Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold114G32022 Striga asiatica HOM05D006350 ORTHO05D007850 0.0e+00 1361.7 662 100.0
MSTRG.15966 Avicennia marina HOM05D006350 ORTHO05D007850 2.2e-296 1021.9 671 74.7
Migut.M01281 Erythranthe guttata HOM05D006350 ORTHO05D007850 1.4e-292 1009.2 677 74.6
Nitab4.5_0000091g0460 Nicotiana tabacum HOM05D006350 ORTHO05D007850 2.8e-272 941.8 661 69.0
CAN.G404.6 Capsicum annuum HOM05D006350 ORTHO05D007850 1.8e-271 939.1 665 68.9
Nitab4.5_0002613g0020 Nicotiana tabacum HOM05D006350 ORTHO05D007850 2.9e-269 931.8 657 68.6
Solyc03g031820.4 Solanum lycopersicum HOM05D006350 ORTHO05D007850 2.9e-269 931.8 661 68.2
Sopen03g005680 Solanum pennellii HOM05D006350 ORTHO05D007850 2.9e-269 931.8 661 68.1
Peaxi162Scf00521g00815 Petunia axillaris HOM05D006350 ORTHO05D007850 8.5e-269 930.2 652 70.2
Rhsim02G0112000 Rhododendron simsii HOM05D006350 ORTHO05D007850 2.3e-266 922.2 674 66.8
GSVIVG01012630001 Vitis vinifera HOM05D006350 ORTHO05D007850 5.7e-265 917.5 683 65.4
MD10G1314700 Malus domestica HOM05D006350 ORTHO05D007850 3.7e-264 914.8 675 65.5
Ciclev10014587m.g Citrus clementina HOM05D006350 ORTHO05D007850 8.3e-264 913.7 659 67.8
CSS0026996 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 2.3e-261 905.6 668 65.0
DCAR_008125 Daucus carota HOM05D006350 ORTHO05D007850 6.5e-261 904.0 689 65.6
CSS0007285 Camellia sinensis var. sinensis HOM05D006350 ORTHO05D007850 5.5e-260 901.0 668 64.8
PGR004G2689 Punica granatum HOM05D006350 ORTHO05D007850 9.5e-260 900.2 664 66.3
Prupe.4G026100 Prunus persica HOM05D006350 ORTHO05D007850 4.7e-259 897.9 683 64.4
RcHm_v2.0_Chr5g0003961 Rosa chinensis HOM05D006350 ORTHO05D007850 1.7e-256 889.4 664 64.5
Manes.17G035000 Manihot esculenta HOM05D006350 ORTHO05D007850 2.8e-256 888.6 665 65.4
CANSAT80G1390 Cannabis sativa HOM05D006350 ORTHO05D007850 6.3e-256 887.5 679 64.1
Dinv20017 Davidia involucrata HOM05D006350 ORTHO05D007850 8.3e-256 887.1 640 68.0
CiPaw.09G087000 Carya illinoinensis HOM05D006350 ORTHO05D007850 1.1e-255 886.7 668 64.7
Eucgr.D00813 Eucalyptus grandis HOM05D006350 ORTHO05D007850 4.1e-255 884.8 663 64.6
QL05p075148 Quercus lobata HOM05D006350 ORTHO05D007850 4.1e-255 884.8 683 64.0
QL93p0073_0722 Quercus lobata HOM05D006350 ORTHO05D007850 5.4e-255 884.4 683 63.8
vmacro15831 Vaccinium macrocarpon HOM05D006350 ORTHO05D007850 5.4e-255 884.4 770 59.1
Thecc.06G214100 Theobroma cacao HOM05D006350 ORTHO05D007850 9.2e-255 883.6 657 66.4
TAR629G2651 Trochodendron aralioides HOM05D006350 ORTHO05D007850 2.0e-254 882.5 688 62.2
COL.COLO4_31726 Corchorus olitorius HOM05D006350 ORTHO05D007850 1.7e-253 879.4 658 64.9
AUR62012643 Chenopodium quinoa HOM05D006350 ORTHO05D007850 5.0e-253 877.9 687 62.9
Gohir.A10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 8.0e-251 870.5 657 65.6
Gohir.D10G015200 Gossypium hirsutum HOM05D006350 ORTHO05D007850 1.8e-250 869.4 657 65.0
TWI63G1388 Tripterygium wilfordii HOM05D006350 ORTHO05D007850 1.8e-250 869.4 663 63.0
Gorai.011G016800 Gossypium raimondii HOM05D006350 ORTHO05D007850 3.0e-250 868.6 657 65.1
