Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold169G38738 Striga asiatica HOM05D003401 ORTHO05D003906 4.9e-78 294.3 138 100.0
SGA_v2.0_scaffold90G27720 Striga asiatica HOM05D003401 ORTHO05D003906 4.8e-73 277.7 135 95.6
SGA_v2.0_scaffold32G13360 Striga asiatica HOM05D003401 ORTHO05D003906 2.9e-70 268.5 130 97.7
SalBow3G0329 Salvia bowleyana HOM05D003401 ORTHO05D003906 3.6e-52 208.4 128 72.7
Oeu017643.1 Olea europaea HOM05D003401 ORTHO05D003906 3.0e-51 205.3 125 73.6
Gorai.008G083400 Gossypium raimondii HOM05D003401 ORTHO05D003906 1.1e-50 203.4 129 72.1
RcHm_v2.0_Chr2g0108051 Rosa chinensis HOM05D003401 ORTHO05D003906 2.0e-50 202.6 131 70.2
CAN.G1075.38 Capsicum annuum HOM05D003401 ORTHO05D003906 4.4e-50 201.4 128 70.3
FvH4_1g17720 Fragaria vesca HOM05D003401 ORTHO05D003906 1.3e-49 199.9 131 70.2
Gohir.A12G077500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.3e-49 199.9 129 70.5
Thecc.01G072800 Theobroma cacao HOM05D003401 ORTHO05D003906 1.3e-49 199.9 129 71.3
FAN28G1357 Fragaria x ananassa HOM05D003401 ORTHO05D003906 1.7e-49 199.5 131 69.5
TWI53G1432 Tripterygium wilfordii HOM05D003401 ORTHO05D003906 2.2e-49 199.1 128 68.8
Haze_15282 Corylus avellana HOM05D003401 ORTHO05D003906 2.8e-49 198.7 135 67.4
Nitab4.5_0002119g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 3.7e-49 198.4 128 68.8
DCAR_010819 Daucus carota HOM05D003401 ORTHO05D003906 4.8e-49 198.0 127 70.1
FAN19G2988 Fragaria x ananassa HOM05D003401 ORTHO05D003906 4.8e-49 198.0 131 69.5
Nitab4.5_0000142g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 4.8e-49 198.0 128 68.0
THA.LOC104821200 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 6.3e-49 197.6 125 70.4
Cfa004133 Carpinus fangiana HOM05D003401 ORTHO05D003906 1.4e-48 196.4 128 71.1
FAN26G0363 Fragaria x ananassa HOM05D003401 ORTHO05D003906 1.4e-48 196.4 131 68.7
Lsat_1_v5_gn_4_161660 Lactuca sativa HOM05D003401 ORTHO05D003906 1.8e-48 196.1 131 64.9
MD15G1297600 Malus domestica HOM05D003401 ORTHO05D003906 4.1e-48 194.9 129 68.2
SGA_v2.0_scaffold15G07458 Striga asiatica HOM05D003401 ORTHO05D003906 7.0e-48 194.1 127 68.5
MSTRG.2818 Avicennia marina HOM05D003401 ORTHO05D003906 9.1e-48 193.7 128 67.2
Peaxi162Scf00548g00653 Petunia axillaris HOM05D003401 ORTHO05D003906 1.6e-47 193.0 128 67.2
Solyc02g092360.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 1.6e-47 193.0 128 67.2
Aa31LG4G18330 Aethionema arabicum HOM05D003401 ORTHO05D003906 2.6e-47 192.2 126 68.3
COL.COLO4_11578 Corchorus olitorius HOM05D003401 ORTHO05D003906 3.5e-47 191.8 129 68.2
GSVIVG01000105001 Vitis vinifera HOM05D003401 ORTHO05D003906 3.5e-47 191.8 126 70.6
Cpa.g.sc6.15 Carica papaya HOM05D003401 ORTHO05D003906 4.5e-47 191.4 129 66.7
Potri.005G148800 Populus trichocarpa HOM05D003401 ORTHO05D003906 4.5e-47 191.4 128 69.5
Migut.H00347 Erythranthe guttata HOM05D003401 ORTHO05D003906 5.9e-47 191.0 128 68.8
Prupe.6G220400 Prunus persica HOM05D003401 ORTHO05D003906 5.9e-47 191.0 127 66.9
Sopen02g036910 Solanum pennellii HOM05D003401 ORTHO05D003906 5.9e-47 191.0 128 67.2
MSTRG.23670 Avicennia marina HOM05D003401 ORTHO05D003906 7.7e-47 190.7 125 68.0
