Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 2.7e-133 478.8 264 100.0
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 2.0e-104 382.9 265 77.0
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 3.8e-95 352.1 266 76.3
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 8.0e-93 344.4 265 77.0
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 5.2e-92 341.7 246 75.2
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 5.2e-92 341.7 272 71.3
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-90 336.3 268 69.0
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 2.8e-90 335.9 260 72.3
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 3.7e-90 335.5 256 69.1
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 4.8e-90 335.1 235 76.6
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.4e-89 332.8 257 70.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 3.1e-89 332.4 264 68.6
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.6e-88 330.1 245 69.8
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.0e-88 329.7 266 68.4
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.7e-88 329.3 184 88.6
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.5e-88 328.9 266 68.0
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 5.9e-88 328.2 260 73.5
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.9e-88 328.2 264 67.8
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 5.9e-88 328.2 262 67.9
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 7.7e-88 327.8 260 69.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.0e-87 327.4 257 69.6
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.0e-87 327.4 257 69.6
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 1.3e-87 327.0 257 69.3
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 1.3e-87 327.0 257 70.0
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 1.3e-87 327.0 268 69.0
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.7e-87 326.6 270 68.1
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.9e-87 325.9 245 68.6
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 2.9e-87 325.9 243 70.4
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 5.0e-87 325.1 183 85.2
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 5.0e-87 325.1 184 84.8
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 8.5e-87 324.3 244 70.5
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.5e-87 324.3 262 66.0
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.5e-86 323.6 245 68.2
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.9e-86 323.2 243 69.1
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 2.5e-86 322.8 254 70.9
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 2.5e-86 322.8 180 87.2
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 3.2e-86 322.4 252 69.0
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.2e-86 322.4 247 68.8
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 4.2e-86 322.0 260 68.1
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 4.2e-86 322.0 180 87.8
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 4.2e-86 322.0 265 71.3
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 4.2e-86 322.0 261 67.0
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 5.5e-86 321.6 258 68.2
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 9.4e-86 320.9 264 67.8
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 9.4e-86 320.9 219 73.5
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 9.4e-86 320.9 246 72.0
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.6e-85 320.1 182 84.6
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 1.6e-85 320.1 182 85.2
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 1.6e-85 320.1 259 68.0
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 2.1e-85 319.7 258 66.3
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.1e-85 319.7 263 68.8
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.1e-85 319.7 250 67.6
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 2.7e-85 319.3 253 67.6
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.7e-85 319.3 259 69.1
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.7e-85 319.3 261 70.5
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 4.7e-85 318.5 258 66.3
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 6.1e-85 318.2 261 67.0
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 8.0e-85 317.8 266 65.4
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 8.0e-85 317.8 260 68.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 8.0e-85 317.8 267 65.5
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.4e-84 317.0 266 66.2
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 1.4e-84 317.0 246 70.3
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.8e-84 316.6 262 66.0
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 2.3e-84 316.2 258 66.3
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 3.0e-84 315.8 261 66.3
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 5.2e-84 315.1 261 67.4
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 8.8e-84 314.3 269 66.2
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 1.5e-83 313.5 260 70.4
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 3.4e-83 312.4 265 67.2
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.4e-83 312.0 259 68.0
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.5e-83 311.2 260 66.9
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.5e-83 311.2 261 67.4
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 7.5e-83 311.2 266 66.2
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 9.8e-83 310.8 245 69.0
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 9.8e-83 310.8 263 65.8
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.7e-82 310.1 234 69.2
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 2.8e-82 309.3 271 65.7
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.7e-82 308.9 262 65.6
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 6.3e-82 308.1 178 86.0
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 6.3e-82 308.1 261 66.7
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 8.3e-82 307.8 263 63.9
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.4e-81 307.0 266 64.7
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 7.0e-81 304.7 254 66.1
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 9.2e-81 304.3 178 84.3
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 9.2e-81 304.3 243 69.5
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-80 303.9 261 63.2
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 2.0e-80 303.1 269 65.4
