Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_39868 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.1e-65 253.1 122 100.0
SEGI_12812 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 1.7e-58 229.2 112 99.1
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.4e-52 208.8 121 81.0
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 4.1e-52 208.0 114 86.0
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 4.1e-52 208.0 114 86.0
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 5.4e-52 207.6 114 83.3
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 9.2e-52 206.8 114 86.8
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.2e-51 206.5 114 86.0
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 1.2e-51 206.5 114 86.0
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 1.6e-51 206.1 114 86.0
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 1.6e-51 206.1 114 86.0
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 2.7e-51 205.3 114 85.1
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 3.5e-51 204.9 114 84.2
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 4.6e-51 204.5 121 78.5
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 4.6e-51 204.5 114 84.2
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 4.6e-51 204.5 114 84.2
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 4.6e-51 204.5 118 82.2
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.6e-51 204.5 114 85.1
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 6.0e-51 204.1 114 85.1
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 6.0e-51 204.1 114 85.1
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 6.0e-51 204.1 114 85.1
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 6.0e-51 204.1 114 83.3
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 6.0e-51 204.1 114 83.3
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 7.8e-51 203.8 114 83.3
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 7.8e-51 203.8 118 82.2
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 7.8e-51 203.8 114 84.2
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 84.2
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 83.3
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 83.3
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 84.2
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 84.2
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 84.2
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 84.2
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 84.2
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 1.0e-50 203.4 114 84.2
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.3e-50 203.0 121 77.7
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 83.3
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 83.3
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 83.3
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 83.3
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 83.3
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 84.2
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 84.2
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 1.3e-50 203.0 114 84.2
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 1.3e-50 203.0 113 85.0
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.7e-50 202.6 110 85.5
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 1.7e-50 202.6 121 78.5
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 1.7e-50 202.6 121 78.5
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 1.7e-50 202.6 114 83.3
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.7e-50 202.6 114 83.3
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 1.7e-50 202.6 114 83.3
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.7e-50 202.6 114 81.6
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.7e-50 202.6 114 81.6
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 1.7e-50 202.6 114 81.6
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.7e-50 202.6 110 87.3
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 2.3e-50 202.2 114 84.2
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 2.3e-50 202.2 113 84.1
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 3.0e-50 201.8 114 83.3
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 3.0e-50 201.8 114 81.6
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 3.9e-50 201.4 114 82.5
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 3.9e-50 201.4 114 82.5
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 3.9e-50 201.4 114 82.5
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 3.9e-50 201.4 114 82.5
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 3.9e-50 201.4 114 82.5
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 3.9e-50 201.4 114 82.5
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 83.3
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 5.0e-50 201.1 113 84.1
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 5.0e-50 201.1 114 82.5
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 6.6e-50 200.7 121 76.9
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 6.6e-50 200.7 114 83.3
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 6.6e-50 200.7 114 82.5
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 6.6e-50 200.7 114 82.5
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 8.6e-50 200.3 114 82.5
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 1.1e-49 199.9 113 82.3
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.1e-49 199.9 110 84.5
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.1e-49 199.9 120 75.8
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 1.1e-49 199.9 120 75.8
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 1.1e-49 199.9 111 85.6
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 1.1e-49 199.9 114 81.6
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 1.5e-49 199.5 114 81.6
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 1.5e-49 199.5 114 81.6
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 1.9e-49 199.1 118 79.7
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 1.9e-49 199.1 114 81.6
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 1.9e-49 199.1 114 81.6
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.9e-49 199.1 114 81.6
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 1.9e-49 199.1 114 81.6
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 2.5e-49 198.7 114 82.5
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 2.5e-49 198.7 114 81.6
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 2.5e-49 198.7 114 80.7
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 2.5e-49 198.7 114 81.6
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 3.3e-49 198.4 114 80.7
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 4.3e-49 198.0 114 79.8
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 4.3e-49 198.0 114 79.8
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 4.3e-49 198.0 114 82.5
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 4.3e-49 198.0 114 79.8
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 4.3e-49 198.0 114 82.5
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 5.6e-49 197.6 114 80.7
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.6e-49 197.6 114 79.8
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 5.6e-49 197.6 114 79.8
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 5.6e-49 197.6 114 78.9
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 7.3e-49 197.2 114 78.1
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 7.3e-49 197.2 114 81.6
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 1.2e-48 196.4 114 80.7
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 1.2e-48 196.4 114 80.7
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 1.2e-48 196.4 114 80.7
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.1e-48 195.7 114 78.9
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 2.1e-48 195.7 114 78.9
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 2.1e-48 195.7 114 78.1
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 2.8e-48 195.3 108 84.3
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 2.8e-48 195.3 114 79.8
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 2.8e-48 195.3 114 78.9
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.8e-48 195.3 114 78.9
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 4.7e-48 194.5 114 81.6
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 1.1e-47 193.4 114 80.7
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 1.1e-47 193.4 114 77.2
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 6.8e-47 190.7 114 76.3
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 1.2e-46 189.9 107 86.0
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 2.0e-46 189.1 114 78.9
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 2.6e-46 188.7 124 74.2
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.4e-46 188.3 114 77.2
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 3.4e-46 188.3 114 77.2
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 4.4e-46 188.0 114 76.3
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 7.5e-46 187.2 120 73.3
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 1.3e-45 186.4 112 77.7
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 2.9e-45 185.3 114 75.4
CSS0044853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 7.1e-44 180.6 112 80.4
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 7.1e-44 180.6 154 61.0
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 7.1e-44 180.6 159 59.7
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 2.1e-43 179.1 110 76.4
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 6.0e-43 177.6 97 83.5
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 6.0e-43 177.6 104 80.8
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 5.1e-42 174.5 121 66.9
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 2.5e-41 172.2 121 69.4
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 3.3e-41 171.8 110 72.7
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 1.6e-40 169.5 114 72.8
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 2.1e-40 169.1 114 72.8
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 8.1e-40 167.2 97 81.4
Duzib268G1397 Durio zibethinus HOM05D003708 ORTHO05D004452 6.4e-37 157.5 106 70.8
Lj3C651T3 Lonicera japonica HOM05D003708 ORTHO05D004452 7.1e-36 154.1 120 64.2
Lj3C650T5 Lonicera japonica HOM05D003708 ORTHO05D004452 9.2e-36 153.7 110 69.1
Eucgr.D02438 Eucalyptus grandis HOM05D003708 ORTHO05D004452 4.3e-33 144.8 79 88.6
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 3.1e-31 138.7 114 60.5
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 6.8e-31 137.5 114 59.6
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 8.7e-26 120.6 106 60.4
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.4e-22 108.2 115 53.0
TAR383G0428 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.9e-21 104.8 110 51.8
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 6.4e-21 104.4 56 85.7
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 1.9e-20 102.8 60 80.0
Cpa.g.sc106.11 Carica papaya HOM05D003708 ORTHO05D004452 3.5e-19 98.6 59 74.6
VMungo0720G2093 Vigna mungo HOM05D003708 ORTHO05D004452 1.7e-18 96.3 56 78.6
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.9e-18 95.1 115 47.0
TAR628G1665 Trochodendron aralioides HOM05D003708 ORTHO05D004452 3.9e-18 95.1 105 50.5
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 6.6e-18 94.4 97 56.7
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 5.8e-14 81.3 48 77.1
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 6.4e-13 77.8 65 63.1
CANSAT25G3134 Cannabis sativa HOM05D003708 ORTHO05D004452 2.4e-12 75.9 45 77.8
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 1.3e-10 70.1 40 77.5


User provided reference genes

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