Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold2726G54194 Striga asiatica HOM05D004777 ORTHO05D006240 1.1e-65 253.1 115 100.0
SGA_v2.0_scaffold18G08226 Striga asiatica HOM05D007685 ORTHO05D009136 1.6e-42 176.0 95 86.3
Haze_14664 Corylus avellana HOM05D004777 ORTHO05D006240 1.8e-20 102.8 57 77.2
Aqoxy3G01003 Aquilegia oxysepala HOM05D004777 ORTHO05D006240 6.7e-20 100.9 55 80.0
SalBow1G4936 Salvia bowleyana HOM05D004777 ORTHO05D006240 1.1e-19 100.1 54 81.5
MBI10_g11072_MAGBIO Magnolia biondii HOM05D004777 ORTHO05D006240 1.5e-19 99.8 57 75.4
Psat1g057880 Pisum sativum HOM05D004777 ORTHO05D006240 1.5e-19 99.8 76 59.2
CSS0014422 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 2.5e-19 99.0 54 79.6
CSS0014615 Camellia sinensis var. sinensis HOM05D004777 ORTHO05D006240 2.5e-19 99.0 54 79.6
Cpa.g.sc186.15 Carica papaya HOM05D004777 ORTHO05D006240 2.5e-19 99.0 54 79.6
QL02p076729 Quercus lobata HOM05D004777 ORTHO05D006240 2.5e-19 99.0 55 78.2
TWI56G1110 Tripterygium wilfordii HOM05D004777 ORTHO05D006240 2.5e-19 99.0 54 79.6
Rhsim08G0055400 Rhododendron simsii HOM05D004777 ORTHO05D006240 3.3e-19 98.6 54 79.6
TAR374G0088 Trochodendron aralioides HOM05D004777 ORTHO05D006240 4.3e-19 98.2 54 79.6
ClCG10G014260 Citrullus lanatus HOM05D004777 ORTHO05D006240 5.7e-19 97.8 55 78.2
MELO3C009952.2 Cucumis melo HOM05D004777 ORTHO05D006240 5.7e-19 97.8 55 78.2
CsaV3_3G042370 Cucumis sativus L. HOM05D004777 ORTHO05D006240 5.7e-19 97.8 55 78.2
Nitab4.5_0003337g0100 Nicotiana tabacum HOM05D004777 ORTHO05D006240 7.4e-19 97.4 54 77.8
Ciclev10015286m.g Citrus clementina HOM05D004777 ORTHO05D006240 9.7e-19 97.1 54 77.8
HanXRQChr17g0547881 Helianthus annuus HOM05D004777 ORTHO05D006240 9.7e-19 97.1 54 77.8
Lj7A591G73 Lonicera japonica HOM05D004777 ORTHO05D006240 9.7e-19 97.1 54 77.8
Solyc02g086910.4 Solanum lycopersicum HOM05D004777 ORTHO05D006240 9.7e-19 97.1 54 77.8
Sopen02g031680 Solanum pennellii HOM05D004777 ORTHO05D006240 9.7e-19 97.1 54 75.9
PGSC0003DMG401000527 Solanum tuberosum HOM05D004777 ORTHO05D006240 9.7e-19 97.1 54 77.8
SGA_v2.0_scaffold135G34858 Striga asiatica HOM05D004777 ORTHO05D006240 9.7e-19 97.1 54 77.8
Thhalv10020775m.g Eutrema salsugineum HOM05D004777 ORTHO05D006240 1.3e-18 96.7 54 74.1
Gohir.D09G025500 Gossypium hirsutum HOM05D004777 ORTHO05D006240 1.3e-18 96.7 54 77.8
Sp3g00590 Schrenkiella parvula HOM05D004777 ORTHO05D006240 1.3e-18 96.7 54 74.1
vmacro18239 Vaccinium macrocarpon HOM05D004777 ORTHO05D006240 1.3e-18 96.7 54 77.8
Eucgr.I01816 Eucalyptus grandis HOM05D004777 ORTHO05D006240 1.6e-18 96.3 54 75.9
Nitab4.5_0005176g0090 Nicotiana tabacum HOM05D004777 ORTHO05D006240 1.6e-18 96.3 54 75.9
