Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold24G10294 Striga asiatica HOM05D005073 ORTHO05D006166 1.3e-296 1022.3 526 100.0
SGA_v2.0_scaffold48G18021 Striga asiatica HOM05D005073 ORTHO05D006166 1.1e-237 826.6 568 77.8
SalBow7G0210 Salvia bowleyana HOM05D005073 ORTHO05D006166 3.2e-202 708.8 558 69.5
Oeu024557.1 Olea europaea HOM05D005073 ORTHO05D006166 4.6e-201 704.9 560 69.6
Migut.C00179 Erythranthe guttata HOM05D005073 ORTHO05D006166 3.9e-200 701.8 561 69.0
Nitab4.5_0000469g0190 Nicotiana tabacum HOM05D005073 ORTHO05D006166 2.2e-182 642.9 557 63.4
Nitab4.5_0009824g0010 Nicotiana tabacum HOM05D005073 ORTHO05D006166 3.7e-182 642.1 556 62.8
Sopen04g028940 Solanum pennellii HOM05D005073 ORTHO05D006166 1.1e-181 640.6 562 62.6
Actinidia30750 Actinidia chinensis HOM05D005073 ORTHO05D006166 3.1e-181 639.0 531 65.3
PGSC0003DMG400009470 Solanum tuberosum HOM05D005073 ORTHO05D006166 3.5e-180 635.6 563 62.9
TAR381G0980 Trochodendron aralioides HOM05D005073 ORTHO05D006166 1.7e-179 633.3 558 63.8
Cc10_g05860 Coffea canephora HOM05D005073 ORTHO05D006166 1.1e-178 630.6 566 62.5
Hma1.2p1_0120F.1_g057030 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 2.5e-178 629.4 489 67.5
GSVIVG01008990001 Vitis vinifera HOM05D005073 ORTHO05D006166 2.5e-178 629.4 565 62.5
Peaxi162Scf00310g00019 Petunia axillaris HOM05D005073 ORTHO05D006166 5.5e-178 628.2 492 68.7
CSS0000538 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 8.0e-177 624.4 487 68.8
Cpa.g.sc66.92 Carica papaya HOM05D005073 ORTHO05D006166 4.0e-176 622.1 557 61.9
CiPaw.05G232900 Carya illinoinensis HOM05D005073 ORTHO05D006166 4.0e-176 622.1 545 64.2
CSS0031049 Camellia sinensis var. sinensis HOM05D005073 ORTHO05D006166 6.7e-176 621.3 487 68.6
Ciclev10003846m.g Citrus clementina HOM05D005073 ORTHO05D006166 6.7e-176 621.3 559 61.5
Glyma.06G106000 Glycine max HOM05D005073 ORTHO05D006166 6.3e-174 614.8 533 64.2
Duzib041G0650 Durio zibethinus HOM05D005073 ORTHO05D006166 1.8e-173 613.2 560 62.0
Nn1g05274 Nelumbo nucifera HOM05D005073 ORTHO05D006166 4.1e-173 612.1 558 61.6
Eucgr.F02969 Eucalyptus grandis HOM05D005073 ORTHO05D006166 1.6e-172 610.1 564 59.4
VMungo1309G2662 Vigna mungo HOM05D005073 ORTHO05D006166 3.5e-172 609.0 510 65.1
Potri.002G092600 Populus trichocarpa HOM05D005073 ORTHO05D006166 1.3e-171 607.1 505 65.7
Sabra02G0073100 Salix brachista HOM05D005073 ORTHO05D006166 1.3e-171 607.1 489 66.5
arahy.Tifrunner.gnm1.ann1.T10PLA Arachis hypogaea HOM05D005073 ORTHO05D006166 1.7e-171 606.7 563 60.9
Thecc.08G112000 Theobroma cacao HOM05D005073 ORTHO05D006166 2.2e-171 606.3 565 60.4
Gorai.009G239900 Gossypium raimondii HOM05D005073 ORTHO05D006166 3.8e-171 605.5 568 60.0
RcHm_v2.0_Chr7g0239951 Rosa chinensis HOM05D005073 ORTHO05D006166 3.8e-171 605.5 567 59.3
Lalb_Chr23g0270691 Lupinus albus HOM05D005073 ORTHO05D006166 5.0e-171 605.1 489 66.3
ECA246G0226 Erigeron canadensis HOM05D005073 ORTHO05D006166 1.1e-170 604.0 543 60.4
Prupe.1G511900 Prunus persica HOM05D005073 ORTHO05D006166 1.5e-170 603.6 528 62.7
