Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_34493 Sequoiadendron giganteum HOM05D000104 ORTHO05D022884 3.2e-159 565.1 295 100.0
Atru.chr2.1068 Acer truncatum HOM05D000104 ORTHO05D006397 5.3e-37 159.1 282 37.6
Ciclev10030509m.g Citrus clementina HOM05D000104 ORTHO05D006397 1.2e-36 157.9 280 38.9
Nn1g02977 Nelumbo nucifera HOM05D000104 ORTHO05D006397 2.6e-36 156.8 282 37.9
Sc09g0001860 Simmondsia chinensis HOM05D000104 ORTHO05D006397 8.5e-35 151.8 283 37.1
Sabra19G0033000 Salix brachista HOM05D000104 ORTHO05D006397 1.1e-34 151.4 280 41.1
Dinv12942 Davidia involucrata HOM05D000104 ORTHO05D006397 1.9e-34 150.6 287 35.2
MD00G1149200 Malus domestica HOM05D000104 ORTHO05D006397 1.9e-34 150.6 278 36.7
Manes.09G147000 Manihot esculenta HOM05D000104 ORTHO05D006397 2.5e-34 150.2 281 34.9
Peaxi162Scf00373g01415 Petunia axillaris HOM05D000104 ORTHO05D006397 4.2e-34 149.4 287 35.9
Potri.013G048500 Populus trichocarpa HOM05D000104 ORTHO05D006397 5.5e-34 149.1 280 39.3
Psat6g144360 Pisum sativum HOM05D000104 ORTHO05D006397 7.2e-34 148.7 282 34.0
Ca_10025_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006397 1.2e-33 147.9 280 35.7
ATR0787G043 Amborella trichopoda HOM05D000104 ORTHO05D006397 2.1e-33 147.1 282 35.8
TPR.G26620 Trifolium pratense HOM05D000104 ORTHO05D006397 2.1e-33 147.1 280 34.3
GSVIVG01023393001 Vitis vinifera HOM05D000104 ORTHO05D006397 2.1e-33 147.1 280 35.0
Cc09_g02930 Coffea canephora HOM05D000104 ORTHO05D006397 3.6e-33 146.4 285 36.1
Cpa.g.sc51.15 Carica papaya HOM05D000104 ORTHO05D006397 4.7e-33 146.0 283 37.5
ClCG11G010390 Citrullus lanatus HOM05D000104 ORTHO05D006397 4.7e-33 146.0 284 36.3
Nitab4.5_0002088g0030 Nicotiana tabacum HOM05D000104 ORTHO05D006397 6.1e-33 145.6 281 35.2
Prupe.6G351600 Prunus persica HOM05D000104 ORTHO05D006397 6.1e-33 145.6 280 35.4
Nitab4.5_0000061g0050 Nicotiana tabacum HOM05D000104 ORTHO05D006397 7.9e-33 145.2 281 36.3
Thecc.05G267600 Theobroma cacao HOM05D000104 ORTHO05D006397 7.9e-33 145.2 285 36.1
Lj5g0000218 Lotus japonicus HOM05D000104 ORTHO05D006397 1.0e-32 144.8 282 38.3
HPP92_015192 Vanilla planifolia HOM05D000104 ORTHO05D006397 1.0e-32 144.8 283 37.8
arahy.Tifrunner.gnm1.ann1.21AGFE Arachis hypogaea HOM05D000104 ORTHO05D006397 1.8e-32 144.1 280 38.2
arahy.Tifrunner.gnm1.ann1.N8MZL6 Arachis hypogaea HOM05D000104 ORTHO05D006397 1.8e-32 144.1 280 38.2
Lalb_Chr06g0168221 Lupinus albus HOM05D000104 ORTHO05D006397 1.8e-32 144.1 281 35.6
Rhsim09G0133300 Rhododendron simsii HOM05D000104 ORTHO05D006397 1.8e-32 144.1 282 34.8
Hund07179 Selenicereus undatus HOM05D000104 ORTHO05D006397 1.8e-32 144.1 285 35.4
ECA238G3223 Erigeron canadensis HOM05D000104 ORTHO05D006397 2.3e-32 143.7 284 40.1
