Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 0.0e+00 1526.1 770 100.0
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 0.0e+00 1221.8 801 78.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 0.0e+00 1190.6 781 77.2
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 0.0e+00 1128.2 773 72.8
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 0.0e+00 1079.7 751 72.4
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 0.0e+00 1075.5 770 70.6
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 5.2e-302 1040.8 708 71.6
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 8.9e-302 1040.0 745 69.3
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 2.6e-301 1038.5 724 70.7
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 1.1e-299 1033.1 725 70.5
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 1.9e-299 1032.3 686 73.6
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 9.5e-296 1020.0 714 70.0
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.4e-294 1016.1 700 70.3
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 1.8e-294 1015.8 737 68.2
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 1.8e-294 1015.8 671 72.3
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 4.9e-292 1007.7 683 70.9
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 6.4e-292 1007.3 679 71.3
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.1e-291 1006.5 679 71.3
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 1.4e-291 1006.1 627 75.4
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.4e-291 1005.4 669 72.0
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 4.1e-291 1004.6 706 69.7
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 5.4e-291 1004.2 707 69.6
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 4.6e-290 1001.1 707 69.6
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 6.0e-290 1000.7 705 69.6
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 1.3e-289 999.6 679 70.5
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 8.6e-289 996.9 703 70.1
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 5.6e-288 994.2 700 70.4
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 9.5e-288 993.4 649 71.6
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 1.6e-287 992.6 691 70.6
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 1.8e-286 989.2 636 73.0
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 1.8e-286 989.2 761 66.4
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 5.2e-286 987.6 629 73.6
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 2.0e-285 985.7 660 72.7
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 4.4e-285 984.6 662 71.1
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.9e-283 979.2 626 73.5
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 3.2e-283 978.4 712 68.0
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 6.0e-282 974.2 730 66.3
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 8.7e-281 970.3 765 63.4
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 2.5e-280 968.8 628 72.0
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 5.6e-280 967.6 713 67.3
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 7.3e-280 967.2 701 69.0
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 1.6e-279 966.1 694 68.3
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 6.2e-279 964.1 627 72.7
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 1.1e-278 963.4 710 66.5
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 4.0e-278 961.4 731 65.8
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 5.3e-278 961.1 666 68.9
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 9.0e-278 960.3 714 66.0
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 1.5e-277 959.5 721 65.2
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 2.0e-277 959.1 690 66.4
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 4.4e-277 958.0 630 72.1
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 2.2e-276 955.7 637 72.5
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 1.2e-274 949.9 709 67.1
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 1.7e-273 946.0 651 68.0
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 8.7e-273 943.7 573 76.8
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 2.5e-272 942.2 699 66.2
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 3.3e-272 941.8 704 66.1
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.6e-271 938.3 630 68.7
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 8.1e-271 937.2 683 64.6
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 4.0e-270 934.9 683 66.6
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 4.5e-269 931.4 630 70.8
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-269 931.0 643 69.8
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 5.8e-269 931.0 701 65.2
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 9.9e-269 930.2 629 70.9
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 9.9e-269 930.2 817 61.1
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 1.7e-268 929.5 732 65.2
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 1.7e-268 929.5 732 65.2
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 1.7e-268 929.5 732 65.2
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 6.4e-268 927.5 643 69.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 1.4e-267 926.4 761 63.2
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 1.4e-267 926.4 753 62.2
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 1.4e-267 926.4 772 63.1
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.9e-267 926.0 710 67.0
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 5.4e-267 924.5 654 70.2
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 7.1e-267 924.1 761 63.3
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.2e-266 923.3 634 67.5
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 3.9e-265 918.3 793 60.5
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 5.6e-264 914.4 718 64.6
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 4.8e-263 911.4 719 64.7
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 8.1e-263 910.6 783 60.3
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 4.0e-262 908.3 759 62.6
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.4e-260 901.0 780 61.0
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.1e-258 896.0 770 60.9
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 2.3e-257 892.5 719 63.0
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.3e-257 892.5 689 62.1
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 3.9e-257 891.7 723 62.4
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 2.5e-256 889.0 638 67.6
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 9.6e-256 887.1 782 59.7
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 1.3e-255 886.7 630 67.1
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 6.2e-255 884.4 630 67.0
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 5.3e-254 881.3 714 63.0
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.5e-253 879.8 644 66.0
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 2.0e-253 879.4 620 71.5