GSVIVG01032488001 Vitis vinifera HOM05D004777 ORTHO05D006240 1.6e-18 96.3 54 77.8
MSTRG.3173 Avicennia marina HOM05D004777 ORTHO05D006240 2.2e-18 95.9 54 75.9
CANSAT64G2847 Cannabis sativa HOM05D004777 ORTHO05D006240 2.2e-18 95.9 54 75.9
CARHR075480 Cardamine hirsuta HOM05D004777 ORTHO05D006240 2.2e-18 95.9 54 72.2
Oeu043064.1 Olea europaea HOM05D004777 ORTHO05D006240 2.2e-18 95.9 54 75.9
Peaxi162Scf00129g01038 Petunia axillaris HOM05D004777 ORTHO05D006240 2.2e-18 95.9 54 75.9
Zm00001eb042520 Zea mays HOM05D004777 ORTHO05D006240 2.2e-18 95.9 55 72.7
Aa31LG5G10580 Aethionema arabicum HOM05D004777 ORTHO05D006240 2.8e-18 95.5 54 72.2
Carub.0003s0061 Capsella rubella HOM05D004777 ORTHO05D006240 2.8e-18 95.5 54 72.2
Gohir.A09G026100 Gossypium hirsutum HOM05D004777 ORTHO05D006240 2.8e-18 95.5 54 75.9
Gorai.006G029700 Gossypium raimondii HOM05D004777 ORTHO05D006240 2.8e-18 95.5 54 75.9
Lju41A35T60 Lonicera japonica HOM05D004777 ORTHO05D006240 2.8e-18 95.5 54 75.9
THA.LOC104802404 Tarenaya hassleriana HOM05D004777 ORTHO05D006240 2.8e-18 95.5 54 74.1
Migut.H00126 Erythranthe guttata HOM05D004777 ORTHO05D006240 3.7e-18 95.1 54 75.9
Glyma.19G009700 Glycine max HOM05D004777 ORTHO05D006240 3.7e-18 95.1 54 75.9
Potri.017G072800 Populus trichocarpa HOM05D004777 ORTHO05D006240 3.7e-18 95.1 55 72.7
Sed0004879 Sechium edule HOM05D004777 ORTHO05D006240 3.7e-18 95.1 55 74.5
HPP92_019963 Vanilla planifolia HOM05D004777 ORTHO05D006240 3.7e-18 95.1 54 75.9
Atru.BG.27.p Acer truncatum HOM05D004777 ORTHO05D006240 4.8e-18 94.7 54 75.9
A05p44530 Brassica napus HOM05D004777 ORTHO05D006240 6.3e-18 94.4 54 70.4
C09p75120 Brassica napus HOM05D004777 ORTHO05D006240 6.3e-18 94.4 54 70.4
BraA05t23204Z Brassica rapa HOM05D004777 ORTHO05D006240 6.3e-18 94.4 54 70.4
Ca_04203_v3 Cicer arietinum L. HOM05D004777 ORTHO05D006240 6.3e-18 94.4 55 72.7
Cc07_g02330 Coffea canephora HOM05D004777 ORTHO05D006240 6.3e-18 94.4 54 74.1
Glyma.13G169500 Glycine max HOM05D004777 ORTHO05D006240 6.3e-18 94.4 54 75.9
Lj2g0000040 Lotus japonicus HOM05D004777 ORTHO05D006240 6.3e-18 94.4 54 75.9
Actinidia16931 Actinidia chinensis HOM05D004777 ORTHO05D006240 8.2e-18 94.0 54 74.1
ATR0730G054 Amborella trichopoda HOM05D004777 ORTHO05D006240 8.2e-18 94.0 54 75.9
AL3G10690 Arabidopsis lyrata HOM05D004777 ORTHO05D006240 8.2e-18 94.0 54 70.4
AT3G01480 Arabidopsis thaliana HOM05D004777 ORTHO05D006240 8.2e-18 94.0 54 70.4
PGR142G2638 Punica granatum HOM05D004777 ORTHO05D006240 8.2e-18 94.0 54 74.1
Os08g0382400 Oryza sativa ssp. japonica HOM05D004777 ORTHO05D006240 1.1e-17 93.6 55 70.9