Phvul.L001951 Phaseolus vulgaris HOM05D000104 ORTHO05D006397 2.3e-32 143.7 282 35.8
vmacro10381 Vaccinium macrocarpon HOM05D000104 ORTHO05D006397 2.3e-32 143.7 304 34.5
VMungo0720G0899 Vigna mungo HOM05D000104 ORTHO05D006397 3.0e-32 143.3 285 36.8
COL.COLO4_15520 Corchorus olitorius HOM05D000104 ORTHO05D006397 3.9e-32 142.9 278 35.3
MELO3C008639.2 Cucumis melo HOM05D000104 ORTHO05D006397 3.9e-32 142.9 281 35.9
HanXRQChr11g0327241 Helianthus annuus HOM05D000104 ORTHO05D006397 3.9e-32 142.9 283 38.5
Sed0024552 Sechium edule HOM05D000104 ORTHO05D006397 3.9e-32 142.9 282 37.2
Sopen04g020860 Solanum pennellii HOM05D000104 ORTHO05D006397 3.9e-32 142.9 280 34.3
CsaV3_2G009970 Cucumis sativus L. HOM05D000104 ORTHO05D006397 5.1e-32 142.5 281 35.9
Duzib128G0174 Durio zibethinus HOM05D000104 ORTHO05D006397 5.1e-32 142.5 280 36.1
MD04G1232200 Malus domestica HOM05D000104 ORTHO05D006397 5.1e-32 142.5 278 36.0
PGR004G1676 Punica granatum HOM05D000104 ORTHO05D006397 5.1e-32 142.5 282 34.0
RcHm_v2.0_Chr3g0449401 Rosa chinensis HOM05D000104 ORTHO05D006397 5.1e-32 142.5 281 35.2
CSS0004215 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006397 6.7e-32 142.1 282 34.8
TWI60G0140 Tripterygium wilfordii HOM05D000104 ORTHO05D006397 6.7e-32 142.1 290 35.9
Aa31sc449G60 Aethionema arabicum HOM05D000104 ORTHO05D006397 8.8e-32 141.7 284 35.2
Solyc04g050150.4 Solanum lycopersicum HOM05D000104 ORTHO05D006397 8.8e-32 141.7 281 33.8
Migut.F01812 Erythranthe guttata HOM05D000104 ORTHO05D006397 1.1e-31 141.4 284 34.5
Lj2C45G10 Lonicera japonica HOM05D000104 ORTHO05D006397 1.1e-31 141.4 290 38.3
Glyma.20G227200 Glycine max HOM05D000104 ORTHO05D006397 1.5e-31 141.0 282 36.9
Gohir.D11G255300 Gossypium hirsutum HOM05D000104 ORTHO05D006397 1.5e-31 141.0 286 34.6
Gorai.007G273900 Gossypium raimondii HOM05D000104 ORTHO05D006397 1.5e-31 141.0 286 34.6
PSO764G0152 Papaver somniferum HOM05D000104 ORTHO05D006397 2.0e-31 140.6 288 32.6
Gohir.A11G245400 Gossypium hirsutum HOM05D000104 ORTHO05D006397 3.3e-31 139.8 286 34.3
Actinidia34760 Actinidia chinensis HOM05D000104 ORTHO05D006397 1.7e-30 137.5 289 34.9
CANSAT54G2768 Cannabis sativa HOM05D000104 ORTHO05D006397 2.2e-30 137.1 280 40.4
Medtr1g080420 Medicago truncatula HOM05D000104 ORTHO05D006397 2.8e-30 136.7 282 33.3
FAN05G2560 Fragaria x ananassa HOM05D000104 ORTHO05D006397 3.7e-30 136.3 285 34.4
Ah.02g118350 Amaranthus hybridus HOM05D000104 ORTHO05D006397 4.8e-30 136.0 293 33.8
SGA_v2.0_scaffold62G21465 Striga asiatica HOM05D000104 ORTHO05D006397 4.8e-30 136.0 135 54.1
FAN02G0967 Fragaria x ananassa HOM05D000104 ORTHO05D006397 6.3e-30 135.6 293 34.1
