Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.6e-132 476.1 240 100.0
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.5e-117 426.4 254 86.2
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 1.5e-117 426.4 254 86.2
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.9e-117 426.0 253 85.0
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 5.5e-117 424.5 253 84.6
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 3.6e-116 421.8 253 84.6
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.8e-115 419.5 253 83.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 8.8e-115 417.2 253 83.0
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 1.2e-114 416.8 253 82.2
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 3.3e-114 415.2 253 82.2
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 3.3e-114 415.2 251 84.1
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 4.4e-114 414.8 253 82.2
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 5.7e-114 414.5 253 82.2
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.5e-114 414.1 253 82.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 7.5e-114 414.1 253 82.6
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 9.7e-114 413.7 253 81.8
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 1.7e-113 412.9 253 82.2
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 1.7e-113 412.9 253 82.2
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 1.7e-113 412.9 253 82.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 2.2e-113 412.5 253 81.8
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 3.7e-113 411.8 259 79.5
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 3.7e-113 411.8 253 80.6
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 3.7e-113 411.8 253 81.0
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 4.8e-113 411.4 252 81.3
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 6.3e-113 411.0 253 81.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 6.3e-113 411.0 253 80.6
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 1.1e-112 410.2 253 80.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.4e-112 409.8 244 82.0
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 1.8e-112 409.5 253 81.4
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 2.4e-112 409.1 253 80.6
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.4e-112 409.1 253 81.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 2.4e-112 409.1 253 81.4
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 3.1e-112 408.7 253 81.4
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 4.1e-112 408.3 253 80.6
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 4.1e-112 408.3 253 81.0
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 4.1e-112 408.3 253 80.6
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.3e-112 407.9 253 79.4
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 5.3e-112 407.9 253 79.8
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 7.0e-112 407.5 253 80.6
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-111 406.8 254 79.9
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.2e-111 406.8 253 79.4
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.6e-111 406.4 253 80.6
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 1.6e-111 406.4 253 80.2
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 1.6e-111 406.4 253 81.0
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.0e-111 406.0 252 81.0
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.7e-111 405.6 253 80.6
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 4.5e-111 404.8 253 80.6
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 4.5e-111 404.8 253 79.4
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 5.9e-111 404.4 253 79.8
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 7.7e-111 404.1 253 80.2
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.0e-110 403.7 252 80.6
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.0e-110 403.7 253 79.8
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 1.3e-110 403.3 253 80.6
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 1.3e-110 403.3 253 79.4
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 1.3e-110 403.3 253 80.6
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 2.2e-110 402.5 253 79.8
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.2e-110 402.5 253 79.1
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.2e-110 402.5 253 79.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 3.8e-110 401.7 253 79.1
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 6.5e-110 401.0 245 80.8
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 6.5e-110 401.0 253 79.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 6.5e-110 401.0 253 80.2
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 8.5e-110 400.6 253 79.1
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 8.5e-110 400.6 254 79.9
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.9e-109 399.4 253 79.4
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 2.5e-109 399.1 253 79.8
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 3.2e-109 398.7 253 79.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 5.5e-109 397.9 253 77.5
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 5.5e-109 397.9 253 79.1
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 7.2e-109 397.5 279 72.8
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 9.4e-109 397.1 253 79.4
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 1.2e-108 396.7 252 79.0
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 1.6e-108 396.4 253 78.3
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 1.6e-108 396.4 253 78.3
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.6e-108 396.4 253 78.7
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 2.1e-108 396.0 253 77.5
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.7e-108 395.6 249 79.5
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 3.6e-108 395.2 253 79.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 4.7e-108 394.8 253 76.7
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 4.7e-108 394.8 253 77.9
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 6.1e-108 394.4 253 76.3
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 1.0e-107 393.7 253 76.3
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 1.0e-107 393.7 253 76.3
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 1.0e-107 393.7 253 76.3
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 1.0e-107 393.7 253 76.3
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 1.0e-107 393.7 242 81.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 1.0e-107 393.7 253 75.9
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.8e-107 392.9 253 78.3
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 1.8e-107 392.9 255 76.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 4.0e-107 391.7 253 76.3
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 2.6e-106 389.0 253 76.7
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 2.6e-106 389.0 253 76.7
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 5.7e-106 387.9 252 75.0
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 7.5e-106 387.5 253 75.1
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 7.5e-106 387.5 253 75.1
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.3e-105 386.7 253 75.1
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 2.2e-105 386.0 255 75.3
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 8.3e-105 384.0 252 75.8
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.1e-104 383.6 253 75.1
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 1.1e-104 383.6 253 75.1
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.5e-103 378.6 252 74.2
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.0e-102 377.1 253 73.5
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 2.2e-102 375.9 252 73.4
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 5.5e-101 371.3 227 80.2
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.2e-100 370.2 254 73.2
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.6e-100 369.8 253 70.8
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 6.1e-100 367.9 253 71.9
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.8e-99 364.4 257 70.0
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 6.8e-99 364.4 257 70.0
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 8.8e-99 364.0 237 77.6
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.2e-98 363.6 279 63.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.4e-96 356.7 253 69.6
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 2.0e-95 352.8 275 66.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 2.7e-95 352.4 254 69.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 6.6e-94 347.8 253 71.9
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 6.6e-94 347.8 257 66.9
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 4.4e-90 335.1 253 66.0
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 4.6e-87 325.1 241 69.7
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-83 313.5 238 69.3
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.8e-75 286.6 252 57.9
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 4.6e-71 271.9 246 54.1
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.1e-67 259.2 177 71.8
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 4.4e-66 255.4 162 75.9
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 3.9e-62 242.3 202 64.9
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 5.2e-59 231.9 132 83.3
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 4.4e-58 228.8 132 82.6
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 8.1e-52 208.0 134 78.4
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.1e-48 197.6 167 64.7
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.5e-45 187.2 279 41.2
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 4.6e-39 165.6 107 70.1
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 3.7e-36 156.0 85 89.4
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 1.1e-29 134.4 334 29.3
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.6e-26 121.7 81 76.5
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.0e-25 121.3 62 85.5
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 6.9e-19 98.6 281 28.1
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.2e-18 97.8 59 72.9
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 5.9e-18 95.5 45 88.9
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.0e-17 92.4 93 55.9
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 2.0e-13 80.5 43 83.7
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.8e-12 76.6 41 75.6
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 6.9e-11 72.0 46 73.9
BcaB03g14888 Brassica carinata HOM05D005563 ORTHO05D006667 1.4e-06 57.8 64 56.2


User provided reference genes

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