FAN21G3377 Fragaria x ananassa HOM05D006350 ORTHO05D007850 4.4e-249 864.8 658 63.8
THA.LOC104821036 Tarenaya hassleriana HOM05D006350 ORTHO05D007850 1.3e-248 863.2 663 62.6
ClCG01G022180 Citrullus lanatus HOM05D006350 ORTHO05D007850 2.9e-248 862.1 660 63.2
FvH4_3g02650 Fragaria vesca HOM05D006350 ORTHO05D007850 1.4e-247 859.8 659 63.4
Glyma.04G064300 Glycine max HOM05D006350 ORTHO05D007850 1.4e-247 859.8 661 63.7
Medtr7g050860 Medicago truncatula HOM05D006350 ORTHO05D007850 1.4e-247 859.8 651 65.0
Ca_07431_v3 Cicer arietinum L. HOM05D006350 ORTHO05D007850 1.9e-247 859.4 661 63.8
Potri.004G022500 Populus trichocarpa HOM05D006350 ORTHO05D007850 3.2e-247 858.6 660 65.6
ECA248G2377 Erigeron canadensis HOM05D006350 ORTHO05D007850 9.2e-247 857.1 661 63.4
Lj1g0012123 Lotus japonicus HOM05D006350 ORTHO05D007850 2.3e-245 852.4 651 64.2
arahy.Tifrunner.gnm1.ann1.SC0FBD Arachis hypogaea HOM05D006350 ORTHO05D007850 4.3e-244 848.2 659 63.0
Phvul.002G048900 Phaseolus vulgaris HOM05D006350 ORTHO05D007850 9.5e-244 847.0 659 63.7
HanXRQChr16g0504561 Helianthus annuus HOM05D006350 ORTHO05D007850 2.1e-243 845.9 664 62.7
Atru.chr10.2148 Acer truncatum HOM05D006350 ORTHO05D007850 3.6e-243 845.1 603 68.0
Aqoxy4G01993 Aquilegia oxysepala HOM05D006350 ORTHO05D007850 4.7e-243 844.7 666 61.9
VMungo1215G2459 Vigna mungo HOM05D006350 ORTHO05D007850 4.7e-243 844.7 662 63.1
Sabra04G0012300 Salix brachista HOM05D006350 ORTHO05D007850 8.9e-242 840.5 703 61.9
CsaV3_6G049260 Cucumis sativus L. HOM05D006350 ORTHO05D007850 3.7e-240 835.1 657 62.3
PSO541G3631 Papaver somniferum HOM05D006350 ORTHO05D007850 6.4e-240 834.3 678 60.5
PSO675G5568 Papaver somniferum HOM05D006350 ORTHO05D007850 9.2e-239 830.5 679 60.1
arahy.Tifrunner.gnm1.ann1.QV9JTX Arachis hypogaea HOM05D006350 ORTHO05D007850 6.0e-238 827.8 699 59.7
BolC3t13297H Brassica oleracea HOM05D006350 ORTHO05D007850 2.3e-237 825.9 651 61.6
MBI02_g10104_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 5.1e-237 824.7 686 58.5
Duzib160G0024 Durio zibethinus HOM05D006350 ORTHO05D007850 8.6e-237 823.9 654 63.5
Thhalv10012972m.g Eutrema salsugineum HOM05D006350 ORTHO05D007850 4.3e-236 821.6 652 61.3
C03p08000 Brassica napus HOM05D006350 ORTHO05D007850 4.7e-235 818.1 651 61.0
Sp6g28900 Schrenkiella parvula HOM05D006350 ORTHO05D007850 1.4e-234 816.6 658 61.4
AL6G25990 Arabidopsis lyrata HOM05D006350 ORTHO05D007850 1.8e-234 816.2 651 60.7
A03p07020 Brassica napus HOM05D006350 ORTHO05D007850 6.8e-234 814.3 651 61.4
Aa31LG11G14390 Aethionema arabicum HOM05D006350 ORTHO05D007850 8.9e-234 813.9 653 61.4
Carub.0006s1334 Capsella rubella HOM05D006350 ORTHO05D007850 8.9e-234 813.9 652 62.1
AT5G15170 Arabidopsis thaliana HOM05D006350 ORTHO05D007850 2.2e-232 809.3 651 60.8
Lalb_Chr09g0319631 Lupinus albus HOM05D006350 ORTHO05D007850 4.1e-231 805.1 655 61.2
Lj1A1225T76 Lonicera japonica HOM05D006350 ORTHO05D007850 2.3e-229 799.3 668 61.2
TPR.G10193 Trifolium pratense HOM05D006350 ORTHO05D007850 1.4e-226 790.0 608 64.1
