nicotiana tabacum HOM05D003401 ORTHO05D003906 8.0e-46 188.0 193 50.8
HanXRQChr12g0373051 Helianthus annuus HOM05D003401 ORTHO05D003906 1.8e-45 186.8 172 54.7
Lj2g0017752 Lotus japonicus HOM05D003401 ORTHO05D003906 2.3e-45 186.4 193 52.3
Cpa.g.sc6.15 Carica papaya HOM05D003401 ORTHO05D003906 3.0e-45 186.0 135 63.7
Rhsim10G0099500 Rhododendron simsii HOM05D003401 ORTHO05D003906 3.0e-45 186.0 187 50.8
HanXRQChr12g0373041 Helianthus annuus HOM05D003401 ORTHO05D003906 4.0e-45 185.7 172 54.1
GSVIVG01000105001 Vitis vinifera HOM05D003401 ORTHO05D003906 4.0e-45 185.7 133 67.7
Thhalv10010347m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 5.2e-45 185.3 191 52.4
Nitab4.5_0006813g0020 Nicotiana tabacum HOM05D003401 ORTHO05D003906 5.2e-45 185.3 165 56.4
Medtr5g015460 Medicago truncatula HOM05D003401 ORTHO05D003906 8.8e-45 184.5 175 55.4
Ca_24692_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 1.2e-44 184.1 177 54.8
Phvul.002G010600 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 1.5e-44 183.7 192 49.5
A09p43030 Brassica napus HOM05D003401 ORTHO05D003906 2.0e-44 183.3 184 50.5
BraA09t39772Z Brassica rapa HOM05D003401 ORTHO05D003906 2.0e-44 183.3 184 50.5
ECA232G0883 Erigeron canadensis HOM05D003401 ORTHO05D003906 2.0e-44 183.3 192 50.0
Sed0011165 Sechium edule HOM05D003401 ORTHO05D003906 2.0e-44 183.3 194 51.0
AT3G49880 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 2.6e-44 183.0 186 50.0
Cc07_g07100 Coffea canephora HOM05D003401 ORTHO05D003906 2.6e-44 183.0 191 51.8
Psat0s281g0040 Pisum sativum HOM05D003401 ORTHO05D003906 2.6e-44 183.0 174 54.6
THA.LOC104827628 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 5.7e-44 181.8 173 53.8
Actinidia11982 Actinidia chinensis HOM05D003401 ORTHO05D003906 7.5e-44 181.4 133 65.4
AL5G29890 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 7.5e-44 181.4 188 49.5
ATR1153G046 Amborella trichopoda HOM05D003401 ORTHO05D003906 9.7e-44 181.0 185 51.4
Nn5g30596 Nelumbo nucifera HOM05D003401 ORTHO05D003906 9.7e-44 181.0 168 54.8
BcaC07g39454 Brassica carinata HOM05D003401 ORTHO05D003906 1.3e-43 180.6 186 48.9
C08p24910 Brassica napus HOM05D003401 ORTHO05D003906 1.7e-43 180.3 184 49.5
BolC8t50109H Brassica oleracea HOM05D003401 ORTHO05D003906 1.7e-43 180.3 184 49.5
Lj4g0026628 Lotus japonicus HOM05D003401 ORTHO05D003906 2.2e-43 179.9 168 54.2
BcaB01g00655 Brassica carinata HOM05D003401 ORTHO05D003906 2.8e-43 179.5 184 49.5
Carub.0005s1624 Capsella rubella HOM05D003401 ORTHO05D003906 2.8e-43 179.5 186 50.0
TAR625G1105 Trochodendron aralioides HOM05D003401 ORTHO05D003906 2.8e-43 179.5 193 50.3
CARHR158960 Cardamine hirsuta HOM05D003401 ORTHO05D003906 4.8e-43 178.7 197 48.7
Aqoxy6G02609 Aquilegia oxysepala HOM05D003401 ORTHO05D003906 1.1e-42 177.6 186 51.6
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 1.1e-42 177.6 195 51.3
PGSC0003DMG400009062 Solanum tuberosum HOM05D003401 ORTHO05D003906 1.1e-42 177.6 180 50.6
Gohir.D03G028900 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.4e-42 177.2 173 51.4
Eucgr.H02307 Eucalyptus grandis HOM05D003401 ORTHO05D003906 2.4e-42 176.4 176 53.4
