Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 0.0e+00 1468.4 782 100.0
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 0.0e+00 1242.6 801 78.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 0.0e+00 1111.7 804 70.6
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 4.9e-308 1060.8 782 68.0
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 1.0e-300 1036.6 668 74.7
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 9.3e-299 1030.0 670 74.0
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 6.5e-292 1007.3 652 74.4
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 7.2e-291 1003.8 651 74.2
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.4e-289 999.6 671 71.4
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 8.8e-289 996.9 686 70.4
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.1e-288 996.5 662 71.8
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 4.4e-288 994.6 649 72.3
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.7e-287 992.6 666 71.8
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 6.3e-287 990.7 666 71.6
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.4e-286 988.8 673 70.6
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 3.1e-286 988.4 677 70.3
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 4.5e-285 984.6 664 70.6
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 2.9e-284 981.9 665 70.4
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 3.8e-284 981.5 664 70.8
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.1e-283 979.9 664 70.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 1.4e-283 979.5 654 72.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 9.4e-283 976.9 667 70.8
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.6e-282 976.1 664 70.3
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 2.1e-282 975.7 669 69.8
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 3.9e-281 971.5 644 72.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 2.6e-280 968.8 655 71.6
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 7.4e-280 967.2 640 71.9
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.3e-279 966.5 683 69.1
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.1e-278 963.4 656 69.5
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 1.8e-278 962.6 714 66.1
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 4.1e-278 961.4 668 68.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 2.0e-277 959.1 668 69.3
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 1.7e-276 956.1 643 71.7
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 5.0e-276 954.5 636 71.4
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 9.4e-275 950.3 653 69.4
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 6.1e-274 947.6 648 69.4
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 5.2e-273 944.5 646 71.7
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.5e-272 943.0 672 67.7
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 4.4e-272 941.4 656 69.1
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 1.7e-271 939.5 629 71.7
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 2.8e-271 938.7 666 67.3
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.1e-270 936.8 651 70.7
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.4e-270 936.4 670 66.3
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.8e-270 936.0 664 67.6
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 3.1e-270 935.3 669 66.5
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 2.7e-269 932.2 664 67.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 4.5e-269 931.4 697 65.1
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 5.9e-269 931.0 647 68.3
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 7.7e-269 930.6 669 66.8
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 1.5e-267 926.4 663 67.7
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 3.2e-267 925.2 668 67.1
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 5.5e-267 924.5 649 68.9
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 1.6e-266 922.9 663 67.4
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 8.0e-266 920.6 654 67.7
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 1.4e-265 919.8 687 63.5
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 1.2e-264 916.8 592 73.6
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.0e-264 916.0 656 69.4
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 1.7e-263 912.9 649 66.4
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 4.8e-263 911.4 657 67.6
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.6e-261 906.4 683 64.7
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 3.5e-261 905.2 660 66.4
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 3.5e-261 905.2 660 66.4
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 3.5e-261 905.2 660 66.4
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 1.0e-260 903.7 651 66.4
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.3e-260 903.3 667 64.5
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 2.3e-260 902.5 644 69.9
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 9.5e-259 897.1 652 66.3
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 4.7e-258 894.8 662 65.1
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 4.7e-258 894.8 712 62.5
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 1.8e-257 892.9 649 66.1
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.8e-257 892.9 653 64.8
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 3.0e-257 892.1 709 59.9
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 4.0e-257 891.7 662 65.3
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 4.0e-257 891.7 648 66.2
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 6.8e-257 891.0 662 65.1
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 8.9e-257 890.6 658 66.1
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.0e-256 889.4 662 65.1
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 4.4e-256 888.3 662 65.1
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.7e-255 886.3 658 65.7
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 6.3e-255 884.4 677 64.7
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.4e-254 883.2 691 63.0
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.4e-254 882.5 642 67.3
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 9.2e-254 880.6 658 65.3
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 1.3e-252 876.7 647 65.2
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 3.3e-251 872.1 660 64.7
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 1.4e-249 866.7 669 61.9
