Gene: AT3G19210

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G19210
  • Transcript Identifier AT3G19210.1
  • Gene Type Coding gene
  • Location Chr3 : 6652799-6658876 : negative

Gene Family Information

  • ID HOM05D000104
  • #Genes/#Species 3097/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G19210.1
  • symbol RAD54
  • Alias ATRAD54,homolog of RAD54,CHR25
  • full_name homolog of RAD54
  • uniprot Q0PCS3

Descriptions

  • Description DNA repair/recombination protein
  • Computational description homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole, cultured cell; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G08600.2); Has 18387 Blast hits to 15591 proteins in 2067 species: Archae - 120; Bacteria - 5826; Metazoa - 3647; Fungi - 4163; Plants - 1557; Viruses - 140; Other Eukaryotes - 2934 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007131
IBA
Gene Ontologyreciprocal meiotic recombination1
GO:0051301
IEA
GOA Databasecell division
GO:0007049
IEA
GOA Databasecell cycle
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0045003
IDA, IMP
IBA
Gene Ontologydouble-strand break repair via synthesis-dependent strand annealing1 2
GO:0071248
IEP
Gene Ontologycellular response to metal ion3
GO:0051701
IPI
Gene Ontologybiological process involved in interaction with host4
GO:0071480
IEP
Gene Ontologycellular response to gamma radiation5
GO:0010332
IEP
Gene Ontologyresponse to gamma radiation5
GO:0000724
IMP
Gene Ontologydouble-strand break repair via homologous recombination5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070615
IEA
GOA Databasenucleosome-dependent ATPase activity
GO:0070615
IEA
InterPronucleosome-dependent ATPase activity
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0015616
IBA
Gene OntologyDNA translocase activity1
GO:0005515
IPI
Gene Ontologyprotein binding5
GO:0140658
IEA
Gene OntologyATPase-dependent chromatin remodeler activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR001650 Helicase, C-terminal
IPR000330 SNF2, N-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR038718 SNF2-like, N-terminal domain superfamily
Mapman id Description
12.4.8.1.1 Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad54-like group.chromatin remodeling factor (RAD54)