Gene: AT3G01480
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G01480
- Transcript Identifier AT3G01480.1
- Gene Type Coding gene
- Location Chr3 : 188569-190674 : positive
Gene Family Information
- ID HOM05D004777
- #Genes/#Species 154/98
- Phylogenetic origin
- ID ORTHO05D006240
- #Genes/#Species 145/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT3G01480.1
- symbol CYP38
- Alias ATCYP38,ARABIDOPSIS CYCLOPHILIN 38
- uniprot Q9SSA5
Descriptions
- Description cyclophilin 38
- Computational description cyclophilin 38 (CYP38); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, photosystem II assembly, photosystem II stabilization, defense response to bacterium; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G15520.1); Has 2157 Blast hits to 2154 proteins in 676 species: Archae - 40; Bacteria - 1435; Metazoa - 59; Fungi - 19; Plants - 86; Viruses - 0; Other Eukaryotes - 518 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042742 | IEP | GOA Database | defense response to bacterium | |
| GO:0000413 | IEA | Gene Ontology | protein peptidyl-prolyl isomerization | |
| GO:0000413 | IEA | InterPro | protein peptidyl-prolyl isomerization | |
| GO:0010102 | IMP | Gene Ontology | lateral root morphogenesis | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003755 | IEA | Gene Ontology | peptidyl-prolyl cis-trans isomerase activity | |
| GO:0003755 | IEA | InterPro | peptidyl-prolyl cis-trans isomerase activity | |
| GO:0016853 | IEA | GOA Database | isomerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009579 | IDA IEA | GOA Database | thylakoid | |
| GO:0009579 | HDA | Gene Ontology | thylakoid | 2 |
| GO:0009507 | IDA IEA | GOA Database | chloroplast | |
| GO:0009507 | HDA ISM | Gene Ontology | chloroplast | 3 |
| GO:0009536 | IEA | GOA Database | plastid | |
| GO:0009534 | IDA | GOA Database | chloroplast thylakoid | |
| GO:0009534 | HDA | Gene Ontology | chloroplast thylakoid | 4 |
| GO:0009535 | IDA | GOA Database | chloroplast thylakoid membrane | |
| GO:0009535 | HDA | Gene Ontology | chloroplast thylakoid membrane | 5 |
| GO:0031977 | IDA | GOA Database | thylakoid lumen | |
| GO:0031977 | HDA | Gene Ontology | thylakoid lumen | 6 |
| GO:0009570 | IDA | GOA Database | chloroplast stroma | |
| GO:0009570 | HDA | Gene Ontology | chloroplast stroma | 7 |
| GO:0009543 | IEA | GOA Database | chloroplast thylakoid lumen | |
| GO:0009543 | HDA | Gene Ontology | chloroplast thylakoid lumen | 6 |
| GO:0005829 | HDA | Gene Ontology | cytosol | 8 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |