Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold119G32662 Striga asiatica HOM05D004365 ORTHO05D005123 1.6e-70 269.2 133 100.0
Migut.N00047 Erythranthe guttata HOM05D004365 ORTHO05D005123 1.4e-42 176.4 84 95.2
ECA246G3323 Erigeron canadensis HOM05D004365 ORTHO05D005123 5.5e-42 174.5 84 94.0
HanXRQChr05g0145921 Helianthus annuus HOM05D004365 ORTHO05D005123 5.5e-42 174.5 84 94.0
CSS0008168 Camellia sinensis var. sinensis HOM05D004365 ORTHO05D005123 7.2e-42 174.1 84 94.0
Oeu016485.1 Olea europaea HOM05D004365 ORTHO05D005123 7.2e-42 174.1 84 92.9
Rhsim02G0004900 Rhododendron simsii HOM05D004365 ORTHO05D005123 7.2e-42 174.1 83 94.0
Lsat_1_v5_gn_6_116841 Lactuca sativa HOM05D004365 ORTHO05D005123 1.6e-41 172.9 84 91.7
MSTRG.21775 Avicennia marina HOM05D004365 ORTHO05D005123 2.1e-41 172.6 84 94.0
vmacro15189 Vaccinium macrocarpon HOM05D004365 ORTHO05D005123 2.1e-41 172.6 80 96.2
Actinidia13364 Actinidia chinensis HOM05D004365 ORTHO05D005123 2.7e-41 172.2 84 92.9
CANSAT54G2312 Cannabis sativa HOM05D004365 ORTHO05D005123 2.7e-41 172.2 84 92.9
Nn4g25611 Nelumbo nucifera HOM05D004365 ORTHO05D005123 2.7e-41 172.2 84 92.9
Sed0001961 Sechium edule HOM05D004365 ORTHO05D005123 2.7e-41 172.2 84 92.9
TWI73G0828 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.7e-41 172.2 84 91.7
ClCG05G006460 Citrullus lanatus HOM05D004365 ORTHO05D005123 6.1e-41 171.0 84 91.7
Hund03115 Selenicereus undatus HOM05D004365 ORTHO05D005123 6.1e-41 171.0 84 91.7
Aqoxy2G02775 Aquilegia oxysepala HOM05D004365 ORTHO05D005123 8.0e-41 170.6 84 91.7
Cc03_g00970 Coffea canephora HOM05D004365 ORTHO05D005123 8.0e-41 170.6 84 92.9
Lalb_Chr18g0058831 Lupinus albus HOM05D004365 ORTHO05D005123 8.0e-41 170.6 84 91.7
Sed0006030 Sechium edule HOM05D004365 ORTHO05D005123 8.0e-41 170.6 84 91.7
Haze_01277 Corylus avellana HOM05D004365 ORTHO05D005123 1.4e-40 169.9 84 91.7
QL06p011635 Quercus lobata HOM05D004365 ORTHO05D005123 1.4e-40 169.9 83 91.6
Hund11961 Selenicereus undatus HOM05D004365 ORTHO05D005123 1.4e-40 169.9 84 90.5
CiPaw.01G139700 Carya illinoinensis HOM05D004365 ORTHO05D005123 1.8e-40 169.5 84 90.5
Thecc.04G297700 Theobroma cacao HOM05D004365 ORTHO05D005123 1.8e-40 169.5 84 90.5
GSVIVG01035016001 Vitis vinifera HOM05D004365 ORTHO05D005123 1.8e-40 169.5 84 91.7
TAR365G0998 Trochodendron aralioides HOM05D004365 ORTHO05D005123 2.3e-40 169.1 84 89.3
FvH4_4g19480 Fragaria vesca HOM05D004365 ORTHO05D005123 3.0e-40 168.7 84 90.5
FAN07G2773 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.0e-40 168.7 84 90.5
Glyma.09G037400 Glycine max HOM05D004365 ORTHO05D005123 3.0e-40 168.7 84 91.7
RcHm_v2.0_Chr4g0424591 Rosa chinensis HOM05D004365 ORTHO05D005123 3.0e-40 168.7 84 90.5
Sc05g0009630 Simmondsia chinensis HOM05D004365 ORTHO05D005123 3.0e-40 168.7 84 89.3
Ah.13g072000 Amaranthus hybridus HOM05D004365 ORTHO05D005123 3.9e-40 168.3 84 89.3
Eucgr.H02666 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.9e-40 168.3 80 93.8
Gohir.A01G034300 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.9e-40 168.3 84 89.3
Gohir.D01G023535 Gossypium hirsutum HOM05D004365 ORTHO05D005123 3.9e-40 168.3 84 89.3
Gorai.002G030000 Gossypium raimondii HOM05D004365 ORTHO05D005123 3.9e-40 168.3 84 89.3
arahy.Tifrunner.gnm1.ann1.79Y4XM Arachis hypogaea HOM05D004365 ORTHO05D005123 5.2e-40 167.9 84 89.3
arahy.Tifrunner.gnm1.ann1.C4ZZV2 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.2e-40 167.9 84 89.3
