Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 0.0e+00 1080.5 520 100.0
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 1.3e-272 942.6 524 86.1
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 9.4e-271 936.4 529 85.1
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 1.2e-265 919.5 530 83.2
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 6.1e-262 907.1 529 83.6
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 2.3e-261 905.2 540 81.5
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 5.1e-261 904.0 533 82.4
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 4.8e-259 897.5 523 82.2
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 1.8e-258 895.6 532 82.0
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 3.5e-257 891.3 533 81.6
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 5.0e-256 887.5 498 84.3
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 5.0e-256 887.5 523 81.8
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 8.5e-256 886.7 529 81.1
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 4.2e-255 884.4 532 80.1
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 7.2e-255 883.6 529 80.9
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 6.1e-254 880.6 547 78.1
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 6.1e-254 880.6 529 80.5
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 8.0e-254 880.2 539 79.0
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 1.4e-253 879.4 535 78.9
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 2.3e-253 878.6 535 79.4
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 2.3e-253 878.6 521 80.6
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 3.3e-252 874.8 538 79.2
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 4.4e-252 874.4 539 78.1
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 2.2e-251 872.1 532 78.6
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 4.8e-251 870.9 515 81.0
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 6.3e-251 870.5 525 80.0
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 7.0e-250 867.1 525 79.4
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 9.1e-250 866.7 512 81.1
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 9.1e-250 866.7 513 79.9
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 1.2e-249 866.3 562 75.6
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 4.5e-249 864.4 520 80.6
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 7.7e-249 863.6 511 81.6
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 1.3e-248 862.8 530 78.3
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 1.3e-248 862.8 536 78.4
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 1.7e-248 862.4 535 77.9
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 2.9e-248 861.7 522 78.4
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 3.8e-248 861.3 520 79.0
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 5.0e-248 860.9 527 78.9
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 8.5e-248 860.1 527 78.6
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 1.1e-247 859.8 526 78.1
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 1.9e-247 859.0 589 72.5
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 2.5e-247 858.6 511 81.0
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 2.5e-247 858.6 514 80.4
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 9.4e-247 856.7 511 79.6
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 1.6e-246 855.9 511 79.6
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 4.7e-246 854.4 539 76.8
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.0e-245 853.2 548 74.8
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 3.0e-245 851.7 501 80.8
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 6.8e-245 850.5 531 77.4
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.5e-244 849.4 535 75.9
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 2.6e-244 848.6 514 79.2
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 4.4e-244 847.8 533 77.3
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 1.3e-243 846.3 517 78.5
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 3.7e-243 844.7 510 78.2
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 3.7e-243 844.7 566 72.8
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 4.8e-243 844.3 489 81.2
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 8.3e-243 843.6 514 78.2
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 1.4e-242 842.8 510 78.0
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 1.8e-242 842.4 519 78.0
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 2.4e-242 842.0 536 75.4
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 3.1e-242 841.6 522 77.4
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 9.1e-242 840.1 514 78.0
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.7e-241 838.6 519 77.8
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 3.5e-241 838.2 517 78.9
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 7.7e-241 837.0 521 77.4
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 7.7e-241 837.0 515 78.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 2.2e-240 835.5 521 77.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.9e-240 835.1 469 84.4
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 6.5e-240 833.9 514 77.0
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 6.5e-240 833.9 514 78.0
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 1.5e-239 832.8 510 77.8
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 3.2e-239 831.6 524 77.7
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 3.2e-239 831.6 517 76.8
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 7.2e-239 830.5 522 77.4
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 1.2e-238 829.7 534 75.5
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.2e-238 829.7 521 77.2
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 2.7e-238 828.6 532 76.5
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 8.0e-238 827.0 542 74.7
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 3.0e-237 825.1 499 79.8
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 1.5e-236 822.8 531 76.5
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 2.6e-236 822.0 514 77.4
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 2.8e-235 818.5 530 74.9
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 6.3e-235 817.4 530 75.1
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 4.1e-234 814.7 495 78.2
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 9.1e-234 813.5 495 78.2
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.2e-233 813.1 512 75.4
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 2.7e-233 812.0 534 74.0
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 3.5e-233 811.6 523 76.9
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 7.7e-233 810.4 536 73.3
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 7.7e-233 810.4 536 73.3
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 1.5e-231 806.2 518 75.1
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 7.2e-231 803.9 537 73.2
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 7.2e-231 803.9 532 73.3
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.2e-230 803.1 537 73.2
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 3.4e-228 795.0 556 70.7
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 9.8e-228 793.5 524 74.0
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.3e-227 793.1 519 73.8
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.1e-226 790.0 556 70.3
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 1.1e-226 790.0 483 77.8
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 2.4e-226 788.9 534 71.5
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 4.4e-220 768.1 531 71.4
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.2e-217 760.0 532 69.4
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 4.3e-215 751.5 500 72.2
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.1e-213 746.9 477 74.2
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 8.3e-203 710.7 505 68.5
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 2.4e-202 709.1 426 77.9
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 2.4e-202 709.1 398 83.2
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 6.0e-201 704.5 524 66.6
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 5.6e-199 698.0 463 72.6
Gohir.A12G075200 Gossypium hirsutum HOM05D001054 ORTHO05D007110 1.1e-189 667.2 420 77.1
Dinv26904 Davidia involucrata HOM05D001054 ORTHO05D007110 1.1e-186 657.1 408 79.7
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.6e-185 653.3 511 65.9
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 1.4e-178 630.2 398 74.6
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 2.2e-171 606.3 332 85.2
HPP92_017568 Vanilla planifolia HOM05D001054 ORTHO05D007110 3.1e-149 532.7 343 74.1
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 1.7e-147 526.9 473 55.0
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 2.9e-147 526.2 452 56.9
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 1.4e-146 523.9 283 86.6
AL5G41245 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.5e-140 503.8 386 66.3
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.3e-128 463.4 346 66.2
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 3.4e-127 459.5 451 51.4
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 3.1e-125 453.0 451 53.4
SEGI_29234 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 9.1e-125 451.4 405 56.8
Glyma.05G104100 Glycine max HOM05D001054 ORTHO05D007110 5.6e-114 415.6 285 71.2
vmacro05388 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 2.5e-106 390.2 269 72.1
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 9.9e-87 325.1 181 82.9
FAN28G0670 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.1e-85 321.6 208 75.0
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 4.7e-81 306.2 182 79.1
AL7G13080 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 2.8e-73 280.4 223 62.3
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.8e-56 224.6 135 74.8
Actinidia11996 Actinidia chinensis HOM05D001054 ORTHO05D007110 4.2e-45 186.8 114 78.9
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 1.4e-40 171.8 102 77.5
Actinidia11995 Actinidia chinensis HOM05D001054 ORTHO05D038022 3.7e-33 147.1 81 82.7
Oeu038701.1 Olea europaea HOM05D001054 ORTHO05D038022 3.3e-26 124.0 65 86.2
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 3.0e-19 100.9 58 82.8
C07p62420 Brassica napus HOM05D001054 ORTHO05D007110 2.0e-18 98.2 53 83.0
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 2.6e-18 97.8 60 76.7
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 2.6e-18 97.8 60 76.7
BcaNung02059 Brassica carinata HOM05D001054 ORTHO05D007110 2.0e-15 88.2 50 76.0
Sed0007349 Sechium edule HOM05D001054 ORTHO05D007110 8.8e-11 72.8 78 46.2


User provided reference genes

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