Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_37667 Sequoiadendron giganteum HOM05D002024 ORTHO05D007288 5.6e-217 757.3 375 100.0
TAR627G0588 Trochodendron aralioides HOM05D002024 ORTHO05D007288 1.2e-110 404.1 344 61.3
Ciclev10014176m.g Citrus clementina HOM05D002024 ORTHO05D007288 4.3e-108 395.6 341 62.2
Sed0008958 Sechium edule HOM05D002024 ORTHO05D007288 1.6e-107 393.7 341 59.2
Cpa.g.sc87.78 Carica papaya HOM05D002024 ORTHO05D007288 3.6e-107 392.5 339 61.9
Manes.12G066500 Manihot esculenta HOM05D002024 ORTHO05D007288 4.7e-107 392.1 338 60.9
FvH4_6g43150 Fragaria vesca HOM05D002024 ORTHO05D007288 4.0e-106 389.0 344 60.8
FAN05G4210 Fragaria x ananassa HOM05D002024 ORTHO05D007288 5.2e-106 388.7 345 61.2
Actinidia27264 Actinidia chinensis HOM05D002024 ORTHO05D007288 8.9e-106 387.9 343 58.9
MBI18_g03588_MAGBIO Magnolia biondii HOM05D002024 ORTHO05D007288 1.2e-105 387.5 341 61.0
CDE05G2902 Ceratophyllum demersum HOM05D002024 ORTHO05D007288 1.5e-105 387.1 359 57.9
RcHm_v2.0_Chr2g0159251 Rosa chinensis HOM05D002024 ORTHO05D007288 2.6e-105 386.3 342 60.5
MD09G1109200 Malus domestica HOM05D002024 ORTHO05D007288 3.4e-105 386.0 338 59.8
QL08p033036 Quercus lobata HOM05D002024 ORTHO05D007288 4.4e-105 385.6 348 58.3
TWI36G0154 Tripterygium wilfordii HOM05D002024 ORTHO05D007288 5.8e-105 385.2 340 60.6
CANSAT64G1657 Cannabis sativa HOM05D002024 ORTHO05D007288 9.9e-105 384.4 335 59.4
CsaV3_7G003570 Cucumis sativus L. HOM05D002024 ORTHO05D007288 1.7e-104 383.6 342 59.4
Eucgr.A01124 Eucalyptus grandis HOM05D002024 ORTHO05D007288 8.4e-104 381.3 350 57.4
Rhsim06G0162700 Rhododendron simsii HOM05D002024 ORTHO05D007288 1.1e-103 380.9 339 59.9
vmacro12202 Vaccinium macrocarpon HOM05D002024 ORTHO05D007288 1.1e-103 380.9 340 58.8
CSS0021724 Camellia sinensis var. sinensis HOM05D002024 ORTHO05D007288 1.4e-103 380.6 350 57.7
Potri.002G229000 Populus trichocarpa HOM05D002024 ORTHO05D007288 1.4e-103 380.6 343 58.0
Dinv05430 Davidia involucrata HOM05D002024 ORTHO05D007288 2.4e-103 379.8 343 57.7
ATR0794G134 Amborella trichopoda HOM05D002024 ORTHO05D007288 3.2e-103 379.4 343 58.3
Glyma.06G305900 Glycine max HOM05D002024 ORTHO05D007288 4.2e-103 379.0 335 60.3
ClCG02G001940 Citrullus lanatus HOM05D002024 ORTHO05D007288 7.1e-103 378.3 351 58.7
Cc05_g04580 Coffea canephora HOM05D002024 ORTHO05D007288 7.1e-103 378.3 344 59.0
FAN14G2536 Fragaria x ananassa HOM05D002024 ORTHO05D007288 7.1e-103 378.3 361 57.9
Hma1.2p1_0249F.1_g102286 Hydrangea macrophylla HOM05D002024 ORTHO05D007288 7.1e-103 378.3 338 58.6
Medtr4g048230 Medicago truncatula HOM05D002024 ORTHO05D007288 7.1e-103 378.3 336 58.6
Sed0017029 Sechium edule HOM05D002024 ORTHO05D007288 9.3e-103 377.9 341 57.8
GSVIVG01030425001 Vitis vinifera HOM05D002024 ORTHO05D007288 1.6e-102 377.1 339 60.8
MELO3C018818.2 Cucumis melo HOM05D002024 ORTHO05D007288 2.7e-102 376.3 351 58.4
EL10Ac9g20670 Beta vulgaris HOM05D002024 ORTHO05D007288 4.6e-102 375.6 344 57.0
Psat7g157200 Pisum sativum HOM05D002024 ORTHO05D007288 4.6e-102 375.6 333 59.2
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 4.6e-102 375.6 345 57.7
CiPaw.04G116100 Carya illinoinensis HOM05D002024 ORTHO05D007288 6.0e-102 375.2 348 58.0
Nn1g03510 Nelumbo nucifera HOM05D002024 ORTHO05D007288 6.0e-102 375.2 344 57.3