Gohir.A02G151500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 3.1e-42 176.0 173 50.9
Sc16g0002870 Simmondsia chinensis HOM05D003401 ORTHO05D003906 9.1e-42 174.5 116 69.8
Sopen03g007790 Solanum pennellii HOM05D003401 ORTHO05D003906 1.6e-41 173.7 162 53.1
BcaB05g23171 Brassica carinata HOM05D003401 ORTHO05D003906 2.0e-41 173.3 194 47.4
Gorai.003G030500 Gossypium raimondii HOM05D003401 ORTHO05D003906 2.7e-41 172.9 173 49.7
A01p24400 Brassica napus HOM05D003401 ORTHO05D003906 3.5e-41 172.6 190 49.5
BraA01t02353Z Brassica rapa HOM05D003401 ORTHO05D003906 4.5e-41 172.2 190 49.5
PSO675G1608 Papaver somniferum HOM05D003401 ORTHO05D003906 4.5e-41 172.2 179 51.4
arahy.Tifrunner.gnm1.ann1.DKM4K2 Arachis hypogaea HOM05D003401 ORTHO05D003906 6.5e-40 168.3 169 50.3
MELO3C020908.2 Cucumis melo HOM05D003401 ORTHO05D003906 8.5e-40 167.9 198 46.0
CAN.G278.15 Capsicum annuum HOM05D003401 ORTHO05D003906 1.1e-39 167.5 175 50.3
Thhalv10004148m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 1.5e-39 167.2 200 45.0
PSO017G3176 Papaver somniferum HOM05D003401 ORTHO05D003906 1.5e-39 167.2 169 50.9
arahy.Tifrunner.gnm1.ann1.Q6V9VS Arachis hypogaea HOM05D003401 ORTHO05D003906 2.5e-39 166.4 172 48.8
PSO170G0024 Papaver somniferum HOM05D003401 ORTHO05D003906 7.2e-39 164.9 169 50.3
AL8G43760 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 1.2e-38 164.1 181 46.4
Sp2g29110 Schrenkiella parvula HOM05D003401 ORTHO05D003906 1.2e-38 164.1 180 47.2
unitig_899.g14895 Utricularia gibba HOM05D003401 ORTHO05D003906 2.1e-38 163.3 116 64.7
Solyc03g043970.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 3.6e-38 162.5 156 52.6
Aa31LG1G16090 Aethionema arabicum HOM05D003401 ORTHO05D003906 8.0e-38 161.4 178 48.9
Carub.0008s2693 Capsella rubella HOM05D003401 ORTHO05D003906 8.0e-38 161.4 178 46.1
PGR102G3082 Punica granatum HOM05D003401 ORTHO05D003906 8.0e-38 161.4 179 50.8
CsaV3_2G016740 Cucumis sativus L. HOM05D003401 ORTHO05D003906 2.3e-37 159.8 191 45.5
AT5G67540 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 3.0e-37 159.5 202 44.1
BcaC09g49981 Brassica carinata HOM05D003401 ORTHO05D003906 3.0e-37 159.5 189 46.6
C01p30420 Brassica napus HOM05D003401 ORTHO05D003906 3.0e-37 159.5 189 46.6
BolC1t02985H Brassica oleracea HOM05D003401 ORTHO05D003906 3.0e-37 159.5 189 46.6
CARHR280060 Cardamine hirsuta HOM05D003401 ORTHO05D003906 3.4e-36 156.0 179 44.7
BraA06t26219Z Brassica rapa HOM05D003401 ORTHO05D003906 5.7e-36 155.2 181 47.0
A06p32870 Brassica napus HOM05D003401 ORTHO05D003906 7.5e-36 154.8 181 47.0
C03p59600 Brassica napus HOM05D003401 ORTHO05D003906 1.3e-35 154.1 180 47.2
BolC3t18223H Brassica oleracea HOM05D003401 ORTHO05D003906 1.3e-35 154.1 180 47.2
Ca_22105_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 3.7e-35 152.5 169 49.7
Peaxi162Scf00016g10134 Petunia axillaris HOM05D003401 ORTHO05D003906 5.4e-34 148.7 173 48.6
Zm00001eb007800 Zea mays HOM05D003401 ORTHO05D003906 1.2e-33 147.5 170 45.3
Zm00001eb400800 Zea mays HOM05D003401 ORTHO05D003906 1.2e-33 147.5 170 45.9
TPR.G9942 Trifolium pratense HOM05D003401 ORTHO05D003906 1.6e-33 147.1 102 65.7