Dinv26932 Davidia involucrata HOM05D003401 ORTHO05D003906 7.7e-47 190.7 129 68.2
CiPaw.02G002500 Carya illinoinensis HOM05D003401 ORTHO05D003906 1.0e-46 190.3 129 66.7
Duzib147G0481 Durio zibethinus HOM05D003401 ORTHO05D003906 1.7e-46 189.5 129 67.4
AUR62004010 Chenopodium quinoa HOM05D003401 ORTHO05D003906 3.8e-46 188.3 120 70.8
AUR62040237 Chenopodium quinoa HOM05D003401 ORTHO05D003906 3.8e-46 188.3 120 70.8
ClCG02G012620 Citrullus lanatus HOM05D003401 ORTHO05D003906 3.8e-46 188.3 127 66.9
Glyma.01G194300 Glycine max HOM05D003401 ORTHO05D003906 3.8e-46 188.3 129 65.9
Glyma.11G047600 Glycine max HOM05D003401 ORTHO05D003906 3.8e-46 188.3 129 65.9
Manes.12G114200 Manihot esculenta HOM05D003401 ORTHO05D003906 3.8e-46 188.3 128 68.8
Actinidia36431 Actinidia chinensis HOM05D003401 ORTHO05D003906 5.0e-46 188.0 126 67.5
MD02G1186200 Malus domestica HOM05D003401 ORTHO05D003906 5.0e-46 188.0 127 67.7
Actinidia11982 Actinidia chinensis HOM05D003401 ORTHO05D003906 6.5e-46 187.6 126 68.3
PGSC0003DMG400021417 Solanum tuberosum HOM05D003401 ORTHO05D003906 6.5e-46 187.6 128 67.2
Lj4A163G75 Lonicera japonica HOM05D003401 ORTHO05D003906 1.9e-45 186.0 126 69.0
PGR004G2146 Punica granatum HOM05D003401 ORTHO05D003906 1.9e-45 186.0 128 68.0
ECA232G0883 Erigeron canadensis HOM05D003401 ORTHO05D003906 2.5e-45 185.7 127 64.6
EL10Ac6g15618 Beta vulgaris HOM05D003401 ORTHO05D003906 3.2e-45 185.3 120 70.0
Sp5g12230 Schrenkiella parvula HOM05D003401 ORTHO05D003906 3.2e-45 185.3 128 63.3
MELO3C020910.2 Cucumis melo HOM05D003401 ORTHO05D003906 4.2e-45 184.9 127 66.9
HanXRQChr12g0373041 Helianthus annuus HOM05D003401 ORTHO05D003906 4.2e-45 184.9 127 64.6
HanXRQChr12g0373051 Helianthus annuus HOM05D003401 ORTHO05D003906 4.2e-45 184.9 127 64.6
Lalb_Chr05g0213711 Lupinus albus HOM05D003401 ORTHO05D003906 5.5e-45 184.5 131 65.6
Ah.03g140570 Amaranthus hybridus HOM05D003401 ORTHO05D003906 7.2e-45 184.1 120 69.2
CSS0028872 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 7.2e-45 184.1 133 63.9
Peaxi162Scf00118g01926 Petunia axillaris HOM05D003401 ORTHO05D003906 7.2e-45 184.1 135 63.7
CSS0017127 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 1.2e-44 183.3 131 64.9
Ciclev10025552m.g Citrus clementina HOM05D003401 ORTHO05D003906 1.2e-44 183.3 129 66.7
Manes.13G111500 Manihot esculenta HOM05D003401 ORTHO05D003906 1.6e-44 183.0 128 66.4
Sabra05G0118500 Salix brachista HOM05D003401 ORTHO05D003906 1.6e-44 183.0 128 66.4
Duzib264G0307 Durio zibethinus HOM05D003401 ORTHO05D003906 2.1e-44 182.6 129 64.3
Lj2g0017752 Lotus japonicus HOM05D003401 ORTHO05D003906 2.1e-44 182.6 129 64.3
Nitab4.5_0001417g0040 Nicotiana tabacum HOM05D003401 ORTHO05D003906 3.6e-44 181.8 128 65.6
Nitab4.5_0006813g0020 Nicotiana tabacum HOM05D003401 ORTHO05D003906 3.6e-44 181.8 128 65.6
CSS0025614 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 4.7e-44 181.4 126 65.9
CSS0041603 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 4.7e-44 181.4 126 65.9
A09p43030 Brassica napus HOM05D003401 ORTHO05D003906 6.1e-44 181.0 128 62.5
BraA09t39772Z Brassica rapa HOM05D003401 ORTHO05D003906 6.1e-44 181.0 128 62.5