TAR362G0360 Trochodendron aralioides HOM05D000104 ORTHO05D006397 6.3e-30 135.6 135 54.1
FAN05G1722 Fragaria x ananassa HOM05D000104 ORTHO05D006397 8.2e-30 135.2 285 34.4
FAN09G4154 Fragaria x ananassa HOM05D000104 ORTHO05D006397 8.2e-30 135.2 285 34.4
Sp1g07260 Schrenkiella parvula HOM05D000104 ORTHO05D006397 8.2e-30 135.2 280 33.6
AUR62006982 Chenopodium quinoa HOM05D000104 ORTHO05D006397 1.4e-29 134.4 283 33.9
unitig_37.g12285 Utricularia gibba HOM05D000104 ORTHO05D006397 1.4e-29 134.4 134 55.2
Glyma.10G165000 Glycine max HOM05D000104 ORTHO05D006397 1.8e-29 134.0 282 36.2
AL1G19030 Arabidopsis lyrata HOM05D000104 ORTHO05D006397 2.4e-29 133.7 283 33.6
CARHR008510 Cardamine hirsuta HOM05D000104 ORTHO05D006397 2.4e-29 133.7 286 34.3
CiPaw.08G118700 Carya illinoinensis HOM05D000104 ORTHO05D006397 2.4e-29 133.7 287 34.1
Thhalv10006555m.g Eutrema salsugineum HOM05D000104 ORTHO05D006397 2.4e-29 133.7 281 33.8
FAN14G4089 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.4e-29 133.7 283 33.6
FAN14G5045 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.4e-29 133.7 283 33.6
THA.LOC104805785 Tarenaya hassleriana HOM05D000104 ORTHO05D006397 3.1e-29 133.3 281 33.5
AT1G08600 Arabidopsis thaliana HOM05D000104 ORTHO05D006397 4.1e-29 132.9 284 32.7
FvH4_6g01581 Fragaria vesca HOM05D000104 ORTHO05D006397 4.1e-29 132.9 280 33.9
Actinidia38932 Actinidia chinensis HOM05D000104 ORTHO05D006397 5.3e-29 132.5 289 33.2
Aqoxy5G00143 Aquilegia oxysepala HOM05D000104 ORTHO05D006397 5.3e-29 132.5 290 33.1
MSTRG.27435 Avicennia marina HOM05D000104 ORTHO05D006397 5.3e-29 132.5 135 54.8
Migut.F02058 Erythranthe guttata HOM05D000104 ORTHO05D006397 5.3e-29 132.5 133 54.9
Carub.0001s0796 Capsella rubella HOM05D000104 ORTHO05D006397 7.0e-29 132.1 280 32.5
DCAR_028378 Daucus carota HOM05D000104 ORTHO05D006397 7.0e-29 132.1 292 34.6
Zm00001eb046650 Zea mays HOM05D000104 ORTHO05D006397 1.2e-28 131.3 285 34.0
CDE02G4509 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 1.5e-28 131.0 133 51.9
SalBow1G3403 Salvia bowleyana HOM05D000104 ORTHO05D006397 1.5e-28 131.0 133 54.9
AUR62000629 Chenopodium quinoa HOM05D000104 ORTHO05D006397 2.0e-28 130.6 287 32.8
Lsat_1_v5_gn_2_15881 Lactuca sativa HOM05D000104 ORTHO05D006397 1.0e-27 128.3 280 38.6
BraA06t23766Z Brassica rapa HOM05D000329 ORTHO05D006397 2.2e-27 127.1 284 35.9
Eucgr.H04218 Eucalyptus grandis HOM05D000104 ORTHO05D006397 2.2e-27 127.1 283 34.6
BcaB07g34102 Brassica carinata HOM05D000104 ORTHO05D006397 2.9e-27 126.7 136 52.2
A06p05580 Brassica napus HOM05D000329 ORTHO05D006397 2.9e-27 126.7 284 35.9
EL10Ac4g09754 Beta vulgaris HOM05D000104 ORTHO05D006397 3.8e-27 126.3 284 33.1