Gohir.A05G229400 Gossypium hirsutum HOM05D005073 ORTHO05D006166 1.9e-170 603.2 568 59.9
HanXRQChr10g0278501 Helianthus annuus HOM05D005073 ORTHO05D006166 1.9e-170 603.2 516 62.0
FAN04G2698 Fragaria x ananassa HOM05D005073 ORTHO05D006166 9.4e-170 600.9 566 59.2
FAN13G1954 Fragaria x ananassa HOM05D005073 ORTHO05D006166 9.4e-170 600.9 566 59.4
FvH4_5g38010 Fragaria vesca HOM05D005073 ORTHO05D006166 1.2e-169 600.5 565 59.5
Lj1g0017290 Lotus japonicus HOM05D005073 ORTHO05D006166 1.2e-169 600.5 494 66.0
TPR.G34614 Trifolium pratense HOM05D005073 ORTHO05D006166 4.7e-169 598.6 521 63.1
Psat5g137200 Pisum sativum HOM05D005073 ORTHO05D006166 1.2e-167 594.0 493 64.5
CANSAT54G2794 Cannabis sativa HOM05D005073 ORTHO05D006166 1.5e-167 593.6 466 68.7
CsaV3_5G023620 Cucumis sativus L. HOM05D005073 ORTHO05D006166 3.4e-167 592.4 557 60.0
COL.COLO4_16466 Corchorus olitorius HOM05D005073 ORTHO05D006166 9.8e-167 590.9 564 58.7
unitig_0.g2069 Utricularia gibba HOM05D005073 ORTHO05D006166 9.8e-167 590.9 466 67.2
FAN08G1532 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.7e-166 590.1 577 58.1
MD08G1177300 Malus domestica HOM05D005073 ORTHO05D006166 2.2e-166 589.7 554 58.8
FAN18G0258 Fragaria x ananassa HOM05D005073 ORTHO05D006166 1.4e-165 587.0 593 57.2
MELO3C022795.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.8e-165 586.6 557 60.0
Manes.18G070400 Manihot esculenta HOM05D005073 ORTHO05D006166 4.1e-165 585.5 469 66.1
Sed0012840 Sechium edule HOM05D005073 ORTHO05D006166 4.1e-165 585.5 560 60.2
ClCG03G008990 Citrullus lanatus HOM05D005073 ORTHO05D006166 9.1e-165 584.3 551 59.9
Aqoxy1G01853 Aquilegia oxysepala HOM05D005073 ORTHO05D006166 1.6e-164 583.6 487 64.3
Ca_15226_v3 Cicer arietinum L. HOM05D005073 ORTHO05D006166 1.6e-164 583.6 491 64.0
arahy.Tifrunner.gnm1.ann1.K8DV01 Arachis hypogaea HOM05D005073 ORTHO05D006166 5.9e-164 581.6 572 58.7
Lj4C715T1 Lonicera japonica HOM05D005073 ORTHO05D006166 1.1e-162 577.4 555 58.4
PSO447G0212 Papaver somniferum HOM05D005073 ORTHO05D006166 1.9e-162 576.6 547 59.2
Medtr3g073790 Medicago truncatula HOM05D005073 ORTHO05D006166 4.2e-162 575.5 463 66.5
PSO210G7769 Papaver somniferum HOM05D005073 ORTHO05D006166 5.5e-162 575.1 493 62.5
A07p43250 Brassica napus HOM05D005073 ORTHO05D006166 2.1e-161 573.2 569 57.8
Atru.BG.242.p Acer truncatum HOM05D005073 ORTHO05D006166 8.0e-161 571.2 464 66.6
THA.LOC104810083 Tarenaya hassleriana HOM05D005073 ORTHO05D006166 3.0e-160 569.3 566 57.8
Aa31LG4G8070 Aethionema arabicum HOM05D005073 ORTHO05D006166 8.8e-160 567.8 569 57.5
CDE03G0055 Ceratophyllum demersum HOM05D005073 ORTHO05D006166 2.6e-159 566.2 490 62.9
AL2G38280 Arabidopsis lyrata HOM05D005073 ORTHO05D006166 7.5e-159 564.7 574 56.3
AT1G78010 Arabidopsis thaliana HOM05D005073 ORTHO05D006166 7.5e-159 564.7 572 56.3
PGR044G0799 Punica granatum HOM05D005073 ORTHO05D006166 9.8e-159 564.3 530 60.8
C06p51930 Brassica napus HOM05D005073 ORTHO05D006166 1.3e-158 563.9 568 57.2