Medtr5g015460 Medicago truncatula HOM05D003401 ORTHO05D003906 6.1e-44 181.0 129 63.6
Atru.chr3.1011_Atru.chr3.1012 Acer truncatum HOM05D003401 ORTHO05D003906 8.0e-44 180.6 128 66.4
Ca_24692_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 8.0e-44 180.6 126 65.9
PGSC0003DMG400009062 Solanum tuberosum HOM05D003401 ORTHO05D003906 8.0e-44 180.6 135 61.5
VMungo1215G2501 Vigna mungo HOM05D003401 ORTHO05D003906 8.0e-44 180.6 129 62.0
Thhalv10010347m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 1.0e-43 180.3 127 65.4
Sc16g0002870 Simmondsia chinensis HOM05D003401 ORTHO05D003906 1.0e-43 180.3 109 73.4
TAR381G1581 Trochodendron aralioides HOM05D003401 ORTHO05D003906 1.8e-43 179.5 137 62.8
Sed0014153 Sechium edule HOM05D003401 ORTHO05D003906 4.0e-43 178.3 127 63.8
AL5G29890 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 5.2e-43 177.9 125 63.2
C08p24910 Brassica napus HOM05D003401 ORTHO05D003906 5.2e-43 177.9 128 60.9
BolC8t50109H Brassica oleracea HOM05D003401 ORTHO05D003906 5.2e-43 177.9 128 60.9
Carub.0005s1624 Capsella rubella HOM05D003401 ORTHO05D003906 5.2e-43 177.9 126 63.5
Lalb_Chr09g0334091 Lupinus albus HOM05D003401 ORTHO05D003906 5.2e-43 177.9 129 62.0
AT3G49880 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 8.8e-43 177.2 126 62.7
Phvul.002G010600 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 8.8e-43 177.2 129 61.2
BcaB05g23171 Brassica carinata HOM05D003401 ORTHO05D003906 1.2e-42 176.8 125 60.8
BcaC07g39454 Brassica carinata HOM05D003401 ORTHO05D003906 1.2e-42 176.8 128 60.2
Hund16401 Selenicereus undatus HOM05D003401 ORTHO05D003906 1.2e-42 176.8 128 67.2
BcaB01g00655 Brassica carinata HOM05D003401 ORTHO05D003906 1.5e-42 176.4 128 60.2
Oeu011987.2 Olea europaea HOM05D003401 ORTHO05D003906 1.5e-42 176.4 128 62.5
Dinv04047 Davidia involucrata HOM05D003401 ORTHO05D003906 4.4e-42 174.9 129 63.6
Eucgr.I00703 Eucalyptus grandis HOM05D003401 ORTHO05D003906 4.4e-42 174.9 133 61.7
Psat0s281g0040 Pisum sativum HOM05D003401 ORTHO05D003906 4.4e-42 174.9 127 63.0
Glyma.17G160700 Glycine max HOM05D003401 ORTHO05D003906 7.5e-42 174.1 128 61.7
Sopen03g007790 Solanum pennellii HOM05D003401 ORTHO05D003906 7.5e-42 174.1 118 66.1
A01p24400 Brassica napus HOM05D003401 ORTHO05D003906 2.2e-41 172.6 127 60.6
Rhsim10G0099500 Rhododendron simsii HOM05D003401 ORTHO05D003906 2.2e-41 172.6 125 62.4
BraA01t02353Z Brassica rapa HOM05D003401 ORTHO05D003906 2.8e-41 172.2 127 60.6
CAN.G278.15 Capsicum annuum HOM05D003401 ORTHO05D003906 2.8e-41 172.2 126 61.9
CARHR158960 Cardamine hirsuta HOM05D003401 ORTHO05D003906 2.8e-41 172.2 126 61.9
Lj4g0026628 Lotus japonicus HOM05D003401 ORTHO05D003906 4.8e-41 171.4 126 61.9
Phvul.003G234900 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 4.8e-41 171.4 129 60.5
MD02G1186100 Malus domestica HOM05D003401 ORTHO05D003906 8.3e-41 170.6 128 61.7
unitig_899.g14895 Utricularia gibba HOM05D003401 ORTHO05D003906 2.4e-40 169.1 109 67.9
Solyc03g043970.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 1.2e-39 166.8 127 61.4
THA.LOC104827628 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 1.6e-39 166.4 125 61.6
Eucgr.H02307 Eucalyptus grandis HOM05D003401 ORTHO05D003906 2.0e-39 166.0 130 60.8