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 1.4e-251 873.2 695 63.9
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 9.3e-251 870.5 705 62.4
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 2.7e-250 869.0 550 73.5
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 1.5e-248 863.2 652 65.0
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 2.8e-247 859.0 717 61.5
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 3.4e-245 852.0 701 62.1
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 2.5e-243 845.9 687 63.2
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.7e-241 837.8 766 57.7
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.3e-239 831.2 770 58.3
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.0e-236 823.9 706 61.3
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.9e-235 819.7 687 58.4
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 1.3e-228 797.0 698 59.3
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 1.9e-227 793.1 653 58.7
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 4.2e-227 792.0 768 56.4
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.0e-225 787.3 698 61.7
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 3.9e-225 785.4 697 58.7
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 2.6e-224 782.7 662 59.7
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 1.2e-218 763.8 632 58.2
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.2e-216 757.3 690 54.6
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 4.5e-213 745.3 668 54.0
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 1.0e-212 744.2 564 65.1
Sopen01g046140 Solanum pennellii HOM05D004134 ORTHO05D005240 8.0e-210 734.6 571 67.3
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 2.3e-209 733.0 697 56.0
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 8.8e-209 731.1 862 50.9
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 1.7e-207 726.9 558 64.9
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 2.3e-204 716.5 776 52.1
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 5.2e-193 678.7 579 57.3
Peaxi162Scf00011g00938 Petunia axillaris HOM05D004134 ORTHO05D005240 1.4e-185 654.1 466 69.5
Cc07_g19170 Coffea canephora HOM05D004134 ORTHO05D005240 3.7e-183 646.0 440 69.8
ClCG08G001520 Citrullus lanatus HOM05D004134 ORTHO05D005240 1.3e-180 637.5 485 65.2
RcHm_v2.0_Chr7g0241521 Rosa chinensis HOM05D004134 ORTHO05D005240 1.6e-178 630.6 520 61.7
Lalb_Chr21g0308281 Lupinus albus HOM05D004134 ORTHO05D005240 1.4e-177 627.5 521 61.0
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 5.2e-177 625.5 659 51.7
AUR62027202 Chenopodium quinoa HOM05D004134 ORTHO05D005240 8.3e-175 618.2 509 61.5
Ah.09g229700 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.4e-174 615.5 463 64.4
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 5.1e-172 609.0 666 48.0
ATR0681G288 Amborella trichopoda HOM05D004134 ORTHO05D005240 3.8e-167 592.8 427 63.9
ATR0598G150 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.1e-165 587.0 427 63.9
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 9.9e-160 568.2 741 41.8
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 1.4e-142 511.1 657 41.6
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 5.9e-136 489.2 668 40.9
AUR62003266 Chenopodium quinoa HOM05D004134 ORTHO05D005240 3.8e-135 486.5 511 52.6
HPP92_014183 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.0e-132 478.4 491 53.6
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 6.7e-124 449.1 637 38.3
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 1.4e-118 431.4 329 62.9
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 4.4e-107 393.3 441 47.4
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 1.0e-95 355.5 189 86.8
Cpa.g.sc5814.1 Carica papaya HOM05D004134 ORTHO05D005240 5.0e-95 353.2 225 71.6
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 2.6e-91 340.9 194 78.4
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 3.4e-91 340.5 183 85.2
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.5e-83 315.1 169 82.2
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 6.6e-79 299.7 193 73.1
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 8.0e-77 292.7 185 72.4
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-75 288.1 185 70.3
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 8.6e-71 272.7 156 76.9
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.5e-70 271.2 185 66.5
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.4e-65 255.4 176 67.6
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 6.0e-64 250.0 136 79.4
ECA236G2574 Erigeron canadensis HOM05D004134 ORTHO05D005240 1.8e-60 238.4 181 68.5
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 3.9e-55 220.7 151 68.2
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 4.0e-52 210.7 103 90.3
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 4.2e-41 174.1 111 73.9
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 1.6e-40 172.2 113 70.8
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 1.6e-40 172.2 84 90.5
TAR087G0001 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.4e-33 149.1 101 70.3
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 8.7e-31 139.8 79 77.2
BcaC01g05161 Brassica carinata HOM05D004134 ORTHO05D005240 1.5e-30 139.0 113 54.0
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 3.7e-29 134.4 72 84.7
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 6.9e-28 130.2 75 80.0
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 5.5e-25 120.6 72 75.0
TPR.G18539 Trifolium pratense HOM05D001024 ORTHO05D000878 8.7e-23 113.2 85 61.2
Psat2g083520 Pisum sativum HOM05D004134 ORTHO05D023219 5.3e-20 104.0 153 39.2
SGA_v2.0_scaffold94G28534 Striga asiatica HOM05D004134 ORTHO05D023219 2.7e-16 91.7 53 79.2
SGA_v2.0_scaffold2705G54186 Striga asiatica HOM05D004134 ORTHO05D023219 3.7e-13 81.3 46 80.4
Ah.03g141930 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.8e-12 79.0 50 66.0
Atru.chr11.847 Acer truncatum HOM05D004134 ORTHO05D023219 5.5e-09 67.4 44 68.2
QL05p027149 Quercus lobata HOM05D003006 ORTHO05D003438 2.1e-08 65.5 268 25.0
Sabra01G0062700 Salix brachista HOM05D000645 ORTHO05D000494 2.1e-08 65.5 360 22.5
COL.COLO4_34985 Corchorus olitorius HOM05D003006 ORTHO05D003438 8.8e-07 60.1 268 24.6
TAR636G2670 Trochodendron aralioides HOM05D003006 ORTHO05D003438 2.0e-06 58.9 268 24.6
Dinv38082 Davidia involucrata HOM05D003006 ORTHO05D003438 2.6e-06 58.5 268 23.5
TAR625G1157 Trochodendron aralioides HOM05D003006 ORTHO05D003438 2.6e-06 58.5 268 24.6
Duzib187G1875 Durio zibethinus HOM05D003006 ORTHO05D003438 4.4e-06 57.8 268 24.3
Duzib168G0422 Durio zibethinus HOM05D003006 ORTHO05D003438 5.7e-06 57.4 268 24.3
Eucgr.K01267 Eucalyptus grandis HOM05D002560 ORTHO05D003782 5.7e-06 57.4 154 26.6
Rhsim11G0125000 Rhododendron simsii HOM05D004134 ORTHO05D339485 5.7e-06 57.4 62 50.0
SGA_v2.0_scaffold476G52142 Striga asiatica HOM05D004134 ORTHO05D399067 5.7e-06 57.4 30 80.0
Nn8g39349 Nelumbo nucifera HOM05D003006 ORTHO05D003438 9.7e-06 56.6 268 24.6


User provided reference genes

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