Os07g0530100 Oryza sativa ssp. japonica HOM05D006350 ORTHO05D007850 4.0e-226 788.5 679 57.0
EL10Ac8g19892 Beta vulgaris HOM05D006350 ORTHO05D007850 2.9e-224 782.3 682 59.1
Zm00001eb323120 Zea mays HOM05D006350 ORTHO05D007850 1.4e-223 780.0 673 57.2
BcaB01g05074 Brassica carinata HOM05D006350 ORTHO05D007850 1.9e-220 769.6 651 58.5
Sc05g0008900 Simmondsia chinensis HOM05D006350 ORTHO05D007850 3.1e-218 762.3 494 71.3
FAN25G1413 Fragaria x ananassa HOM05D006350 ORTHO05D007850 7.1e-215 751.1 659 57.8
Sed0019871 Sechium edule HOM05D006350 ORTHO05D007850 1.2e-214 750.4 511 68.9
CARHR198140 Cardamine hirsuta HOM05D006350 ORTHO05D007850 2.1e-214 749.6 594 61.6
Hund23514 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.1e-210 737.3 653 57.7
MELO3C007370.2 Cucumis melo HOM05D006350 ORTHO05D007850 2.0e-209 733.0 557 64.1
Psat3g152760 Pisum sativum HOM05D006350 ORTHO05D007850 7.6e-209 731.1 543 66.9
unitig_748.g7139 Utricularia gibba HOM05D006350 ORTHO05D007850 4.2e-207 725.3 526 68.1
Cc02_g11700 Coffea canephora HOM05D006350 ORTHO05D007850 1.0e-205 720.7 438 76.5
PGSC0003DMG400024073 Solanum tuberosum HOM05D006350 ORTHO05D007850 9.6e-204 714.1 516 67.2
CDE05G1739 Ceratophyllum demersum HOM05D006350 ORTHO05D007850 1.2e-201 707.2 617 57.1
Haze_08403 Corylus avellana HOM05D006350 ORTHO05D007850 6.9e-194 681.4 531 63.1
AUR62022012 Chenopodium quinoa HOM05D006350 ORTHO05D007850 2.0e-193 679.9 684 51.5
ATR0109G008 Amborella trichopoda HOM05D006350 ORTHO05D007850 2.5e-191 672.9 582 56.9
SEGI_36047 Sequoiadendron giganteum HOM05D006350 ORTHO05D007850 2.1e-190 669.8 652 53.4
Cpa.g.sc198.9 Carica papaya HOM05D006350 ORTHO05D007850 1.2e-177 627.5 659 50.7
Lsat_1_v5_gn_1_127601 Lactuca sativa HOM05D006350 ORTHO05D000125 2.7e-174 616.3 534 57.7
Mapoly0129s0047 Marchantia polymorpha HOM05D006350 ORTHO05D007850 1.4e-165 587.4 707 44.8
Dinv17832 Davidia involucrata HOM05D006350 ORTHO05D007850 2.0e-164 583.6 414 67.6
Oeu051224.2 Olea europaea HOM05D006350 ORTHO05D007850 3.3e-164 582.8 692 48.4
SMO117G0269 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 1.0e-157 561.2 482 57.3
Pp3c10_12100 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.2e-153 547.7 619 47.3
Hund21368 Selenicereus undatus HOM05D006350 ORTHO05D007850 5.9e-153 545.4 342 74.6
Nn1g03636 Nelumbo nucifera HOM05D006350 ORTHO05D007850 6.8e-125 452.2 659 41.0
Hund21371 Selenicereus undatus HOM05D006350 ORTHO05D007850 1.1e-117 428.3 294 68.4
Eucgr.L01729 Eucalyptus grandis HOM05D006350 ORTHO05D007850 2.7e-97 360.5 452 44.0
MBI04_g30799_MAGBIO Magnolia biondii HOM05D006350 ORTHO05D007850 1.4e-85 321.6 408 45.3
HPP92_017615 Vanilla planifolia HOM05D006350 ORTHO05D007850 9.6e-79 298.9 216 65.3
MCO12G349 Micromonas commoda HOM05D006350 ORTHO05D007850 1.2e-76 292.0 499 34.9
VMungo1383G3417 Vigna mungo HOM05D006350 ORTHO05D007850 2.9e-75 287.3 175 76.0
Dinv17831 Davidia involucrata HOM05D006350 ORTHO05D007850 6.1e-73 279.6 201 68.7
PRCOL_00001871 Prasinoderma coloniale HOM05D006350 ORTHO05D007850 3.4e-68 263.8 478 36.0
SMO172G0198 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 6.7e-64 249.6 310 44.8
