Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.4e-73 277.3 142 100.0
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.4e-73 277.3 142 100.0
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 1.5e-58 229.6 141 81.6
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 1.5e-58 229.6 141 81.6
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 2.0e-58 229.2 141 83.0
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 2.6e-58 228.8 141 79.4
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 3.4e-58 228.4 141 81.6
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 1.0e-57 226.9 141 81.6
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 1.0e-57 226.9 141 80.9
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.3e-57 226.5 141 80.9
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 1.3e-57 226.5 140 80.7
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.3e-57 226.5 141 80.9
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 1.7e-57 226.1 141 79.4
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 2.9e-57 225.3 140 80.0
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 5.0e-57 224.6 141 79.4
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 6.5e-57 224.2 141 80.1
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 6.5e-57 224.2 140 78.6
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 6.5e-57 224.2 141 80.1
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 1.1e-56 223.4 141 78.0
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 1.1e-56 223.4 140 78.6
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.4e-56 223.0 141 79.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.9e-56 222.6 141 77.3
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.9e-56 222.6 141 77.3
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 1.9e-56 222.6 140 76.4
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 2.5e-56 222.2 140 78.6
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 3.2e-56 221.9 141 78.0
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 3.2e-56 221.9 140 75.7
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 5.5e-56 221.1 141 78.0
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 7.2e-56 220.7 142 77.5
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 7.2e-56 220.7 140 77.9
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.2e-55 219.9 141 78.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 1.2e-55 219.9 141 78.0
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.6e-55 219.5 140 77.1
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 2.1e-55 219.2 141 78.0
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 2.1e-55 219.2 141 75.9
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 2.7e-55 218.8 142 75.4
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 3.6e-55 218.4 142 76.8
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 3.6e-55 218.4 141 75.2
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 4.6e-55 218.0 142 77.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 6.1e-55 217.6 140 75.0
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.9e-55 217.2 139 76.3
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.9e-55 217.2 139 76.3
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 7.9e-55 217.2 139 76.3
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 1.0e-54 216.9 142 76.8
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 1.3e-54 216.5 141 74.5
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.3e-54 216.5 141 75.2
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.3e-54 215.7 141 74.5
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 3.0e-54 215.3 141 76.6
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 3.9e-54 214.9 141 75.2
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 5.1e-54 214.5 141 74.5
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.7e-54 214.2 141 77.3
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 6.7e-54 214.2 141 74.5
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 8.7e-54 213.8 141 74.5
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 8.7e-54 213.8 141 75.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 8.7e-54 213.8 141 77.3
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 8.7e-54 213.8 142 74.6
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 8.7e-54 213.8 142 74.6
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 1.1e-53 213.4 141 74.5
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 1.1e-53 213.4 141 73.8
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 1.5e-53 213.0 141 74.5
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 1.9e-53 212.6 140 73.6
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 1.9e-53 212.6 142 74.6
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 2.5e-53 212.2 148 72.3
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 3.3e-53 211.8 140 73.6
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 7.4e-53 210.7 140 75.0
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 9.7e-53 210.3 139 72.7
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 9.7e-53 210.3 141 75.9
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 9.7e-53 210.3 141 73.8
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.3e-52 209.9 139 71.9
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 2.2e-52 209.1 141 75.9
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 4.8e-52 208.0 141 71.6
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 4.8e-52 208.0 141 73.8
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 6.3e-52 207.6 137 74.5
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 1.4e-51 206.5 139 71.2
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 1.8e-51 206.1 139 72.7
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 3.1e-51 205.3 140 72.1
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 5.3e-51 204.5 139 71.9
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 6.9e-51 204.1 142 71.1
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.5e-50 203.0 139 71.2
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 1.5e-50 203.0 141 72.3
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 1.5e-50 203.0 141 71.6
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 3.4e-50 201.8 139 69.8
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 3.4e-50 201.8 141 70.2
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 4.5e-50 201.4 141 73.8
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 7.7e-50 200.7 139 70.5
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.7e-50 200.7 139 70.5
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.3e-49 199.9 136 72.1
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.3e-49 199.9 139 70.5
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 5.0e-49 198.0 141 70.9
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 5.0e-49 198.0 139 70.5
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 3.2e-48 195.3 139 69.1
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 3.2e-48 195.3 139 69.1
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 3.2e-48 195.3 139 69.1
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 7.2e-48 194.1 166 63.9
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.2e-47 193.4 139 66.2
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 1.2e-47 193.4 138 70.3
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 2.7e-47 192.2 127 77.2
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 7.9e-47 190.7 139 69.1
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 7.9e-47 190.7 139 66.9
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 1.0e-46 190.3 139 65.5
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 1.0e-46 190.3 139 68.3
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 1.8e-46 189.5 141 70.2
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 2.3e-46 189.1 139 64.7
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.0e-46 188.7 140 70.7
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 5.7e-45 184.5 101 96.0
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 9.7e-45 183.7 140 64.3
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 2.2e-44 182.6 142 64.1
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 4.1e-43 178.3 120 73.3
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 6.9e-43 177.6 121 71.9
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.2e-42 176.8 120 75.0
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 3.4e-42 175.3 120 74.2
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 4.5e-42 174.9 194 50.0
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 4.5e-42 174.9 108 79.6
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 1.3e-41 173.3 120 71.7
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 2.9e-41 172.2 112 74.1
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 5.0e-41 171.4 145 62.8
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.1e-40 170.2 121 67.8
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 2.1e-39 166.0 102 77.5
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 1.4e-38 163.3 114 70.2
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.8e-35 152.9 139 55.4
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.6e-34 149.1 129 64.3
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 1.0e-33 147.1 138 53.6
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 2.7e-31 139.0 121 60.3
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 2.3e-30 136.0 86 74.4
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 5.7e-29 131.3 101 68.3
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 2.8e-28 129.0 132 53.0
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 9.1e-27 124.0 140 50.0
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 5.9e-26 121.3 76 75.0
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 3.8e-25 118.6 85 65.9
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 5.5e-24 114.8 70 78.6
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 2.7e-23 112.5 70 74.3
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 3.6e-23 112.1 67 76.1
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 8.0e-23 110.9 100 64.0
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 1.0e-22 110.5 111 58.6
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 4.0e-22 108.6 118 49.2
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 3.4e-21 105.5 72 72.2
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 7.5e-21 104.4 80 62.5
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 1.0e-17 94.0 145 39.3
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.7e-17 93.2 62 71.0
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 1.8e-14 83.2 45 82.2
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.4e-13 79.0 45 80.0
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.7e-12 76.6 124 36.3
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 1.1e-11 73.9 163 36.2
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 1.5e-08 63.5 33 84.8
Actinidia19316 Actinidia chinensis HOM05D004647 ORTHO05D005349 8.9e-06 54.3 43 69.8


User provided reference genes

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