Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2883.6 1490 100.0
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2505.7 1491 86.0
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2496.1 1532 83.9
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2480.3 1494 85.2
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2342.8 1497 79.8
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2312.3 1491 79.5
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2305.0 1495 79.3
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2300.8 1493 78.6
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2297.3 1494 78.6
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2294.6 1494 77.8
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2279.6 1477 79.1
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2275.7 1492 77.0
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2275.0 1489 77.9
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2269.2 1495 77.3
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2267.7 1495 77.3
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2264.6 1488 77.7
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2263.4 1494 77.9
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2261.5 1488 77.5
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2261.1 1493 77.1
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2251.5 1495 77.2
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2250.7 1489 76.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2247.2 1492 76.7
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2246.1 1494 76.3
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2235.7 1546 74.7
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2234.5 1494 75.4
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2231.4 1493 76.4
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2212.2 1495 74.6
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2211.8 1496 74.8
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2210.3 1488 76.0
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2206.4 1494 76.3
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2203.7 1497 74.3
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2202.2 1488 75.5
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2201.0 1497 74.5
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2195.2 1493 75.3
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2193.7 1563 73.2
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2192.9 1494 74.6
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2181.4 1492 74.2
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2180.6 1495 74.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2174.4 1531 72.6
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2171.0 1490 73.6
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2171.0 1493 74.7
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2170.2 1490 73.7
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2163.7 1490 73.6
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2163.7 1491 74.2
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2158.6 1446 76.6
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2158.3 1491 73.8
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2155.6 1494 73.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2155.2 1495 74.0
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2155.2 1492 73.5
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2154.8 1496 74.0
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2152.9 1485 73.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2151.7 1494 73.4
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2149.4 1487 73.5
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2148.6 1487 73.8
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2147.9 1495 72.6
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2145.9 1492 73.5
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2139.0 1485 73.0
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2125.1 1483 73.5
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2109.3 1490 72.6
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2102.4 1494 72.0
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2095.5 1495 71.8
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2080.1 1478 72.2
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2074.3 1490 71.5
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2069.3 1488 71.0
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2063.5 1495 71.8
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2061.6 1495 70.8
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2058.5 1491 71.4
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1490 70.9
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2052.7 1494 70.2
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2051.6 1492 70.4
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2050.8 1497 70.3
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2049.2 1492 71.4
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2038.5 1492 70.5
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2033.1 1494 70.4
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2031.5 1494 70.5
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2031.5 1548 68.5
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2030.4 1504 70.3
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2026.5 1488 70.2
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2025.8 1304 79.8
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2025.0 1504 69.9
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2021.1 1493 70.2
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 2020.7 1488 69.8
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2019.6 1504 70.0
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2017.7 1504 69.9
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2016.9 1491 69.8
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2016.5 1501 70.0
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2016.1 1503 69.8
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2016.1 1490 69.7
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2015.7 1500 70.0
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1989.5 1483 69.0
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1981.5 1276 78.8
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1956.0 1458 69.6
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 1945.6 1303 77.1
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1940.6 1577 65.1
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1909.0 1306 75.7
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1908.3 1306 75.8
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1903.6 1504 66.7
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1887.5 1588 65.2
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1867.8 1482 65.3
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1862.8 1439 68.7
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1850.1 1393 71.2
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1827.4 1493 64.1
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1826.6 1222 77.3
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1794.2 1436 66.6
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1784.2 1377 68.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1724.5 1460 61.7
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1603.6 1523 56.8
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1592.4 1524 56.4
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1566.6 985 80.1
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1537.3 1417 61.3
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1438.3 1371 59.2
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1387.1 1087 66.7
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1376.7 1371 57.6
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1369.0 1220 59.6
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1341.3 1300 55.4
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1171.8 1278 54.3
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1116.7 735 77.8
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 5.0e-301 1038.5 744 71.0
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.7e-296 1023.5 849 63.6
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 4.1e-271 939.1 707 70.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 4.7e-267 925.6 777 65.0
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 2.8e-259 899.8 923 57.6
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.8e-232 809.7 590 69.0
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 9.7e-220 768.5 614 67.3
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 9.4e-199 698.7 601 61.1
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 8.0e-190 669.1 889 45.1
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.4e-181 641.7 355 85.6
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 1.3e-168 598.6 745 47.8
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 3.0e-168 597.4 438 73.1
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 2.4e-154 551.2 480 63.3
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.0e-152 545.8 476 62.0
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 8.7e-136 489.6 569 50.3
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.0e-112 412.9 773 37.1
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 3.7e-102 377.9 1766 25.8
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 6.9e-101 373.6 1595 27.1
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 6.3e-94 350.5 445 47.0
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 5.0e-91 340.9 1625 25.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 5.0e-91 340.9 214 81.3
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 7.0e-85 320.5 335 54.3
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.8e-78 298.5 225 68.0
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 3.8e-75 288.1 241 63.5
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.0e-72 278.1 231 63.2
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 1.1e-69 270.0 149 82.6
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 1.1e-69 270.0 152 78.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.5e-66 259.6 273 54.2
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 4.2e-66 258.1 195 66.7
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 1.0e-51 210.3 102 97.1
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 1.9e-42 179.5 1340 22.2
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 7.3e-42 177.6 190 53.7
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 6.2e-41 174.5 189 52.4
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 8.3e-38 164.1 218 50.0
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.4e-37 163.3 159 55.3
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 1.8e-32 146.4 130 56.9
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 4.4e-31 141.7 343 34.4
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 5.8e-31 141.4 131 58.0
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 6.0e-28 131.3 107 64.5
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.3e-27 130.2 102 64.7
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.3e-27 129.4 101 68.3
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 3.1e-24 119.0 55 94.5
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.2e-22 112.8 67 76.1
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 6.4e-22 111.3 64 78.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 4.0e-16 92.0 70 64.3
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 6.9e-16 91.3 152 40.8
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.6e-15 89.4 50 82.0
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 2.6e-15 89.4 50 82.0
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 6.7e-11 74.7 465 23.9
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.8e-09 69.3 64 64.1
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 3.7e-09 68.9 34 88.2
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 6.2e-09 68.2 54 63.0
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 9.9e-07 60.8 36 83.3


User provided reference genes

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