Cc02_g11710 Coffea canephora HOM05D006350 ORTHO05D007850 7.4e-63 246.1 236 55.5
Cre01.g053200 Chlamydomonas reinhardtii HOM05D006350 ORTHO05D007850 1.3e-59 235.3 588 30.8
VMungo0251G1161 Vigna mungo HOM05D006350 ORTHO05D007850 2.9e-59 234.2 129 81.4
HPP92_017616 Vanilla planifolia HOM05D006350 ORTHO05D007850 5.2e-40 170.2 268 37.3
unitig_748.g7138 Utricularia gibba HOM05D006350 ORTHO05D007850 8.0e-33 146.4 114 60.5
SMO198G0039 Selaginella moellendorffii HOM05D006350 ORTHO05D007850 2.9e-27 127.9 148 44.6
Nn1g00065 Nelumbo nucifera HOM05D006350 ORTHO05D007850 8.0e-25 119.8 145 42.1
CBR_g28581 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-24 118.6 146 46.6
Sc05g0008890 Simmondsia chinensis HOM05D006350 ORTHO05D007850 9.8e-23 112.8 153 41.8
HPP92_017614 Vanilla planifolia HOM05D006350 ORTHO05D007850 2.5e-18 98.2 82 56.1
C03p17100 Brassica napus HOM05D006350 ORTHO05D007850 1.4e-13 82.4 59 66.1
BolC3t14124H Brassica oleracea HOM05D006350 ORTHO05D007850 1.4e-13 82.4 59 66.1
Cfa024753 Carpinus fangiana HOM05D006350 ORTHO05D007850 1.9e-13 82.0 619 20.0
Nn1g07028 Nelumbo nucifera HOM05D006350 ORTHO05D007850 5.4e-13 80.5 72 52.8
Cfa024022 Carpinus fangiana HOM05D006350 ORTHO05D007850 5.0e-11 73.9 486 22.0
Nn1g07027 Nelumbo nucifera HOM05D006350 ORTHO05D007850 1.5e-10 72.4 65 49.2
Pp3c20_13830 Physcomitrium patens HOM05D006350 ORTHO05D007850 1.5e-10 72.4 104 44.2
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 1.5e-10 72.4 264 23.1
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 7.3e-10 70.1 260 27.7
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 9.5e-10 69.7 335 23.6
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 9.5e-10 69.7 267 24.0
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 1.2e-09 69.3 265 23.0
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 1.6e-09 68.9 219 28.3
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 4.7e-09 67.4 239 25.5
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 4.7e-09 67.4 209 24.4
MBI11_g45190_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 8.1e-09 66.6 199 28.6
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 1.1e-08 66.2 196 24.5
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.1e-08 66.2 190 30.0
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 1.4e-08 65.9 233 25.8
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 2.3e-08 65.1 198 24.2
AT5G07400 Arabidopsis thaliana HOM05D007034 ORTHO05D008665 4.0e-08 64.3 381 23.6
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 5.2e-08 63.9 192 28.6
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 5.2e-08 63.9 228 25.0
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 5.2e-08 63.9 195 26.2
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 8.9e-08 63.2 221 25.8
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 1.2e-07 62.8 243 26.3
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.2e-07 62.8 193 28.5
DCAR_001582 Daucus carota HOM05D006350 ORTHO05D007850 1.5e-07 62.4 87 44.8
