Gene: Sopen04g025310

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g025310
  • Transcript Identifier Sopen04g025310.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 65928540-65941951 : positive

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g025310.1

Descriptions

  • Description Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination. | homolog of RAD54 (RAD54) | FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding | INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination | LOCATED IN: cellular_component unknown | EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole | CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal , DNA/RNA helicase, C-terminal , Helicase, superfamily 1/2, ATP-binding domain , SNF2-related | BEST Arabidopsis thaliana protein match is: switch 2 ., Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice), SNF2-related
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0071480
ISO
PLAZA Integrative Orthologycellular response to gamma radiation AT3G19210
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT3G19210
GO:0071248
ISO
PLAZA Integrative Orthologycellular response to metal ion AT3G19210
GO:0045003
ISO
PLAZA Integrative Orthologydouble-strand break repair via synthesis-dependent strand annealing AT3G19210
GO:0010332
ISO
PLAZA Integrative Orthologyresponse to gamma radiation AT3G19210
GO:0051701
ISO
PLAZA Integrative Orthologybiological process involved in interaction with host AT3G19210

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G19210

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
12.4.8.1.1 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad54-like group.chromatin remodeling factor (RAD54)