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.0e-80 303.1 257 66.1
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.7e-80 302.8 184 78.8
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 4.5e-80 302.0 236 69.1
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 7.7e-80 301.2 263 63.9
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 2.9e-79 299.3 260 63.8
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 6.6e-79 298.1 245 67.3
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 6.6e-79 298.1 215 70.7
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 8.6e-79 297.7 258 63.2
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 9.5e-78 294.3 263 63.9
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.6e-77 292.4 167 82.0
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.8e-76 290.0 249 64.7
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.3e-76 289.7 257 63.0
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 4.0e-76 288.9 246 63.8
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 4.4e-75 285.4 175 83.4
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 5.7e-75 285.0 184 74.5
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.3e-74 283.9 162 83.3
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 1.3e-74 283.9 180 77.2
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 1.7e-74 283.5 184 75.0
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.2e-74 283.1 254 64.2
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.2e-74 283.1 225 65.3
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 8.3e-74 281.2 237 63.7
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.8e-73 280.0 166 82.5
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 4.1e-73 278.9 251 62.2
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.2e-72 277.3 245 60.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.6e-72 276.9 255 58.4
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.0e-72 276.6 256 61.3
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 4.6e-72 275.4 247 60.3
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 5.9e-72 275.0 245 59.6
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.0e-71 272.7 258 58.5
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 5.0e-71 271.9 185 74.1
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 6.6e-71 271.6 179 74.3
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.1e-70 270.8 180 71.7
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.1e-70 270.8 245 59.2
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-70 270.8 245 58.8
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.1e-70 270.8 245 58.8
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 1.5e-70 270.4 254 58.3
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.3e-70 268.9 250 57.2
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.6e-69 266.9 180 71.1
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.6e-69 266.9 258 62.0
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 2.1e-69 266.5 179 73.7
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.8e-69 266.2 252 58.3
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 3.6e-69 265.8 183 74.9
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.4e-68 263.8 180 72.8
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 2.3e-68 263.1 249 57.4
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.3e-66 257.3 268 55.2
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 4.6e-64 248.8 164 76.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 1.0e-63 247.7 152 79.6
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.3e-63 247.3 225 59.6
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 7.3e-62 241.5 176 68.2
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.4e-60 237.3 262 55.7
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.7e-58 230.3 210 65.2
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.9e-58 228.8 202 64.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 1.3e-55 220.7 135 79.3
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 2.8e-53 213.0 119 87.4
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.8e-52 210.3 152 67.8
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.3e-50 204.1 266 52.3
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 1.9e-49 200.3 124 83.1
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.2e-48 197.6 183 62.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 6.0e-48 195.3 184 60.3
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 3.0e-47 193.0 212 51.9
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 1.4e-44 184.1 184 59.2
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 6.8e-44 181.8 128 74.2
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.5e-43 180.6 236 47.5
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.5e-43 180.6 160 62.5
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 3.8e-42 176.0 167 59.9
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.3e-39 167.5 155 54.2
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-35 154.5 169 55.0
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 1.7e-31 140.6 103 68.0
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 1.5e-30 137.5 80 82.5
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 7.4e-30 135.2 79 81.0
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 2.8e-29 133.3 78 83.3
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.7e-23 112.1 121 53.7
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 1.1e-22 111.3 65 78.5
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.6e-22 109.0 88 64.8
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.1e-20 104.8 114 51.8
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 4.8e-13 79.3 221 35.3
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 8.2e-13 78.6 52 76.9
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.8e-12 77.4 150 39.3
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 2.2e-10 70.5 109 37.6
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 2.2e-10 70.5 156 30.1
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 3.8e-10 69.7 152 33.6
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 5.0e-10 69.3 54 64.8
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 1.9e-09 67.4 66 48.5
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.0e-07 61.6 49 65.3
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-07 61.2 45 62.2
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 2.5e-06 57.0 107 38.3


User provided reference genes

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