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 2.0e-07 62.0 201 23.9
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 2.6e-07 61.6 319 24.5
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 2.6e-07 61.6 197 25.9
QL10p035731 Quercus lobata HOM05D007034 ORTHO05D008665 3.4e-07 61.2 192 27.6
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 3.4e-07 61.2 260 22.7
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 4.4e-07 60.8 194 24.7
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 4.4e-07 60.8 197 22.8
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 4.4e-07 60.8 201 23.4
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 4.4e-07 60.8 202 26.7
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 4.4e-07 60.8 376 23.4
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 5.8e-07 60.5 120 30.0
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 5.8e-07 60.5 125 31.2
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 7.5e-07 60.1 260 24.6
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 9.8e-07 59.7 194 26.8
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 9.8e-07 59.7 194 26.8
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 1.3e-06 59.3 213 24.9
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 1.3e-06 59.3 194 26.8
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 1.3e-06 59.3 201 25.4
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 1.3e-06 59.3 201 24.4
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 1.3e-06 59.3 193 28.5
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.3e-06 59.3 197 24.4
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.3e-06 59.3 124 28.2
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 1.3e-06 59.3 193 26.4
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 1.7e-06 58.9 193 25.9
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 1.7e-06 58.9 198 25.3
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.7e-06 58.9 193 24.4
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 1.7e-06 58.9 196 26.0
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 1.7e-06 58.9 198 25.3
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 2.2e-06 58.5 248 23.4
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 2.2e-06 58.5 194 24.2
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 2.9e-06 58.2 195 25.6
arahy.Tifrunner.gnm1.ann1.PQF71L Arachis hypogaea HOM05D004293 ORTHO05D007850 2.9e-06 58.2 44 54.5
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 2.9e-06 58.2 193 24.9
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 3.7e-06 57.8 196 26.0
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 3.7e-06 57.8 144 29.2
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 4.9e-06 57.4 147 25.9
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 4.9e-06 57.4 202 22.8
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 4.9e-06 57.4 207 24.2
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 8.3e-06 56.6 189 27.5


User provided reference genes

Program Settings