Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1855.9 959 100.0
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1572.0 957 85.3
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1534.6 933 84.8
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 0.0e+00 1461.4 970 79.4
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1452.2 968 79.9
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1426.0 929 80.0
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1425.2 937 79.5
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1414.1 948 78.4
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1414.1 947 78.7
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1401.3 942 77.8
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1399.0 839 84.9
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1398.3 896 80.6
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1388.6 953 76.1
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1387.1 941 77.0
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1372.8 950 75.5
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1372.8 954 75.2
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1369.8 1021 72.1
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1368.2 1049 71.7
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1367.8 944 76.1
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1367.4 946 75.4
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1367.4 943 75.7
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1365.1 936 76.0
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1364.0 897 78.3
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1362.4 898 78.1
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1361.7 894 78.6
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1361.3 926 76.9
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1360.5 951 74.3
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1357.4 931 76.2
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1357.4 936 75.6
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1356.7 930 75.7
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1354.7 935 75.8
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1354.3 942 75.3
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1351.7 936 75.5
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1350.9 895 77.3
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1350.1 940 75.2
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 0.0e+00 1347.4 962 74.6
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1347.4 936 74.9
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1345.9 945 74.2
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1345.5 872 79.2
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1345.1 958 74.7
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1343.9 895 77.1
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1343.6 937 74.7
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1341.6 942 76.1
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1341.3 953 74.1
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1338.2 914 76.6
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1337.4 941 73.4
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1335.1 831 80.6
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1334.7 932 74.1
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1333.2 939 73.7
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1331.2 901 76.4
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1328.5 936 73.6
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1326.2 937 74.3
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1324.3 884 77.5
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 0.0e+00 1321.2 942 72.7
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1319.7 938 74.0
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1318.1 895 75.9
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1316.6 892 77.0
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1305.4 947 72.9
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1302.7 881 74.9
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1301.2 889 74.8
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1300.0 894 75.6
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1298.5 971 71.4
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1292.7 879 75.1
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1291.2 879 74.9
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1288.5 879 74.4
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1287.7 941 71.9
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1286.9 928 73.4
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1286.6 940 71.7
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1285.0 867 74.7
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1285.0 912 72.7
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 0.0e+00 1282.7 953 69.8
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1280.0 948 71.9
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1271.5 846 76.1
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1270.4 843 77.5
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1269.2 943 70.1
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1266.9 850 76.0
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1266.9 854 75.5
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1266.5 1073 64.8
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 0.0e+00 1254.6 840 74.5
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 0.0e+00 1251.5 878 73.6
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 0.0e+00 1205.7 816 77.0
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 0.0e+00 1200.7 876 68.8
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1198.3 1006 65.5
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1189.1 716 82.8
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 0.0e+00 1130.9 718 79.9
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 0.0e+00 1130.2 734 78.9
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 0.0e+00 1124.0 726 78.5
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 5.1e-307 1057.7 858 62.7
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 1.8e-304 1049.3 902 59.2
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 3.8e-294 1015.0 869 59.0
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 3.1e-259 899.0 851 53.0
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 3.5e-247 859.0 604 72.5
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 2.3e-246 856.3 584 74.7
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 2.6e-242 842.8 600 73.3
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 2.0e-218 763.5 552 73.7
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 4.5e-218 762.3 1084 45.1
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 9.0e-211 738.0 495 73.5
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 1.7e-201 707.2 856 45.3
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 4.6e-199 699.1 547 68.7
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 6.1e-199 698.7 543 63.0
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 1.5e-197 694.1 499 72.1
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 2.2e-188 663.7 471 73.0
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 1.4e-187 661.0 846 43.1
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 9.1e-179 631.7 457 72.4
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 2.6e-178 630.2 436 73.9
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 4.0e-166 589.7 400 77.0
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.5e-165 587.8 340 83.8
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 9.4e-160 568.5 421 68.6
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 5.4e-131 473.0 709 40.5
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 5.8e-117 426.4 289 76.5
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 4.6e-114 416.8 339 67.6
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 1.4e-99 368.6 308 68.5
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 4.8e-95 353.6 262 63.0
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 1.4e-86 325.5 313 60.1
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 2.5e-83 314.7 312 51.3
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 1.5e-72 278.9 169 79.9
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 3.7e-71 274.2 218 67.4
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 5.5e-67 260.4 209 62.7
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 3.9e-65 254.2 155 81.9
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 2.0e-64 251.9 187 68.4
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 1.3e-63 249.2 192 70.8
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 1.1e-54 219.5 109 93.6
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 5.9e-53 213.8 260 47.7
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 1.4e-49 202.6 122 78.7
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 5.2e-49 200.7 120 80.8
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 1.9e-43 182.2 120 73.3
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 3.0e-41 174.9 96 86.5
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 3.3e-35 154.8 115 70.4
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.1e-34 152.1 115 68.7
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 3.0e-28 131.7 119 58.0
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 5.6e-27 127.5 76 84.2
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 3.7e-23 114.8 114 57.0
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 4.9e-23 114.4 87 62.1
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 2.3e-20 105.5 76 69.7
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 3.0e-20 105.1 101 55.4
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 2.1e-18 99.0 81 65.4
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 2.8e-18 98.6 157 44.6
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 4.7e-18 97.8 86 54.7
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 1.4e-17 96.3 96 63.5
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 1.2e-16 93.2 43 97.7
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 3.4e-16 91.7 55 81.8
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 1.3e-15 89.7 115 44.3
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.1e-14 86.7 439 24.1
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.4e-14 86.3 453 23.2
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 5.4e-14 84.3 138 44.9
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 7.1e-14 84.0 437 23.1
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 7.8e-13 80.5 379 25.1
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 7.8e-13 80.5 46 82.6
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 8.6e-12 77.0 396 23.7
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 7.3e-11 73.9 380 23.2
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 7.3e-11 73.9 353 23.2
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 7.3e-11 73.9 60 61.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 9.5e-11 73.6 169 32.0
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 9.5e-11 73.6 378 23.0
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 9.5e-11 73.6 167 28.7
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.1e-10 72.4 353 22.9
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 6.2e-10 70.9 222 24.8
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.1e-09 70.1 198 27.8
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 2.4e-09 68.9 199 27.1
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 4.0e-09 68.2 199 25.6
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 4.0e-09 68.2 378 23.3
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 8.9e-09 67.0 218 25.2
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.2e-08 66.6 87 44.8
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.5e-08 66.2 377 23.3
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.6e-08 65.5 377 23.3
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 3.4e-08 65.1 284 24.6
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 5.8e-08 64.3 200 27.0
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 5.8e-08 64.3 51 66.7
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 2.9e-07 62.0 218 26.6
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 4.9e-07 61.2 85 44.7
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 4.9e-07 61.2 376 21.5


User provided reference genes

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