FAN12G3053 Fragaria x ananassa HOM05D004365 ORTHO05D005123 5.2e-40 167.9 80 92.5
Ca_01870_v3 Cicer arietinum L. HOM05D004365 ORTHO05D005123 6.7e-40 167.5 84 90.5
Duzib052G0793 Durio zibethinus HOM05D004365 ORTHO05D005123 6.7e-40 167.5 84 89.3
Hma1.2p1_0013F.1_g008720 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 6.7e-40 167.5 84 89.3
AUR62016130 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.1e-39 166.8 80 91.2
AUR62041403 Chenopodium quinoa HOM05D004365 ORTHO05D005123 1.1e-39 166.8 80 91.2
Ciclev10006256m.g Citrus clementina HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 88.1
Nitab4.5_0000647g0090 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 89.3
PSO761G0124 Papaver somniferum HOM05D004365 ORTHO05D005123 1.1e-39 166.8 80 91.2
Peaxi162Scf00164g01133 Petunia axillaris HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 89.3
Prupe.1G122000 Prunus persica HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 88.1
Solyc05g053430.3 Solanum lycopersicum HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 89.3
Sopen05g031930 Solanum pennellii HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 89.3
PGSC0003DMG400027213 Solanum tuberosum HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 89.3
unitig_22.g6354 Utricularia gibba HOM05D004365 ORTHO05D005123 1.1e-39 166.8 84 90.5
Nitab4.5_0006365g0010 Nicotiana tabacum HOM05D004365 ORTHO05D005123 1.5e-39 166.4 92 81.5
PGR004G2507 Punica granatum HOM05D004365 ORTHO05D005123 1.5e-39 166.4 84 91.7
CDE02G0371 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.0e-39 166.0 84 89.3
Phvul.009G256100 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 2.0e-39 166.0 84 90.5
CDE09G0896 Ceratophyllum demersum HOM05D004365 ORTHO05D005123 2.6e-39 165.6 84 88.1
DCAR_023347 Daucus carota HOM05D004365 ORTHO05D005123 2.6e-39 165.6 84 89.3
MD16G1157100 Malus domestica HOM05D004365 ORTHO05D005123 2.6e-39 165.6 84 88.1
FvH4_3g15650 Fragaria vesca HOM05D004365 ORTHO05D005123 3.3e-39 165.2 81 88.9
Lj6g0010863 Lotus japonicus HOM05D004365 ORTHO05D005123 3.3e-39 165.2 84 89.3
PSO210G6722 Papaver somniferum HOM05D004365 ORTHO05D005123 4.4e-39 164.9 80 90.0
Psat6g078760 Pisum sativum HOM05D004365 ORTHO05D005123 5.7e-39 164.5 84 89.3
Duzib212G0477 Durio zibethinus HOM05D004365 ORTHO05D005123 9.7e-39 163.7 84 86.9
MD13G1156200 Malus domestica HOM05D004365 ORTHO05D005123 9.7e-39 163.7 84 85.7
Mapoly0028s0097 Marchantia polymorpha HOM05D004365 ORTHO05D005123 9.7e-39 163.7 84 88.1
SMO174G0170 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 9.7e-39 163.7 83 86.7
Glyma.15G142700 Glycine max HOM05D004365 ORTHO05D005123 1.3e-38 163.3 84 89.3
Medtr2g034520 Medicago truncatula HOM05D004365 ORTHO05D005123 1.3e-38 163.3 84 88.1
TPR.G5757 Trifolium pratense HOM05D004365 ORTHO05D005123 1.3e-38 163.3 84 88.1
Dinv44302 Davidia involucrata HOM05D004365 ORTHO05D005123 2.8e-38 162.2 84 88.1
FAN12G1077 Fragaria x ananassa HOM05D004365 ORTHO05D005123 3.7e-38 161.8 80 88.8
HPP92_002026 Vanilla planifolia HOM05D004365 ORTHO05D005123 4.8e-38 161.4 84 86.9
Manes.15G005400 Manihot esculenta HOM05D004365 ORTHO05D005123 6.3e-38 161.0 84 85.7
Pp3c18_17910 Physcomitrium patens HOM05D004365 ORTHO05D005123 6.3e-38 161.0 84 85.7
Atru.chr4.3028 Acer truncatum HOM05D004365 ORTHO05D005123 8.2e-38 160.6 79 87.3