Zm00001eb322610 Zea mays HOM05D002024 ORTHO05D007288 7.8e-102 374.8 344 58.1
CAN.G1740.3 Capsicum annuum HOM05D002024 ORTHO05D007288 1.0e-101 374.4 341 57.5
Sc06g0009580 Simmondsia chinensis HOM05D002024 ORTHO05D007288 1.7e-101 373.6 343 58.0
Sabra02G0175000 Salix brachista HOM05D002024 ORTHO05D007288 3.9e-101 372.5 343 57.1
TPR.G4605 Trifolium pratense HOM05D002024 ORTHO05D007288 3.9e-101 372.5 336 58.6
Gohir.D04G189200 Gossypium hirsutum HOM05D002024 ORTHO05D007288 5.1e-101 372.1 351 55.3
Gorai.012G184500 Gossypium raimondii HOM05D002024 ORTHO05D007288 5.1e-101 372.1 351 55.3
Os07g0513100 Oryza sativa ssp. japonica HOM05D002024 ORTHO05D007288 6.6e-101 371.7 340 57.1
Pp3c18_1700 Physcomitrium patens HOM05D002024 ORTHO05D007288 6.6e-101 371.7 381 51.7
VMungo1127G2134 Vigna mungo HOM05D002024 ORTHO05D007288 6.6e-101 371.7 338 60.4
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 1.1e-100 370.9 347 57.1
FAN09G4217 Fragaria x ananassa HOM05D002024 ORTHO05D007288 1.1e-100 370.9 338 59.5
PGR042G3011 Punica granatum HOM05D002024 ORTHO05D007288 1.9e-100 370.2 343 56.0
AUR62025026 Chenopodium quinoa HOM05D002024 ORTHO05D007288 3.3e-100 369.4 339 58.4
Aa31LG5G4860 Aethionema arabicum HOM05D002024 ORTHO05D007288 1.3e-99 367.5 340 56.2
Lj3g0021786 Lotus japonicus HOM05D002024 ORTHO05D007288 1.6e-99 367.1 336 60.1
CARHR126240 Cardamine hirsuta HOM05D002024 ORTHO05D007288 3.6e-99 365.9 342 55.8
Sopen07g025960 Solanum pennellii HOM05D002024 ORTHO05D007288 4.8e-99 365.5 339 56.9
Phvul.011G103500 Phaseolus vulgaris HOM05D002024 ORTHO05D007288 1.4e-98 364.0 336 60.1
Aqoxy1G02138 Aquilegia oxysepala HOM05D002024 ORTHO05D007288 1.8e-98 363.6 343 58.0
Oeu019888.4 Olea europaea HOM05D002024 ORTHO05D007288 2.4e-98 363.2 351 56.1
THA.LOC104826151 Tarenaya hassleriana HOM05D002024 ORTHO05D007288 2.4e-98 363.2 339 56.3
PSO675G1279 Papaver somniferum HOM05D002024 ORTHO05D007288 4.0e-98 362.5 344 56.7
AT2G32415 Arabidopsis thaliana HOM05D002024 ORTHO05D007288 6.9e-98 361.7 341 53.4
Thhalv10016228m.g Eutrema salsugineum HOM05D002024 ORTHO05D007288 6.9e-98 361.7 342 55.6
BraA05t20260Z Brassica rapa HOM05D002024 ORTHO05D007288 9.0e-98 361.3 340 54.7
Sp4g14790 Schrenkiella parvula HOM05D002024 ORTHO05D007288 9.0e-98 361.3 343 55.4
Hund06720 Selenicereus undatus HOM05D002024 ORTHO05D007288 9.0e-98 361.3 344 54.9
AL4G27810 Arabidopsis lyrata HOM05D002024 ORTHO05D007288 1.2e-97 360.9 341 53.4
HanXRQChr16g0504911 Helianthus annuus HOM05D002024 ORTHO05D007288 1.2e-97 360.9 338 55.6
Nitab4.5_0002137g0070 Nicotiana tabacum HOM05D002024 ORTHO05D007288 1.2e-97 360.9 359 54.6
BcaC02g11322 Brassica carinata HOM05D002024 ORTHO05D007288 1.5e-97 360.5 346 55.5
C04p17230 Brassica napus HOM05D002024 ORTHO05D007288 1.5e-97 360.5 346 55.5
BolC4t23275H Brassica oleracea HOM05D002024 ORTHO05D007288 1.5e-97 360.5 346 55.5
FAN02G4513 Fragaria x ananassa HOM05D002024 ORTHO05D007288 2.6e-97 359.8 344 58.1
A05p13190 Brassica napus HOM05D002024 ORTHO05D007288 3.4e-97 359.4 341 55.1
Ca_12394_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 4.4e-97 359.0 336 58.6
Ca_30385_v3 Cicer arietinum L. HOM05D002024 ORTHO05D007288 4.4e-97 359.0 336 58.6
arahy.Tifrunner.gnm1.ann1.3TL5KL Arachis hypogaea HOM05D002024 ORTHO05D007288 1.7e-96 357.1 336 56.8
Carub.0004s1377 Capsella rubella HOM05D002024 ORTHO05D007288 2.2e-96 356.7 342 54.4