Hund02275 Selenicereus undatus HOM05D004777 ORTHO05D006240 1.1e-17 93.6 55 72.7
Ah.04g163480 Amaranthus hybridus HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
Dinv33499 Davidia involucrata HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
FvH4_6g50590 Fragaria vesca HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
FAN05G4199 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
FAN09G3008 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
FAN14G1693 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
FAN14G3936 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.4e-17 93.2 57 68.4
FAN14G5049 Fragaria x ananassa HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
Hma1.2p1_0802F.1_g220410 Hydrangea macrophylla HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
Potri.001G351400 Populus trichocarpa HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 75.9
Sc16g0005400 Simmondsia chinensis HOM05D004777 ORTHO05D006240 1.4e-17 93.2 54 74.1
Lsat_1_v5_gn_0_26221 Lactuca sativa HOM05D004777 ORTHO05D006240 1.8e-17 92.8 54 74.1
TAR622G1080 Trochodendron aralioides HOM05D004777 ORTHO05D006240 1.8e-17 92.8 54 75.9
COL.COLO4_28942 Corchorus olitorius HOM05D004777 ORTHO05D006240 2.4e-17 92.4 61 67.2
Duzib147G0776 Durio zibethinus HOM05D004777 ORTHO05D006240 2.4e-17 92.4 54 72.2
Lalb_Chr06g0176061 Lupinus albus HOM05D004777 ORTHO05D006240 2.4e-17 92.4 54 72.2
PSO478G4796 Papaver somniferum HOM05D004777 ORTHO05D006240 2.4e-17 92.4 54 74.1
Sabra17G0060200 Salix brachista HOM05D004777 ORTHO05D006240 2.4e-17 92.4 55 70.9
VMungo0464G0641 Vigna mungo HOM05D004777 ORTHO05D006240 2.4e-17 92.4 54 72.2
DCAR_011208 Daucus carota HOM05D004777 ORTHO05D006240 3.1e-17 92.0 54 72.2
Medtr6g007607 Medicago truncatula HOM05D004777 ORTHO05D006240 3.1e-17 92.0 54 70.4
Thecc.04G008400 Theobroma cacao HOM05D004777 ORTHO05D006240 3.1e-17 92.0 54 72.2
CAN.G206.34 Capsicum annuum HOM05D004777 ORTHO05D006240 4.1e-17 91.7 50 80.0
CDE02G3984 Ceratophyllum demersum HOM05D004777 ORTHO05D006240 4.1e-17 91.7 55 72.7
AUR62035505 Chenopodium quinoa HOM05D004777 ORTHO05D006240 4.1e-17 91.7 55 70.9
ECA246G3514 Erigeron canadensis HOM05D004777 ORTHO05D006240 4.1e-17 91.7 54 72.2
TPR.G2322 Trifolium pratense HOM05D004777 ORTHO05D006240 4.1e-17 91.7 54 68.5
Manes.15G183100 Manihot esculenta HOM05D004777 ORTHO05D006240 5.3e-17 91.3 54 72.2
Phvul.004G017000 Phaseolus vulgaris HOM05D004777 ORTHO05D006240 5.3e-17 91.3 54 70.4
unitig_21.g20495 Utricularia gibba HOM05D004777 ORTHO05D006240 5.3e-17 91.3 55 72.7
EL10Ac4g08570 Beta vulgaris HOM05D004777 ORTHO05D006240 6.9e-17 90.9 55 69.1