VMungo0251G1011 Vigna mungo HOM05D003401 ORTHO05D003906 2.7e-39 165.6 129 59.7
Nn5g30596 Nelumbo nucifera HOM05D003401 ORTHO05D003906 3.5e-39 165.2 119 64.7
Aqoxy6G02609 Aquilegia oxysepala HOM05D003401 ORTHO05D003906 4.5e-39 164.9 129 60.5
Sed0011165 Sechium edule HOM05D003401 ORTHO05D003906 4.5e-39 164.9 130 60.8
arahy.Tifrunner.gnm1.ann1.Q6V9VS Arachis hypogaea HOM05D003401 ORTHO05D003906 5.9e-39 164.5 136 56.6
arahy.Tifrunner.gnm1.ann1.DKM4K2 Arachis hypogaea HOM05D003401 ORTHO05D003906 7.7e-39 164.1 134 56.0
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 7.7e-39 164.1 121 65.3
Cc07_g07100 Coffea canephora HOM05D003401 ORTHO05D003906 2.2e-38 162.5 124 62.1
AL8G43760 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 1.5e-37 159.8 126 56.3
BcaC09g49981 Brassica carinata HOM05D003401 ORTHO05D003906 1.5e-37 159.8 126 56.3
C01p30420 Brassica napus HOM05D003401 ORTHO05D003906 1.5e-37 159.8 126 56.3
BolC1t02985H Brassica oleracea HOM05D003401 ORTHO05D003906 1.5e-37 159.8 126 56.3
Gohir.D03G028900 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.9e-37 159.5 129 58.1
TAR625G1105 Trochodendron aralioides HOM05D003401 ORTHO05D003906 1.9e-37 159.5 136 57.4
Aa31LG1G16090 Aethionema arabicum HOM05D003401 ORTHO05D003906 4.2e-37 158.3 121 60.3
Carub.0008s2693 Capsella rubella HOM05D003401 ORTHO05D003906 4.2e-37 158.3 126 55.6
Sp2g29110 Schrenkiella parvula HOM05D003401 ORTHO05D003906 5.5e-37 157.9 126 56.3
Gohir.A02G151500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 9.4e-37 157.1 129 56.6
PSO675G1608 Papaver somniferum HOM05D003401 ORTHO05D003906 1.2e-36 156.8 128 58.6
CsaV3_2G016740 Cucumis sativus L. HOM05D003401 ORTHO05D003906 1.6e-36 156.4 127 57.5
Thhalv10004148m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 2.1e-36 156.0 125 56.0
ATR1153G046 Amborella trichopoda HOM05D003401 ORTHO05D003906 2.7e-36 155.6 124 58.9
AT5G67540 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 2.7e-36 155.6 126 54.8
Gorai.003G030500 Gossypium raimondii HOM05D003401 ORTHO05D003906 4.7e-36 154.8 129 55.8
MELO3C020908.2 Cucumis melo HOM05D003401 ORTHO05D003906 6.1e-36 154.5 127 56.7
A06p32870 Brassica napus HOM05D003401 ORTHO05D003906 1.8e-35 152.9 125 55.2
BraA06t26219Z Brassica rapa HOM05D003401 ORTHO05D003906 1.8e-35 152.9 125 55.2
PSO017G3176 Papaver somniferum HOM05D003401 ORTHO05D003906 1.8e-35 152.9 139 53.2
PGR102G3082 Punica granatum HOM05D003401 ORTHO05D003906 2.3e-35 152.5 129 58.1
TPR.G9942 Trifolium pratense HOM05D003401 ORTHO05D003906 2.3e-35 152.5 95 69.5
C03p59600 Brassica napus HOM05D003401 ORTHO05D003906 4.0e-35 151.8 123 56.9
BolC3t18223H Brassica oleracea HOM05D003401 ORTHO05D003906 4.0e-35 151.8 123 56.9
CARHR280060 Cardamine hirsuta HOM05D003401 ORTHO05D003906 5.2e-35 151.4 117 55.6
PSO541G4016 Papaver somniferum HOM05D003401 ORTHO05D003906 8.8e-35 150.6 124 57.3
PSO170G0024 Papaver somniferum HOM05D003401 ORTHO05D003906 1.2e-34 150.2 139 52.5
Zm00001eb400800 Zea mays HOM05D003401 ORTHO05D003906 2.0e-34 149.4 125 53.6
Zm00001eb007800 Zea mays HOM05D003401 ORTHO05D003906 3.4e-34 148.7 125 52.8
