Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 0.0e+00 1890.5 960 100.0
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 0.0e+00 1149.0 982 64.7
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 0.0e+00 1125.5 969 64.0
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 1.1e-306 1056.6 854 67.7
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 2.3e-270 936.0 979 54.2
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 5.0e-270 934.9 996 53.8
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 4.9e-265 918.3 978 53.1
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 8.3e-265 917.5 979 52.9
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 7.0e-264 914.4 913 55.9
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.5e-263 912.1 853 58.1
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 5.9e-263 911.4 979 53.0
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 3.9e-262 908.7 950 55.5
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.7e-257 893.3 967 53.4
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 4.1e-256 888.6 979 52.0
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 5.4e-256 888.3 980 51.7
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 9.2e-256 887.5 1016 51.5
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 9.2e-256 887.5 981 52.2
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 1.6e-255 886.7 974 53.5
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 1.7e-254 883.2 1001 52.4
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 3.3e-253 879.0 975 52.1
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 5.6e-253 878.2 1025 51.1
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 1.2e-252 877.1 962 52.9
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 2.1e-252 876.3 1025 50.8
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 8.9e-251 870.9 931 54.1
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 2.2e-249 866.3 1057 49.5
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 3.5e-247 859.0 984 50.7
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 7.8e-247 857.8 939 53.2
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.3e-246 856.3 924 53.1
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 1.1e-243 847.4 855 55.2
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 2.0e-242 843.2 884 53.8
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 3.4e-242 842.4 931 51.9
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 4.4e-242 842.0 976 50.2
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.4e-240 837.0 1010 49.1
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 7.8e-239 831.2 959 50.7
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 3.9e-238 828.9 911 51.0
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 1.1e-237 827.4 938 52.2
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 1.5e-237 827.0 950 51.1
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.3e-237 825.5 856 54.2
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 9.6e-237 824.3 856 54.1
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 2.8e-236 822.8 928 51.1
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 2.4e-235 819.7 922 51.0
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 2.4e-235 819.7 941 50.6
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 4.4e-234 815.5 938 51.1
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 1.3e-233 813.9 972 50.7
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 7.1e-232 808.1 1007 47.4
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 4.6e-231 805.4 944 50.8
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 4.6e-231 805.4 949 50.5
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 7.8e-231 804.7 950 50.2
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 3.0e-230 802.7 1023 47.8
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 1.1e-229 800.8 873 52.0
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 1.9e-229 800.0 937 49.7
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 4.3e-229 798.9 846 52.5
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 6.2e-228 795.0 933 50.3
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 2.4e-227 793.1 857 51.9
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 5.3e-227 792.0 949 50.5
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 2.0e-226 790.0 751 57.9
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 8.4e-225 784.6 970 48.8
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 8.4e-225 784.6 895 50.8
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 1.9e-224 783.5 862 53.2
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 1.0e-222 777.7 977 48.3
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 5.1e-222 775.4 977 47.9
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 1.9e-221 773.5 935 48.9
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 1.6e-220 770.4 982 48.5
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 6.2e-220 768.5 948 48.3
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 6.9e-219 765.0 892 50.1
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 1.5e-218 763.8 818 53.3
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 4.5e-218 762.3 988 47.2
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 4.9e-217 758.8 922 47.6
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.5e-215 752.7 1011 45.9
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 6.0e-215 751.9 719 57.4
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.5e-213 747.3 838 51.7
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 3.3e-213 746.1 964 47.0
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 5.6e-213 745.3 930 47.6
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 3.7e-212 742.7 923 47.3
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 6.2e-212 741.9 944 47.4
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 1.1e-211 741.1 938 46.7
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 1.8e-211 740.3 906 48.8
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 4.0e-211 739.2 942 47.0
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 1.2e-210 737.6 873 50.9
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 5.8e-210 735.3 936 47.6
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 1.2e-207 727.6 930 46.6
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.6e-207 727.2 935 47.3
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 1.8e-206 723.8 993 46.4
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 2.3e-206 723.4 934 46.7
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 8.2e-204 714.9 934 46.0
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.4e-203 714.1 934 46.1
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 2.4e-203 713.4 869 49.0
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 4.1e-203 712.6 680 56.2
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 1.9e-200 703.7 967 44.8
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 4.2e-200 702.6 924 47.2
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 7.9e-199 698.4 935 46.1
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 1.4e-198 697.6 947 45.7
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 1.0e-190 671.4 960 43.9
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 4.8e-188 662.5 845 46.7
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.0e-185 652.5 706 52.8
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 7.4e-181 638.6 889 44.0
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 2.2e-177 627.1 965 42.0
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 1.5e-176 624.4 718 51.4
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 4.4e-173 612.8 670 51.8
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.8e-171 607.4 620 53.5
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 2.7e-162 577.0 649 51.6
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 4.7e-151 539.7 1064 36.8
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.1e-151 539.3 931 39.7
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 6.4e-148 529.3 937 39.6
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 3.9e-137 493.4 956 36.9
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 9.5e-136 488.8 854 37.7
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 9.6e-112 409.1 486 48.6
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 1.4e-102 378.6 1206 28.4
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 2.5e-96 357.8 262 65.6
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 1.4e-57 229.2 531 32.2
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 8.5e-52 209.9 288 44.8
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 4.8e-47 194.1 304 41.8
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 5.9e-45 187.2 385 33.5
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 5.9e-45 187.2 386 32.9
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 4.9e-31 141.0 315 31.4
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 8.3e-31 140.2 101 64.4
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 5.6e-27 127.5 383 27.7
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 3.2e-22 111.7 457 24.5
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 9.5e-19 100.1 208 37.0
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 6.0e-13 80.9 181 33.7
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 8.6e-12 77.0 91 48.4
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 7.1e-06 57.4 109 37.6


User provided reference genes

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