Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 1.1e-89 333.2 165 100.0
SGA_v2.0_scaffold154G37198 Striga asiatica HOM05D004330 ORTHO05D406189 4.9e-16 88.6 132 47.7
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 4.2e-15 85.5 82 54.9
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 5.5e-15 85.1 82 54.9
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 3.5e-14 82.4 78 56.4
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 3.5e-14 82.4 78 56.4
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 4.6e-14 82.0 78 55.1
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 6.0e-14 81.6 78 55.1
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 6.0e-14 81.6 78 55.1
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.0e-13 80.9 43 81.4
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 1.0e-13 80.9 78 55.1
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 1.8e-13 80.1 78 55.1
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.8e-13 80.1 43 83.7
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 2.3e-13 79.7 78 55.1
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 2.3e-13 79.7 78 55.1
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.3e-13 79.7 78 53.8
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 3.0e-13 79.3 82 50.0
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 3.0e-13 79.3 81 51.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 3.9e-13 79.0 78 53.8
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 3.9e-13 79.0 78 53.8
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 5.1e-13 78.6 80 52.5
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 5.1e-13 78.6 78 52.6
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 6.7e-13 78.2 78 53.8
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 6.7e-13 78.2 78 53.8
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 6.7e-13 78.2 78 53.8
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 6.7e-13 78.2 43 79.1
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 6.7e-13 78.2 84 50.0
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 6.7e-13 78.2 81 49.4
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 51.3
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 8.7e-13 77.8 43 76.7
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 53.8
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 52.6
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 52.6
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 55.1
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 55.1
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 52.6
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 52.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 52.6
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 52.6
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 8.7e-13 77.8 78 52.6
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 1.1e-12 77.4 43 76.7
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 1.1e-12 77.4 78 52.6
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 1.1e-12 77.4 81 50.6
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 1.1e-12 77.4 43 79.1
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 1.5e-12 77.0 78 51.3
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 1.5e-12 77.0 78 52.6
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.9e-12 76.6 78 51.3
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.9e-12 76.6 78 51.3
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 1.9e-12 76.6 78 52.6
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-12 76.6 78 50.0
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.9e-12 76.6 78 50.0
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 1.9e-12 76.6 78 51.3
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 1.9e-12 76.6 78 51.3
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.5e-12 76.3 78 52.6
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.5e-12 76.3 78 52.6
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 2.5e-12 76.3 78 51.3
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.5e-12 76.3 43 74.4
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 2.5e-12 76.3 43 74.4
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 2.5e-12 76.3 78 53.8
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 52.6
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 51.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 51.3
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 51.3
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 50.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 53.8
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 52.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 3.3e-12 75.9 78 51.3
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.3e-12 75.9 84 48.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 4.3e-12 75.5 53 62.3
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 4.3e-12 75.5 78 50.0
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 4.3e-12 75.5 78 51.3
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.6e-12 75.1 78 50.0
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.6e-12 75.1 78 50.0
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 5.6e-12 75.1 78 51.3
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 5.6e-12 75.1 78 52.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 5.6e-12 75.1 43 74.4
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 5.6e-12 75.1 78 51.3
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 5.6e-12 75.1 78 48.7
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 7.4e-12 74.7 78 50.0
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 7.4e-12 74.7 78 48.7
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 7.4e-12 74.7 78 51.3
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 7.4e-12 74.7 78 50.0
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 7.4e-12 74.7 78 51.3
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 7.4e-12 74.7 43 72.1
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 9.6e-12 74.3 78 51.3
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 9.6e-12 74.3 78 50.0
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 9.6e-12 74.3 43 74.4
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 9.6e-12 74.3 43 74.4
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 1.3e-11 73.9 78 48.7
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 1.3e-11 73.9 78 48.7
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 1.3e-11 73.9 78 48.7
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 1.6e-11 73.6 78 48.7
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 2.1e-11 73.2 78 48.7
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 2.1e-11 73.2 78 48.7
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 2.1e-11 73.2 78 48.7
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-11 73.2 78 48.7
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 2.1e-11 73.2 78 48.7
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 2.1e-11 73.2 78 48.7
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 2.1e-11 73.2 78 48.7
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 2.1e-11 73.2 43 72.1
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.8e-11 72.8 43 72.1
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.8e-11 72.8 43 72.1
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 2.8e-11 72.8 78 47.4
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 2.8e-11 72.8 78 48.7
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 2.8e-11 72.8 43 74.4
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 3.7e-11 72.4 78 48.7
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 3.7e-11 72.4 78 48.7
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-11 72.4 43 69.8
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.7e-11 72.4 43 69.8
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 3.7e-11 72.4 78 48.7
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 3.7e-11 72.4 43 74.4
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 3.7e-11 72.4 45 66.7
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 4.8e-11 72.0 78 48.7
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 4.8e-11 72.0 78 47.4
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 4.8e-11 72.0 78 48.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 4.8e-11 72.0 43 67.4
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 6.2e-11 71.6 78 48.7
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 6.2e-11 71.6 78 48.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 6.2e-11 71.6 78 48.7
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 6.2e-11 71.6 43 69.8
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.2e-11 71.6 43 72.1
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.4e-10 70.5 78 48.7
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 1.4e-10 70.5 78 46.2
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.8e-10 70.1 46 67.4
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 1.8e-10 70.1 78 46.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 3.1e-10 69.3 43 72.1
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.6e-09 66.2 40 70.0
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 7.6e-09 64.7 43 60.5
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.3e-08 63.9 43 65.1
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 9.3e-07 57.8 43 58.1
SGA_v2.0_scaffold11G05741 Striga asiatica HOM05D000390 ORTHO05D000577 4.6e-06 55.5 29 89.7


User provided reference genes

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