Hund26651 Selenicereus undatus HOM05D005073 ORTHO05D006166 1.7e-158 563.5 615 55.0
Sp5g33150 Schrenkiella parvula HOM05D005073 ORTHO05D006166 8.3e-158 561.2 574 56.1
Thhalv10018349m.g Eutrema salsugineum HOM05D005073 ORTHO05D006166 1.2e-156 557.4 574 55.7
ATR0564G350 Amborella trichopoda HOM05D005073 ORTHO05D006166 4.5e-156 555.4 490 60.6
Lsat_1_v5_gn_6_102120 Lactuca sativa HOM05D005073 ORTHO05D006166 5.0e-155 552.0 545 55.8
Os08g0407000 Oryza sativa ssp. japonica HOM05D005073 ORTHO05D006166 5.0e-155 552.0 462 63.2
AUR62022347 Chenopodium quinoa HOM05D005073 ORTHO05D006166 8.6e-155 551.2 562 58.0
EL10Ac1g01681 Beta vulgaris HOM05D005073 ORTHO05D006166 1.5e-154 550.4 571 56.2
AUR62034358 Chenopodium quinoa HOM05D005073 ORTHO05D006166 3.3e-154 549.3 556 58.3
DCAR_008707 Daucus carota HOM05D005073 ORTHO05D006166 2.8e-153 546.2 490 60.0
HPP92_016434 Vanilla planifolia HOM05D005073 ORTHO05D006166 7.5e-151 538.1 484 57.0
HPP92_016476 Vanilla planifolia HOM05D005073 ORTHO05D006166 2.2e-150 536.6 485 57.5
Zm00001eb178820 Zea mays HOM05D005073 ORTHO05D006166 9.2e-149 531.2 450 62.4
BraA07t31846Z Brassica rapa HOM05D005073 ORTHO05D006166 4.6e-148 528.9 566 54.8
Haze_00571 Corylus avellana HOM05D005073 ORTHO05D006166 3.3e-146 522.7 435 66.0
BolC6t40215H Brassica oleracea HOM05D005073 ORTHO05D006166 2.1e-145 520.0 569 54.0
SEGI_22824 Sequoiadendron giganteum HOM05D005073 ORTHO05D006166 3.1e-144 516.2 466 59.0
BcaC08g47633 Brassica carinata HOM05D005073 ORTHO05D006166 4.6e-132 475.7 570 50.4
Gohir.D05G231700 Gossypium hirsutum HOM05D005073 ORTHO05D006166 1.3e-131 474.2 491 56.8
MBI02_g30882_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 1.3e-126 457.6 491 54.2
Pp3c13_12510 Physcomitrium patens HOM05D005073 ORTHO05D006166 1.4e-125 454.1 554 47.7
Pp3c13_12516 Physcomitrium patens HOM05D005073 ORTHO05D006166 1.4e-125 454.1 554 47.7
AagrBONN_evm.TU.Sc2ySwM_228.2622 Anthoceros agrestis HOM05D005073 ORTHO05D006166 3.9e-123 446.0 485 50.9
Dinv44743 Davidia involucrata HOM05D005073 ORTHO05D006166 9.6e-122 441.4 345 69.3
Glyma.04G105000 Glycine max HOM05D005073 ORTHO05D006166 6.2e-121 438.7 363 67.2
QL12p035942 Quercus lobata HOM05D005073 ORTHO05D006166 1.4e-120 437.6 347 68.0
CBR_g9146 Chara braunii HOM05D005073 ORTHO05D006166 5.8e-119 432.2 524 47.3
CAN.G517.17 Capsicum annuum HOM05D005073 ORTHO05D006166 1.9e-114 417.2 274 78.1
Atru.chr13.1265 Acer truncatum HOM05D005073 ORTHO05D006166 1.3e-113 414.5 345 66.1
SMO137G0212 Selaginella moellendorffii HOM05D005073 ORTHO05D006166 5.8e-111 405.6 477 47.6
Phvul.009G028601 Phaseolus vulgaris HOM05D005073 ORTHO05D006166 2.9e-110 403.3 272 77.6
Carub.0002s2490 Capsella rubella HOM05D005073 ORTHO05D006166 7.1e-109 398.7 346 63.9
CARHR071470 Cardamine hirsuta HOM05D005073 ORTHO05D006166 1.7e-107 394.0 350 62.0
Rhsim06G0085400 Rhododendron simsii HOM05D005073 ORTHO05D006166 7.6e-103 378.6 376 56.4
Cre16.g681238 Chlamydomonas reinhardtii HOM05D005073 ORTHO05D006166 1.3e-99 367.9 480 44.4