PSO541G4016 Papaver somniferum HOM05D003401 ORTHO05D003906 7.7e-33 144.8 131 55.0
Os12g0406100 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 1.0e-32 144.4 166 44.6
CDE06G2486 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 2.5e-31 139.8 166 45.8
TPR.G24262 Trifolium pratense HOM05D003401 ORTHO05D003906 9.5e-31 137.9 183 45.4
PGSC0003DMG400025929 Solanum tuberosum HOM05D003401 ORTHO05D003906 1.2e-30 137.5 173 46.8
Os01g0879400 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 6.1e-30 135.2 187 40.1
Glyma.05G105700 Glycine max HOM05D003401 ORTHO05D003906 1.4e-29 134.0 197 40.6
Medtr4g097110 Medicago truncatula HOM05D003401 ORTHO05D003906 1.8e-29 133.7 185 44.9
CDE07G0805 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 3.0e-29 132.9 124 51.6
Cc02_g18210 Coffea canephora HOM05D003401 ORTHO05D003906 3.0e-29 132.9 173 45.1
Solyc01g109050.2 Solanum lycopersicum HOM05D003401 ORTHO05D003906 4.0e-29 132.5 172 43.6
Sopen01g051250 Solanum pennellii HOM05D003401 ORTHO05D003906 6.8e-29 131.7 172 43.6
Nitab4.5_0001401g0210 Nicotiana tabacum HOM05D003401 ORTHO05D003906 2.6e-28 129.8 175 44.0
CAN.G322.85 Capsicum annuum HOM05D003401 ORTHO05D003906 3.4e-28 129.4 172 41.3
Nitab4.5_0008194g0090 Nicotiana tabacum HOM05D003401 ORTHO05D003906 9.8e-28 127.9 138 47.8
Gohir.D12G075700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 5.4e-26 122.1 76 71.1
Psat0s4670g0040 Pisum sativum HOM05D003401 ORTHO05D003906 3.5e-25 119.4 175 42.9
Oeu054197.1 Olea europaea HOM05D003401 ORTHO05D003906 4.3e-23 112.5 76 63.2
CDE04G3602 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 1.2e-22 110.9 88 58.0
Oeu000281.1 Olea europaea HOM05D003401 ORTHO05D003906 1.0e-21 107.8 168 39.9
Migut.B00291 Erythranthe guttata HOM05D003401 ORTHO05D003906 8.9e-21 104.8 146 41.1
Gohir.A10G184500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 2.9e-19 99.8 96 53.1
Gohir.D10G191700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 2.9e-19 99.8 104 48.1
SalBow6G5146 Salvia bowleyana HOM05D003401 ORTHO05D003906 6.4e-19 98.6 170 38.2
Gorai.011G214500 Gossypium raimondii HOM05D003401 ORTHO05D003906 1.8e-18 97.1 119 44.5
Zm00001eb145850 Zea mays HOM05D003401 ORTHO05D003906 2.0e-17 93.6 68 58.8
Pp3c24_13530 Physcomitrium patens HOM05D003401 ORTHO05D003906 3.5e-17 92.8 189 31.7
SalBow6G2088 Salvia bowleyana HOM05D003401 ORTHO05D003906 1.3e-16 90.9 166 38.0
Nn1g04550 Nelumbo nucifera HOM05D003401 ORTHO05D003906 5.0e-16 89.0 67 56.7
Mapoly0190s0009 Marchantia polymorpha HOM05D003401 ORTHO05D003906 6.2e-14 82.0 174 31.6
SMO228G0195 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 8.0e-14 81.6 86 41.9
BcaB02g09914 Brassica carinata HOM05D003401 ORTHO05D003906 7.5e-12 75.1 128 36.7
SMO203G0154 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 7.5e-12 75.1 65 49.2
Pp3c24_11410 Physcomitrium patens HOM05D003401 ORTHO05D003906 9.8e-12 74.7 178 28.7
CBR_g103 Chara braunii HOM05D003401 ORTHO05D003906 2.4e-10 70.1 54 57.4
CBR_g36888 Chara braunii HOM05D003401 ORTHO05D003906 2.7e-09 66.6 55 52.7


User provided reference genes

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