BcaC09g50324 Brassica carinata HOM05D004365 ORTHO05D005123 8.2e-38 160.6 84 83.3
BcaNung00211 Brassica carinata HOM05D004365 ORTHO05D005123 8.2e-38 160.6 84 83.3
A01p21300 Brassica napus HOM05D004365 ORTHO05D005123 8.2e-38 160.6 84 83.3
BolC1t02605H Brassica oleracea HOM05D004365 ORTHO05D005123 8.2e-38 160.6 84 83.3
Os12g0560400 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 8.2e-38 160.6 84 85.7
THA.LOC104820300 Tarenaya hassleriana HOM05D004365 ORTHO05D005123 1.1e-37 160.2 84 83.3
BraA01t02037Z Brassica rapa HOM05D004365 ORTHO05D005123 1.4e-37 159.8 80 85.0
BraA08t33228Z Brassica rapa HOM05D004365 ORTHO05D005123 1.4e-37 159.8 129 62.0
SEGI_37796 Sequoiadendron giganteum HOM05D004365 ORTHO05D005123 1.4e-37 159.8 84 84.5
AL3G29960 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 2.4e-37 159.1 84 83.3
Thhalv10021989m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 2.4e-37 159.1 80 85.0
SalBow2G2782 Salvia bowleyana HOM05D004365 ORTHO05D005123 2.4e-37 159.1 73 97.3
SMO364G0316 Selaginella moellendorffii HOM05D004365 ORTHO05D005123 2.4e-37 159.1 84 83.3
TWI09G0163 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 2.4e-37 159.1 83 84.3
Aa31LG8G4020 Aethionema arabicum HOM05D004365 ORTHO05D005123 3.1e-37 158.7 84 82.1
BcaB08g34342 Brassica carinata HOM05D004365 ORTHO05D005123 3.1e-37 158.7 84 82.1
BcaC07g37975 Brassica carinata HOM05D004365 ORTHO05D005123 3.1e-37 158.7 84 82.1
A08p12300 Brassica napus HOM05D004365 ORTHO05D005123 3.1e-37 158.7 84 82.1
BolC8t48354H Brassica oleracea HOM05D004365 ORTHO05D005123 3.1e-37 158.7 84 82.1
Potri.008G106900 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.1e-37 158.7 84 84.5
AL7G38770 Arabidopsis lyrata HOM05D004365 ORTHO05D005123 4.1e-37 158.3 84 82.1
AT4G16265 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 4.1e-37 158.3 84 82.1
Carub.0003s1673 Capsella rubella HOM05D004365 ORTHO05D005123 4.1e-37 158.3 84 83.3
Carub.0007s2525 Capsella rubella HOM05D004365 ORTHO05D005123 4.1e-37 158.3 84 82.1
SpUn0413_0020 Schrenkiella parvula HOM05D004365 ORTHO05D005123 4.1e-37 158.3 84 82.1
BcaB04g18375 Brassica carinata HOM05D004365 ORTHO05D005123 5.3e-37 157.9 81 82.7
Cpa.g.sc9.86 Carica papaya HOM05D004365 ORTHO05D005123 7.0e-37 157.5 84 82.1
Sp7g14780 Schrenkiella parvula HOM05D004365 ORTHO05D005123 7.0e-37 157.5 80 83.8
Zm00001eb088460 Zea mays HOM05D004365 ORTHO05D005123 7.0e-37 157.5 80 83.8
AT3G16980 Arabidopsis thaliana HOM05D004365 ORTHO05D005123 9.1e-37 157.1 84 82.1
CARHR222650 Cardamine hirsuta HOM05D004365 ORTHO05D005123 1.2e-36 156.8 84 81.0
Sabra08G0080800 Salix brachista HOM05D004365 ORTHO05D005123 1.2e-36 156.8 84 83.3
Sabra10G0110500 Salix brachista HOM05D004365 ORTHO05D005123 1.2e-36 156.8 84 84.5
Thhalv10026603m.g Eutrema salsugineum HOM05D004365 ORTHO05D005123 1.6e-36 156.4 96 72.9
Zm00001eb086380 Zea mays HOM05D004365 ORTHO05D005123 1.6e-36 156.4 80 83.8
Eucgr.H02672 Eucalyptus grandis HOM05D004365 ORTHO05D005123 3.5e-36 155.2 89 82.0
Zm00001eb138580 Zea mays HOM05D004365 ORTHO05D005123 1.0e-35 153.7 80 81.2
CARHR092230 Cardamine hirsuta HOM05D004365 ORTHO05D005123 2.9e-35 152.1 84 81.0
arahy.Tifrunner.gnm1.ann1.MX4EIU Arachis hypogaea HOM05D004365 ORTHO05D005123 8.5e-35 150.6 83 80.7
DCAR_027008 Daucus carota HOM05D004365 ORTHO05D005123 1.1e-34 150.2 73 90.4
Zm00001eb230190 Zea mays HOM05D004365 ORTHO05D005123 1.5e-34 149.8 80 81.2