vmacro21228 Vaccinium macrocarpon HOM05D005073 ORTHO05D006166 1.8e-99 367.5 431 51.7
Hma1.2p1_0120F.1_g057040 Hydrangea macrophylla HOM05D005073 ORTHO05D006166 4.9e-94 349.4 298 61.7
Ah.16g109530 Amaranthus hybridus HOM05D005073 ORTHO05D006166 2.8e-89 333.6 357 56.6
Mapoly0034s0014 Marchantia polymorpha HOM05D005073 ORTHO05D006166 6.3e-89 332.4 245 69.4
Sc12g0004230 Simmondsia chinensis HOM05D005073 ORTHO05D006166 1.4e-88 331.3 238 71.8
PRCOL_00000127 Prasinoderma coloniale HOM05D005073 ORTHO05D006166 2.5e-85 320.5 504 38.3
MD15G1355000 Malus domestica HOM05D005073 ORTHO05D006166 4.2e-85 319.7 297 57.6
MCO14G420 Micromonas commoda HOM05D005073 ORTHO05D006166 1.9e-82 310.8 561 36.9
Sc12g0004220 Simmondsia chinensis HOM05D005073 ORTHO05D006166 3.5e-55 220.3 174 63.8
Ah.16g109540 Amaranthus hybridus HOM05D005073 ORTHO05D006166 1.5e-50 204.9 171 60.8
QL12p035939 Quercus lobata HOM05D005073 ORTHO05D006166 4.5e-47 193.4 152 64.5
Actinidia10299 Actinidia chinensis HOM05D005073 ORTHO05D006166 2.0e-42 177.9 332 40.7
MELO3C027311.2 Cucumis melo HOM05D005073 ORTHO05D006166 1.1e-37 162.2 157 52.9
Mapoly0034s0013 Marchantia polymorpha HOM05D005073 ORTHO05D006166 4.6e-31 140.2 172 44.2
C09p47800 Brassica napus HOM05D005073 ORTHO05D006166 5.6e-29 133.3 171 48.5
A09p41080 Brassica napus HOM05D005073 ORTHO05D006166 1.0e-27 129.0 142 52.1
A03p65370 Brassica napus HOM05D005073 ORTHO05D006166 5.2e-27 126.7 171 47.4
BraA03t15591Z Brassica rapa HOM05D005073 ORTHO05D006166 5.2e-27 126.7 171 47.4
BcaC07g39279 Brassica carinata HOM05D005073 ORTHO05D006166 2.6e-26 124.4 153 49.0
C08p22880 Brassica napus HOM05D005073 ORTHO05D006166 2.6e-26 124.4 178 45.5
BolC8t49924H Brassica oleracea HOM05D005073 ORTHO05D006166 2.6e-26 124.4 178 45.5
C05p36400 Brassica napus HOM05D005073 ORTHO05D006166 4.4e-26 123.6 174 46.0
BcaC05g27652 Brassica carinata HOM05D005073 ORTHO05D006166 8.3e-25 119.4 176 44.3
Cfa027202 Carpinus fangiana HOM05D005073 ORTHO05D006166 2.7e-23 114.4 260 33.5
BcaC06g36777 Brassica carinata HOM05D005073 ORTHO05D006166 4.6e-23 113.6 175 43.4
BolC7t40457H Brassica oleracea HOM05D005073 ORTHO05D006166 4.6e-23 113.6 175 44.0
Duzib093G1393 Durio zibethinus HOM05D005073 ORTHO05D006166 7.8e-23 112.8 167 45.5
BolC7t40456H Brassica oleracea HOM05D005073 ORTHO05D006166 4.3e-21 107.1 171 44.4
MELO3C027298.2 Cucumis melo HOM05D005073 ORTHO05D006166 6.4e-17 93.2 100 52.0
BraA09t39601Z Brassica rapa HOM05D005073 ORTHO05D006166 9.2e-16 89.4 112 50.0
A04p08580 Brassica napus HOM05D005073 ORTHO05D006166 6.0e-15 86.7 112 49.1
BraA04t16552Z Brassica rapa HOM05D005073 ORTHO05D006166 6.0e-15 86.7 112 49.1
MELO3C033719.2 Cucumis melo HOM05D005073 ORTHO05D006166 3.5e-07 60.8 42 66.7
MBI18_g42472_MAGBIO Magnolia biondii HOM05D005073 ORTHO05D006166 4.6e-07 60.5 41 82.9
C07p00040 Brassica napus HOM05D005073 ORTHO05D006166 3.0e-06 57.8 43 55.8
C07p00050 Brassica napus HOM05D005073 ORTHO05D006166 3.0e-06 57.8 43 55.8


User provided reference genes

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