Ca_22105_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 4.4e-34 148.3 124 56.5
Os12g0406100 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 2.2e-33 146.0 125 52.8
Peaxi162Scf00016g10134 Petunia axillaris HOM05D003401 ORTHO05D003906 5.4e-32 141.4 125 56.0
CDE07G0805 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 1.6e-31 139.8 123 52.8
TPR.G24262 Trifolium pratense HOM05D003401 ORTHO05D003906 1.0e-30 137.1 130 53.8
PGSC0003DMG400025929 Solanum tuberosum HOM05D003401 ORTHO05D003906 2.3e-30 136.0 116 57.8
Solyc01g109050.2 Solanum lycopersicum HOM05D003401 ORTHO05D003906 2.9e-30 135.6 88 64.8
CDE06G2486 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 3.8e-30 135.2 124 53.2
Sopen01g051250 Solanum pennellii HOM05D003401 ORTHO05D003906 5.0e-30 134.8 88 64.8
Medtr4g097110 Medicago truncatula HOM05D003401 ORTHO05D003906 1.9e-29 132.9 119 55.5
Cc02_g18210 Coffea canephora HOM05D003401 ORTHO05D003906 3.3e-29 132.1 118 55.9
CAN.G322.85 Capsicum annuum HOM05D003401 ORTHO05D003906 4.2e-29 131.7 88 63.6
Nitab4.5_0001401g0210 Nicotiana tabacum HOM05D003401 ORTHO05D003906 4.2e-29 131.7 88 64.8
Os01g0879400 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 4.2e-29 131.7 129 48.1
Nitab4.5_0008194g0090 Nicotiana tabacum HOM05D003401 ORTHO05D003906 9.5e-29 130.6 128 50.0
Gohir.D12G075700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 8.9e-27 124.0 69 75.4
Psat0s4670g0040 Pisum sativum HOM05D003401 ORTHO05D003906 9.8e-26 120.6 116 51.7
CDE04G3602 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 6.3e-25 117.9 87 59.8
Oeu054197.1 Olea europaea HOM05D003401 ORTHO05D003906 7.0e-24 114.4 69 66.7
Oeu000281.1 Olea europaea HOM05D003401 ORTHO05D003906 2.7e-23 112.5 128 46.1
Migut.B00291 Erythranthe guttata HOM05D003401 ORTHO05D003906 1.3e-22 110.2 109 47.7
Glyma.05G105700 Glycine max HOM05D003401 ORTHO05D003906 5.0e-22 108.2 128 43.8
Gohir.D10G191700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 8.6e-22 107.5 104 50.0
Gohir.A10G184500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.1e-21 107.1 96 55.2
SalBow6G5146 Salvia bowleyana HOM05D003401 ORTHO05D003906 5.6e-21 104.8 135 43.7
Gorai.011G214500 Gossypium raimondii HOM05D003401 ORTHO05D003906 7.3e-21 104.4 104 49.0
Zm00001eb145850 Zea mays HOM05D003401 ORTHO05D003906 2.6e-18 95.9 67 59.7
Pp3c24_13530 Physcomitrium patens HOM05D003401 ORTHO05D003906 2.2e-17 92.8 117 43.6
SalBow6G2088 Salvia bowleyana HOM05D003401 ORTHO05D003906 2.2e-17 92.8 131 43.5
Nn1g04550 Nelumbo nucifera HOM05D003401 ORTHO05D003906 3.7e-17 92.0 53 69.8
SMO228G0195 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 4.6e-15 85.1 89 41.6
Mapoly0190s0009 Marchantia polymorpha HOM05D003401 ORTHO05D003906 7.8e-15 84.3 73 46.6
SMO203G0154 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 2.3e-14 82.8 65 52.3
Pp3c24_11410 Physcomitrium patens HOM05D003401 ORTHO05D003906 6.6e-14 81.3 82 45.1
BcaB02g09914 Brassica carinata HOM05D003401 ORTHO05D003906 4.7e-12 75.1 79 43.0
CBR_g103 Chara braunii HOM05D003401 ORTHO05D003906 1.8e-11 73.2 57 56.1
CBR_g36888 Chara braunii HOM05D003401 ORTHO05D003906 2.0e-10 69.7 45 60.0


User provided reference genes

Program Settings