Haze_04401 Corylus avellana HOM05D000104 ORTHO05D006397 3.8e-27 126.3 300 33.0
C05p06690 Brassica napus HOM05D000104 ORTHO05D006397 1.6e-25 120.9 134 51.5
BolC5t29429H Brassica oleracea HOM05D000104 ORTHO05D006397 1.6e-25 120.9 134 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2543 Anthoceros agrestis HOM05D000104 ORTHO05D006397 1.3e-22 111.3 137 48.2
Potri.019G021500 Populus trichocarpa HOM05D000104 ORTHO05D006397 1.3e-22 111.3 282 34.4
Mapoly0058s0081 Marchantia polymorpha HOM05D000104 ORTHO05D006397 2.0e-20 104.0 297 30.3
Pp3c14_22150 Physcomitrium patens HOM05D000104 ORTHO05D006397 7.7e-20 102.1 305 30.2
Oeu051341.1 Olea europaea HOM05D000104 ORTHO05D006397 1.7e-19 100.9 65 75.4
Oeu051342.1 Olea europaea HOM05D000104 ORTHO05D006397 1.7e-19 100.9 65 75.4
Hma1.2p1_1336F.1_g276430 Hydrangea macrophylla HOM05D000104 ORTHO05D006397 5.0e-19 99.4 65 73.8
CDE09G0114 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 1.5e-18 97.8 56 82.1
QL03p029602 Quercus lobata HOM05D000104 ORTHO05D006397 2.5e-18 97.1 115 49.6
C08p49920 Brassica napus HOM05D000104 ORTHO05D006397 7.2e-18 95.5 136 43.4
BolC8t52520H Brassica oleracea HOM05D000104 ORTHO05D006397 7.2e-18 95.5 136 43.4
Os10g0457700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006397 1.2e-17 94.7 64 73.4
BcaC07g41935 Brassica carinata HOM05D000104 ORTHO05D006397 1.7e-14 84.3 59 67.8
SMO115G0122 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 8.3e-14 82.0 271 27.7
CBR_g50040 Chara braunii HOM05D000104 ORTHO05D006397 1.6e-12 77.8 71 56.3
CDE09G0386 Ceratophyllum demersum HOM05D000104 ORTHO05D028698 4.0e-08 63.2 177 26.6
MBI02_g17149_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D022884 5.2e-08 62.8 38 78.9
MBI19_g46766_MAGBIO Magnolia biondii HOM05D000116 ORTHO05D022884 4.4e-07 59.7 36 77.8
AagrBONN_evm.TU.Sc2ySwM_228.1653 Anthoceros agrestis HOM05D000104 ORTHO05D006311 7.5e-07 58.9 72 45.8
unitig_46.g18342 Utricularia gibba HOM05D000104 ORTHO05D008568 7.5e-07 58.9 106 31.1
MBI14_g09785_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D022884 9.8e-07 58.5 37 75.7
TWI12G0577 Tripterygium wilfordii HOM05D000104 ORTHO05D008568 9.8e-07 58.5 106 32.1
CDE08G1277 Ceratophyllum demersum HOM05D000104 ORTHO05D006311 1.3e-06 58.2 65 47.7
Cre03.g201850 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D006311 1.3e-06 58.2 61 49.2
SalBow6G2605 Salvia bowleyana HOM05D000104 ORTHO05D008568 1.3e-06 58.2 104 33.7
Haze_26621 Corylus avellana HOM05D000104 ORTHO05D006397 1.7e-06 57.8 70 45.7
Thhalv10022523m.g Eutrema salsugineum HOM05D000104 ORTHO05D008568 1.7e-06 57.8 98 34.7
CiPaw.05G006100 Carya illinoinensis HOM05D000104 ORTHO05D006311 2.2e-06 57.4 65 47.7