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 1.7e-247 859.8 658 64.6
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.9e-247 859.0 670 62.5
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 2.9e-247 859.0 670 62.5
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 6.4e-247 857.8 643 65.0
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.6e-245 853.2 649 64.3
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 3.5e-245 852.0 649 63.9
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 3.0e-244 849.0 596 68.8
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 3.6e-242 842.0 584 71.1
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 6.2e-242 841.3 735 59.2
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 3.4e-240 835.5 640 63.6
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 9.8e-240 833.9 673 61.1
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.9e-238 829.7 671 61.7
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 7.0e-238 827.8 569 69.4
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 6.8e-233 811.2 618 65.2
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.2e-229 800.4 668 60.6
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 1.3e-228 797.0 723 56.4
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.4e-225 786.2 558 69.7
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 2.2e-223 779.6 697 55.5
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 3.2e-222 775.8 661 58.7
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.2e-222 775.4 770 54.2
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 7.1e-222 774.6 666 59.2
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.6e-218 763.5 673 55.9
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 6.9e-217 758.1 641 57.9
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.9e-216 754.2 651 60.5
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.8e-215 752.3 650 59.1
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.2e-205 720.7 697 52.7
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 7.9e-205 718.0 480 72.3
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 1.0e-204 717.6 670 52.7
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 4.3e-203 712.2 572 62.9
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 9.0e-201 704.5 583 60.9
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 5.8e-200 701.8 658 55.6
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 6.0e-197 691.8 708 52.7
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 6.5e-183 645.2 421 73.6
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 3.2e-182 642.9 590 54.1
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 3.9e-180 636.0 464 66.4
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 4.8e-178 629.0 662 51.5
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 4.8e-178 629.0 478 65.3
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.8e-177 627.1 463 65.2
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 6.1e-173 612.1 508 60.8
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 5.7e-171 605.5 483 62.1
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.1e-169 599.7 487 61.0
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 1.1e-163 581.3 685 46.4
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 9.7e-163 578.2 458 59.8
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.1e-161 573.2 458 59.8
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 7.7e-152 542.0 760 40.0
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.2e-136 491.5 660 39.1
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 6.6e-135 485.7 477 53.5
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 2.9e-130 470.3 473 53.3
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 1.2e-128 464.9 673 39.2
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.9e-118 431.0 652 37.0
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.1e-108 397.1 348 57.8
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 2.3e-103 380.9 450 45.6
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 7.6e-91 339.3 179 86.6
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 2.2e-90 337.8 255 63.1
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 2.4e-89 334.3 178 85.4
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.1e-84 318.9 180 78.3
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 2.0e-83 314.7 169 82.2
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 6.5e-74 283.1 170 74.7
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 1.1e-73 282.3 179 74.3
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.6e-72 278.5 170 72.4
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.5e-70 271.9 156 76.9
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 3.4e-67 260.8 177 66.7
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.8e-63 248.4 136 78.7
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 6.3e-61 240.0 148 76.4
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.5e-59 233.8 152 71.1
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 1.1e-54 219.2 151 67.5
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 2.4e-52 211.5 103 91.3
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.2e-41 174.1 111 73.9
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.6e-40 172.2 113 70.8
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 3.6e-40 171.0 84 89.3
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 6.5e-34 150.2 101 70.3
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.2e-30 139.4 79 77.2
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.7e-29 134.4 72 84.7
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 7.0e-28 130.2 75 80.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 5.6e-25 120.6 72 75.0
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 6.1e-24 117.1 142 40.8
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 2.0e-22 112.1 85 60.0
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 4.9e-21 107.5 153 40.5
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 2.1e-16 92.0 57 73.7
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 2.2e-13 82.0 50 74.0
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 3.2e-12 78.2 50 64.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 1.1e-09 69.7 44 70.5
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 4.7e-08 64.3 376 23.9
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 5.8e-06 57.4 62 50.0
SGA_v2.0_scaffold476G52142 Striga asiatica HOM05D004134 ORTHO05D399067 5.8e-06 57.4 30 80.0


User provided reference genes

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