Os03g0102200 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 5.5e-34 147.9 80 80.0
Lalb_Chr08g0234431 Lupinus albus HOM05D004365 ORTHO05D005123 1.2e-33 146.7 84 81.0
EL10Ac3g05464 Beta vulgaris HOM05D004365 ORTHO05D005123 3.6e-33 145.2 70 90.0
A09p28560 Brassica napus HOM05D004365 ORTHO05D005123 8.0e-33 144.1 80 76.2
BraA09t38417Z Brassica rapa HOM05D004365 ORTHO05D005123 8.0e-33 144.1 80 76.2
Manes.03G202800 Manihot esculenta HOM05D004365 ORTHO05D005123 1.0e-32 143.7 84 77.4
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 3.4e-31 138.7 80 72.5
Potri.010G142500 Populus trichocarpa HOM05D004365 ORTHO05D005123 3.4e-31 138.7 86 76.7
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 4.4e-31 138.3 80 72.5
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 4.4e-31 138.3 80 72.5
Phvul.003G112600 Phaseolus vulgaris HOM05D004365 ORTHO05D005123 5.7e-31 137.9 99 63.6
Sabra10G0110300 Salix brachista HOM05D004365 ORTHO05D005123 1.3e-30 136.7 73 82.2
Glyma.07G241200 Glycine max HOM05D004365 ORTHO05D005123 1.7e-30 136.3 83 69.9
Lj4g0028172 Lotus japonicus HOM05D004365 ORTHO05D005123 3.7e-30 135.2 83 71.1
HPP92_005120 Vanilla planifolia HOM05D004365 ORTHO05D005123 3.1e-29 132.1 83 68.7
VMungo1215G2752 Vigna mungo HOM05D004365 ORTHO05D005123 5.3e-29 131.3 83 68.7
TWI53G1753 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 1.0e-27 127.1 83 66.3
Dinv15193 Davidia involucrata HOM05D004365 ORTHO05D005123 6.5e-27 124.4 67 88.1
TWI53G0542 Tripterygium wilfordii HOM05D004365 ORTHO05D005123 6.5e-27 124.4 83 66.3
Zm00001eb270680 Zea mays HOM05D004365 ORTHO05D005123 5.5e-26 121.3 64 84.4
Mapoly0087s0071 Marchantia polymorpha HOM05D004365 ORTHO05D005123 7.2e-26 120.9 80 65.0
Os07g0615800 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.6e-25 119.8 96 52.1
arahy.Tifrunner.gnm1.ann1.2XVX11 Arachis hypogaea HOM05D004365 ORTHO05D005123 5.2e-24 114.8 83 67.5
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.8e-21 106.3 57 87.7
VMungo1309G0143 Vigna mungo HOM05D004365 ORTHO05D005123 4.1e-21 105.1 57 87.7
SHI00177 Sapria himalayana HOM05D004365 ORTHO05D005123 7.0e-21 104.4 71 64.8
Hma1.2p1_0096F.1_g047650 Hydrangea macrophylla HOM05D004365 ORTHO05D005123 9.1e-21 104.0 55 83.6
ATR0665G356 Amborella trichopoda HOM05D004365 ORTHO05D005123 1.6e-20 103.2 57 86.0
Zm00001eb137030 Zea mays HOM05D004365 ORTHO05D005123 2.7e-20 102.4 61 77.0
Haze_26633 Corylus avellana HOM05D004365 ORTHO05D005123 3.6e-17 92.0 76 52.6
TPR.G10905 Trifolium pratense HOM05D004365 ORTHO05D005123 3.6e-17 92.0 57 75.4
MCO01G087 Micromonas commoda HOM05D004365 ORTHO05D005123 3.0e-16 89.0 77 51.9
Hma1.2p1_0234F.1_g098400 Hydrangea macrophylla HOM05D001088 ORTHO05D005123 5.7e-15 84.7 52 75.0
Zm00001eb327460 Zea mays HOM05D004365 ORTHO05D005123 1.7e-11 73.2 100 39.0
PRCOL_00000204 Prasinoderma coloniale HOM05D004365 ORTHO05D005123 1.5e-10 70.1 84 42.9
Os11g0676650 Oryza sativa ssp. japonica HOM05D004365 ORTHO05D005123 1.9e-10 69.7 40 77.5
Cre12.g505750 Chlamydomonas reinhardtii HOM05D004365 ORTHO05D005123 1.2e-09 67.0 73 45.2
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 1.3e-06 57.0 47 46.8
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.7e-06 56.6 45 48.9
AagrBONN_evm.TU.Sc2ySwM_117.3306 Anthoceros agrestis HOM05D004365 ORTHO05D005123 4.9e-06 55.1 90 35.6


User provided reference genes

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