PSO541G4901 Papaver somniferum HOM05D002024 ORTHO05D007288 3.8e-96 355.9 343 56.3
Lsat_1_v5_gn_7_92221 Lactuca sativa HOM05D002024 ORTHO05D007288 6.4e-96 355.1 339 55.2
Migut.M00437 Erythranthe guttata HOM05D002024 ORTHO05D007288 8.4e-96 354.8 351 55.3
BcaB06g28594 Brassica carinata HOM05D002024 ORTHO05D007288 1.1e-95 354.4 339 53.4
Haze_12862 Corylus avellana HOM05D002024 ORTHO05D007288 1.1e-95 354.4 336 57.1
Mapoly0006s0210 Marchantia polymorpha HOM05D002024 ORTHO05D007288 9.3e-95 351.3 350 52.3
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 1.2e-94 350.9 338 53.8
BolC4t27671H Brassica oleracea HOM05D002024 ORTHO05D007288 2.1e-94 350.1 331 55.0
arahy.Tifrunner.gnm1.ann1.FW4LSX Arachis hypogaea HOM05D002024 ORTHO05D007288 4.6e-94 349.0 336 56.5
BcaC02g07923 Brassica carinata HOM05D002024 ORTHO05D007288 6.6e-93 345.1 338 53.3
C04p61920 Brassica napus HOM05D002024 ORTHO05D007288 6.6e-93 345.1 338 53.3
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 6.6e-93 345.1 338 53.6
SalBow7G2680 Salvia bowleyana HOM05D002024 ORTHO05D007288 3.6e-91 339.3 291 60.1
Actinidia09716 Actinidia chinensis HOM05D002024 ORTHO05D007288 4.5e-89 332.4 326 53.4
Solyc07g052340.4 Solanum lycopersicum HOM05D002024 ORTHO05D007288 8.4e-88 328.2 219 68.5
Prupe.3G217000 Prunus persica HOM05D002024 ORTHO05D007288 2.3e-85 320.1 340 52.9
Gohir.A04G144700 Gossypium hirsutum HOM05D002024 ORTHO05D007288 3.0e-85 319.7 328 51.5
Peaxi162Scf00007g00832 Petunia axillaris HOM05D002024 ORTHO05D007288 2.6e-81 306.6 341 51.9
CBR_g39322 Chara braunii HOM05D002024 ORTHO05D007288 3.4e-81 306.2 384 46.1
Dinv39713 Davidia involucrata HOM05D002024 ORTHO05D007288 7.6e-81 305.1 326 51.5
Lj8A125T72 Lonicera japonica HOM05D002024 ORTHO05D007288 6.7e-77 292.0 342 51.5
ECA236G2373 Erigeron canadensis HOM05D002024 ORTHO05D007288 7.6e-73 278.5 339 48.1
Lalb_Chr19g0135891 Lupinus albus HOM05D002024 ORTHO05D007288 2.9e-72 276.6 321 48.3
COL.COLO4_27729 Corchorus olitorius HOM05D002024 ORTHO05D007288 1.9e-71 273.9 326 48.8
Nitab4.5_0004417g0080 Nicotiana tabacum HOM05D002024 ORTHO05D007288 2.5e-71 273.5 341 47.5
unitig_899.g15271 Utricularia gibba HOM05D002024 ORTHO05D007288 1.2e-70 271.2 322 48.4
ECA238G0106 Erigeron canadensis HOM05D000014 ORTHO05D007288 2.9e-64 250.0 336 43.8
HPP92_014132 Vanilla planifolia HOM05D002024 ORTHO05D007288 5.3e-58 229.2 147 70.7
DCAR_019765 Daucus carota HOM05D002024 ORTHO05D007288 1.7e-51 207.6 327 38.8
Glyma.12G098667 Glycine max HOM05D002024 ORTHO05D007288 1.0e-48 198.4 215 53.5
Cre03.g145767 Chlamydomonas reinhardtii HOM05D002024 ORTHO05D007288 7.0e-42 175.6 147 54.4
Cre10.g451300 Chlamydomonas reinhardtii HOM05D002024 ORTHO05D007288 2.3e-29 134.0 192 36.5
SGA_v2.0_scaffold70G23397 Striga asiatica HOM05D002024 ORTHO05D007288 8.8e-29 132.1 180 46.1
AagrBONN_evm.TU.Sc2ySwM_117.2157 Anthoceros agrestis HOM05D002024 ORTHO05D007288 3.6e-22 110.2 190 38.9
A10p12870 Brassica napus HOM05D002024 ORTHO05D007288 9.2e-18 95.5 270 31.1
BcaC04g19913 Brassica carinata HOM05D002024 ORTHO05D007288 1.0e-08 65.5 122 36.9
C09p47020 Brassica napus HOM05D002024 ORTHO05D007288 2.5e-07 60.8 223 28.3
BolC9t57552H Brassica oleracea HOM05D002024 ORTHO05D007288 2.5e-07 60.8 224 27.7


User provided reference genes

Program Settings