Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1999.6 1030 100.0
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1455.7 968 79.9
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1396.3 949 78.0
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1395.9 956 77.6
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 0.0e+00 1326.6 975 72.6
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1316.2 923 75.0
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1302.3 918 74.0
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1298.5 864 78.0
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1297.3 883 76.4
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1296.2 867 77.0
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1296.2 883 76.4
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1295.0 943 72.6
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1294.6 886 76.1
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1280.0 924 73.1
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1276.2 880 74.7
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1275.4 921 72.5
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1275.0 921 72.5
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1274.6 886 74.3
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1270.0 880 74.7
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1270.0 854 77.4
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1268.1 884 75.0
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1267.7 884 74.4
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1266.9 980 69.2
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1265.8 879 74.4
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1265.4 884 74.7
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1263.1 913 72.6
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1260.7 934 72.3
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1260.4 946 70.3
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1258.0 945 70.3
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1257.7 870 74.6
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1256.5 889 73.8
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1256.1 884 73.5
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1256.1 896 73.1
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1255.7 885 73.4
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1255.4 911 72.4
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1255.0 924 71.0
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1255.0 888 73.5
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1252.7 885 73.0
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1252.3 902 73.2
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1251.5 885 73.8
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1250.0 943 69.2
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1250.0 879 73.7
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1248.4 943 69.1
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1247.3 878 73.5
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1246.9 884 73.1
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1241.5 850 75.1
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1241.1 931 71.2
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1239.6 1021 67.5
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1238.4 892 72.2
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1235.3 926 71.7
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1232.6 881 72.6
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1229.9 880 72.2
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1227.6 905 71.0
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1227.2 911 69.8
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1226.8 878 73.6
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 0.0e+00 1225.7 928 71.0
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1225.3 882 71.8
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1224.2 884 72.7
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1221.5 884 71.9
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 0.0e+00 1218.8 872 72.4
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1211.1 881 70.6
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1211.1 854 73.3
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1209.1 1039 63.4
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1208.7 894 69.8
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1207.6 883 70.6
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1202.6 914 68.9
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1201.0 911 68.7
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1200.3 988 66.2
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1199.5 884 71.7
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 0.0e+00 1199.1 897 69.2
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1198.0 879 69.9
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1193.7 886 70.0
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1192.9 883 69.4
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1184.1 873 71.1
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1180.2 914 67.3
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1173.7 868 70.4
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1173.7 869 70.3
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1173.3 867 70.5
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 0.0e+00 1165.6 865 68.9
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 0.0e+00 1157.5 895 68.2
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1133.2 920 67.2
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 0.0e+00 1115.5 832 71.3
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 0.0e+00 1110.5 879 64.7
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1104.4 811 71.0
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 7.0e-302 1040.8 743 73.4
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 5.9e-301 1037.7 759 71.5
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 3.7e-295 1018.5 746 71.4
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 1.2e-282 976.9 870 58.4
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 3.0e-281 972.2 868 58.1
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 2.1e-274 949.5 894 55.8
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 1.1e-249 867.5 874 51.8
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 9.6e-235 817.8 625 67.5
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 3.8e-231 805.8 635 67.1
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 3.9e-220 769.2 625 66.2
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 6.3e-202 708.8 1085 43.1
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 3.1e-201 706.4 524 68.9
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 1.5e-200 704.1 574 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 3.2e-190 669.8 647 55.3
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 5.2e-188 662.5 889 43.8
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 2.2e-183 647.1 541 65.1
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 1.9e-182 644.0 480 69.8
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 2.0e-179 634.0 870 42.0
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 2.7e-176 623.6 440 73.6
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 9.2e-169 598.6 457 70.0
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 2.7e-168 597.0 530 62.6
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 2.6e-155 553.9 569 55.5
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 3.2e-153 547.0 421 67.0
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 4.7e-149 533.1 365 73.2
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 1.1e-124 452.2 734 38.8
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 2.0e-107 394.8 289 72.0
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 2.1e-104 384.8 340 62.6
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 1.1e-94 352.4 223 80.3
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 2.4e-92 344.7 262 61.5
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 5.3e-84 317.0 312 50.6
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 1.3e-82 312.4 305 58.0
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 5.9e-67 260.4 169 75.1
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 7.7e-67 260.0 217 64.1
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 5.5e-65 253.8 155 81.3
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 1.8e-63 248.8 227 59.5
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 2.0e-62 245.4 187 68.4
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 1.2e-56 226.1 187 69.0
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 1.5e-54 219.2 109 92.7
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 3.7e-53 214.5 254 48.0
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 5.0e-50 204.1 122 80.3
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 9.8e-46 189.9 120 75.0
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 2.0e-38 165.6 92 83.7
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 6.4e-37 160.6 109 69.7
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 9.2e-36 156.8 121 65.3
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 1.6e-35 156.0 101 78.2
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 2.2e-29 135.6 102 65.7
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 3.3e-25 121.7 74 83.8
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 4.0e-23 114.8 124 53.2
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.1e-20 106.7 101 61.4
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 7.8e-19 100.5 129 46.5
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 1.3e-18 99.8 80 63.8
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 2.3e-18 99.0 83 60.2
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 1.1e-17 96.7 87 58.6
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 1.3e-16 93.2 43 97.7
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 8.1e-16 90.5 60 73.3
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 1.4e-15 89.7 110 46.4
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 6.9e-15 87.4 51 82.4
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 9.9e-14 83.6 98 54.1
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 3.8e-13 81.6 48 81.2
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 8.4e-13 80.5 46 80.4
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 3.2e-12 78.6 458 23.8
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 9.3e-12 77.0 285 27.7
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.6e-11 76.3 295 24.4
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 3.5e-11 75.1 391 23.3
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 3.5e-11 75.1 508 23.4
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 3.5e-11 75.1 167 28.1
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 6.0e-11 74.3 178 29.8
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 7.8e-11 73.9 202 27.7
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 1.0e-10 73.6 250 26.0
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.7e-10 72.8 319 23.5
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.3e-10 72.4 463 22.2
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 2.3e-10 72.4 250 26.0
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 5.1e-10 71.2 199 27.1
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 3.3e-09 68.6 253 25.3
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 4.3e-09 68.2 507 21.5
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 7.3e-09 67.4 201 25.4
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 2.1e-08 65.9 281 24.6
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.1e-08 65.9 181 27.6
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.8e-08 65.5 179 27.9
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 3.6e-08 65.1 284 22.5
BolC5t34561H Brassica oleracea HOM05D002263 ORTHO05D003537 6.2e-08 64.3 168 28.6
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 1.1e-07 63.5 52 51.9
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 3.1e-07 62.0 49 67.3
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 5.3e-07 61.2 82 42.7
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 6.9e-07 60.8 176 25.6
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.2e-06 60.1 86 40.7
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 2.6e-06 58.9 178 25.3


User provided reference genes

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