BolC5t35152H Brassica oleracea HOM05D004777 ORTHO05D006240 6.9e-17 90.9 54 68.5
MD09G1035000 Malus domestica HOM05D004777 ORTHO05D006240 6.9e-17 90.9 54 72.2
Prupe.3G283500 Prunus persica HOM05D004777 ORTHO05D006240 6.9e-17 90.9 54 72.2
CiPaw.03G037400 Carya illinoinensis HOM05D004777 ORTHO05D006240 1.2e-16 90.1 54 72.2
AUR62043215 Chenopodium quinoa HOM05D004777 ORTHO05D006240 1.2e-16 90.1 55 69.1
Lalb_Chr21g0319421 Lupinus albus HOM05D004777 ORTHO05D006240 1.2e-16 90.1 54 70.4
MD17G1035100 Malus domestica HOM05D004777 ORTHO05D006240 1.2e-16 90.1 54 70.4
Sabra16G0231000 Salix brachista HOM05D004777 ORTHO05D006240 1.5e-16 89.7 55 72.7
Gohir.A07G219400 Gossypium hirsutum HOM05D004777 ORTHO05D006240 2.0e-16 89.4 54 70.4
Gohir.D07G226300 Gossypium hirsutum HOM05D004777 ORTHO05D006240 2.0e-16 89.4 54 70.4
Gorai.001G261200 Gossypium raimondii HOM05D004777 ORTHO05D006240 2.0e-16 89.4 54 70.4
Nn4g22807 Nelumbo nucifera HOM05D004777 ORTHO05D006240 2.0e-16 89.4 54 72.2
PSO017G2091 Papaver somniferum HOM05D004777 ORTHO05D006240 2.6e-16 89.0 54 70.4
Duzib187G0683 Durio zibethinus HOM05D004777 ORTHO05D006240 3.4e-16 88.6 54 70.4
BcaC09g47657 Brassica carinata HOM05D004777 ORTHO05D006240 1.0e-15 87.0 50 70.0
RcHm_v2.0_Chr2g0171381 Rosa chinensis HOM05D004777 ORTHO05D006240 1.7e-15 86.3 50 74.0
arahy.Tifrunner.gnm1.ann1.8Y3CFZ Arachis hypogaea HOM05D004777 ORTHO05D006240 2.9e-15 85.5 51 70.6
arahy.Tifrunner.gnm1.ann1.8ZV6UW Arachis hypogaea HOM05D004777 ORTHO05D006240 2.9e-15 85.5 51 70.6
SEGI_33645 Sequoiadendron giganteum HOM05D004777 ORTHO05D006240 2.9e-15 85.5 55 67.3
BcaC04g20152 Brassica carinata HOM05D004777 ORTHO05D006240 3.8e-15 85.1 59 61.0
C09p47230 Brassica napus HOM05D004777 ORTHO05D006240 3.2e-14 82.0 54 64.8
SMO146G0026 Selaginella moellendorffii HOM05D004777 ORTHO05D006240 1.4e-12 76.6 80 46.2
Pp3c15_550 Physcomitrium patens HOM05D004777 ORTHO05D006240 1.1e-11 73.6 54 55.6
AagrBONN_evm.TU.Sc2ySwM_368.1753 Anthoceros agrestis HOM05D004777 ORTHO05D006240 2.5e-11 72.4 54 57.4
Pp3c9_660 Physcomitrium patens HOM05D004777 ORTHO05D006240 9.7e-11 70.5 55 52.7
Mapoly0001s0360 Marchantia polymorpha HOM05D004777 ORTHO05D006240 8.2e-10 67.4 54 53.7
CBR_g37206 Chara braunii HOM05D004777 ORTHO05D006240 1.1e-09 67.0 76 43.4
MCO01G434 Micromonas commoda HOM05D004777 ORTHO05D006240 5.3e-09 64.7 54 51.9
Pp3c26_630 Physcomitrium patens HOM05D004777 ORTHO05D006240 9.1e-09 63.9 54 50.0
HPP92_019953 Vanilla planifolia HOM05D004777 ORTHO05D006240 1.2e-08 63.5 35 77.1
A09p42090 Brassica napus HOM05D004777 ORTHO05D006240 3.2e-06 55.5 47 55.3


User provided reference genes

Program Settings