Lj4g0008367 Lotus japonicus HOM05D000104 ORTHO05D006071 2.2e-06 57.4 58 50.0
Rhsim05G0083600 Rhododendron simsii HOM05D000104 ORTHO05D006311 2.2e-06 57.4 72 43.1
SMO137G0183 Selaginella moellendorffii HOM05D000104 ORTHO05D006311 2.2e-06 57.4 72 44.4
Thecc.02G099700 Theobroma cacao HOM05D000104 ORTHO05D006311 2.2e-06 57.4 72 45.8
Cfa023286 Carpinus fangiana HOM05D000104 ORTHO05D006311 2.8e-06 57.0 63 46.0
Duzib052G0677 Durio zibethinus HOM05D000104 ORTHO05D006311 2.8e-06 57.0 72 45.8
Migut.N02212 Erythranthe guttata HOM05D000104 ORTHO05D008568 2.8e-06 57.0 136 30.9
Psat7g045440 Pisum sativum HOM05D000104 ORTHO05D006071 2.8e-06 57.0 58 50.0
SEGI_26873 Sequoiadendron giganteum HOM05D000208 ORTHO05D022884 2.8e-06 57.0 41 68.3
Aqoxy5G01249 Aquilegia oxysepala HOM05D000104 ORTHO05D006311 3.7e-06 56.6 127 29.9
Aa31LG8G6000 Aethionema arabicum HOM05D000104 ORTHO05D006311 4.8e-06 56.2 107 34.6
arahy.Tifrunner.gnm1.ann1.DAD8TC Arachis hypogaea HOM05D000104 ORTHO05D006071 4.8e-06 56.2 58 48.3
CAN.G46.36 Capsicum annuum HOM05D000104 ORTHO05D006311 4.8e-06 56.2 76 42.1
Cc01_g18180 Coffea canephora HOM05D000104 ORTHO05D008568 4.8e-06 56.2 88 34.1
Prupe.8G123600 Prunus persica HOM05D000104 ORTHO05D006311 4.8e-06 56.2 104 34.6
Solyc04g056410.3 Solanum lycopersicum HOM05D000104 ORTHO05D006311 4.8e-06 56.2 76 42.1
Sopen04g025310 Solanum pennellii HOM05D000104 ORTHO05D006311 4.8e-06 56.2 76 42.1
Actinidia14083 Actinidia chinensis HOM05D000104 ORTHO05D006071 6.3e-06 55.8 58 46.6
AT3G19210 Arabidopsis thaliana HOM05D000104 ORTHO05D006311 6.3e-06 55.8 106 34.9
Cpa.g.sc165.16 Carica papaya HOM05D000104 ORTHO05D008568 6.3e-06 55.8 88 35.2
Dinv23617 Davidia involucrata HOM05D000104 ORTHO05D006311 6.3e-06 55.8 72 43.1
Thhalv10020013m.g Eutrema salsugineum HOM05D000104 ORTHO05D006311 6.3e-06 55.8 123 33.3
Gohir.A13G039700 Gossypium hirsutum HOM05D000104 ORTHO05D006311 6.3e-06 55.8 72 44.4
Gohir.D13G038400 Gossypium hirsutum HOM05D000104 ORTHO05D006311 6.3e-06 55.8 72 44.4
Gorai.013G043100 Gossypium raimondii HOM05D000104 ORTHO05D006311 6.3e-06 55.8 72 44.4
Phvul.002G054300 Phaseolus vulgaris HOM05D000104 ORTHO05D006311 6.3e-06 55.8 72 43.1
TWI31G1026 Tripterygium wilfordii HOM05D000104 ORTHO05D006311 6.3e-06 55.8 65 46.2
COL.COLO4_32665 Corchorus olitorius HOM05D000104 ORTHO05D006311 8.3e-06 55.5 72 44.4
MELO3C019510.2 Cucumis melo HOM05D000104 ORTHO05D006311 8.3e-06 55.5 107 34.6
CsaV3_3G018560 Cucumis sativus L. HOM05D000104 ORTHO05D006311 8.3e-06 55.5 107 34.6
SMO011G0002 Selaginella moellendorffii HOM05D000104 ORTHO05D008568 8.3e-06 55.5 88 36.4


User provided reference genes

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