Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33020 Sequoiadendron giganteum HOM05D003132 ORTHO05D003736 2.8e-48 194.9 95 100.0
ECA238G0880 Erigeron canadensis HOM05D003132 ORTHO05D003736 2.2e-32 142.1 91 70.3
Dinv27388 Davidia involucrata HOM05D003132 ORTHO05D003736 6.3e-32 140.6 91 70.3
HanXRQChr14g0440811 Helianthus annuus HOM05D003132 ORTHO05D003736 8.2e-32 140.2 91 69.2
PSO170G1030 Papaver somniferum HOM05D003132 ORTHO05D003736 1.4e-31 139.4 91 70.3
DCAR_020428 Daucus carota HOM05D003132 ORTHO05D003736 1.8e-31 139.0 91 69.2
MBI03_g11133_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 1.8e-31 139.0 91 70.3
GSVIVG01008947001 Vitis vinifera HOM05D003132 ORTHO05D003736 2.4e-31 138.7 91 70.3
PSO017G5000 Papaver somniferum HOM05D003132 ORTHO05D003736 5.3e-31 137.5 91 69.2
Sc01g0001580 Simmondsia chinensis HOM05D003132 ORTHO05D003736 5.3e-31 137.5 91 68.1
Actinidia29433 Actinidia chinensis HOM05D003132 ORTHO05D003736 7.0e-31 137.1 91 69.2
Dinv26724 Davidia involucrata HOM05D003132 ORTHO05D003736 7.0e-31 137.1 91 69.2
Rhsim11G0064900 Rhododendron simsii HOM05D003132 ORTHO05D003736 7.0e-31 137.1 91 69.2
Nn1g08540 Nelumbo nucifera HOM05D003132 ORTHO05D003736 9.1e-31 136.7 91 69.2
SGA_v2.0_scaffold28G12034 Striga asiatica HOM05D003132 ORTHO05D003736 9.1e-31 136.7 91 70.3
Pp3c23_18370 Physcomitrium patens HOM05D003132 ORTHO05D003736 1.2e-30 136.3 91 70.3
ATR0171G023 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.6e-30 136.0 91 71.4
Lj7C306G6 Lonicera japonica HOM05D000316 ORTHO05D000374 2.0e-30 135.6 91 68.1
TAR628G0266 Trochodendron aralioides HOM05D003132 ORTHO05D003736 2.0e-30 135.6 91 69.2
vmacro00793 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 2.6e-30 135.2 91 68.1
CDE06G0428 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.3e-29 132.9 91 65.9
Migut.C01198 Erythranthe guttata HOM05D003132 ORTHO05D003736 1.3e-29 132.9 91 67.0
SalBow7G2329 Salvia bowleyana HOM05D003132 ORTHO05D003736 1.3e-29 132.9 91 67.0
SalBow7G4391 Salvia bowleyana HOM05D003132 ORTHO05D003736 1.3e-29 132.9 91 67.0
Hund20801 Selenicereus undatus HOM05D003132 ORTHO05D003736 1.7e-29 132.5 91 67.0
Peaxi162Scf00647g00129 Petunia axillaris HOM05D003132 ORTHO05D003736 2.9e-29 131.7 91 67.0
TAR624G0618 Trochodendron aralioides HOM05D003132 ORTHO05D003736 2.9e-29 131.7 87 71.3
SMO356G0397 Selaginella moellendorffii HOM05D003132 ORTHO05D003736 6.5e-29 130.6 91 68.1
Lsat_1_v5_gn_2_115101 Lactuca sativa HOM05D003132 ORTHO05D003736 1.5e-28 129.4 91 63.7
Atru.chr13.1311 Acer truncatum HOM05D003132 ORTHO05D003736 3.2e-28 128.3 91 69.2
AUR62023605 Chenopodium quinoa HOM05D003132 ORTHO05D003736 4.2e-28 127.9 91 62.6
Nitab4.5_0002247g0160 Nicotiana tabacum HOM05D003132 ORTHO05D003736 5.5e-28 127.5 91 65.9
CAN.G134.60 Capsicum annuum HOM05D003132 ORTHO05D003736 7.2e-28 127.1 91 64.8
PGSC0003DMG400027521 Solanum tuberosum HOM05D003132 ORTHO05D003736 7.2e-28 127.1 91 64.8
AUR62004688 Chenopodium quinoa HOM05D003132 ORTHO05D003736 9.4e-28 126.7 91 61.5
Mapoly0003s0258 Marchantia polymorpha HOM05D003132 ORTHO05D003736 9.4e-28 126.7 91 64.8
Sopen01g040690 Solanum pennellii HOM05D003132 ORTHO05D003736 9.4e-28 126.7 91 64.8
Solyc01g096990.4 Solanum lycopersicum HOM05D003132 ORTHO05D003736 2.7e-27 125.2 91 63.7
EL10Ac1g00043 Beta vulgaris HOM05D003132 ORTHO05D003736 3.6e-27 124.8 91 62.6
Cc00_g24650 Coffea canephora HOM05D003132 ORTHO05D003736 3.6e-27 124.8 87 66.7
ECA246G0273 Erigeron canadensis HOM05D003132 ORTHO05D003736 3.6e-27 124.8 91 61.5
Nitab4.5_0004014g0020 Nicotiana tabacum HOM05D003132 ORTHO05D003736 3.6e-27 124.8 91 63.7
Cpa.g.sc828.2 Carica papaya HOM05D003132 ORTHO05D003736 4.7e-27 124.4 91 67.0
Lj1g0008302 Lotus japonicus HOM05D003132 ORTHO05D003736 4.7e-27 124.4 91 65.9
Cfa015956 Carpinus fangiana HOM05D003132 ORTHO05D003736 6.1e-27 124.0 91 67.0
Psat5g133920 Pisum sativum HOM05D003132 ORTHO05D003736 6.1e-27 124.0 91 65.9
Potri.005G171500 Populus trichocarpa HOM05D003132 ORTHO05D003736 6.1e-27 124.0 91 67.0
THA.LOC104806806 Tarenaya hassleriana HOM05D003132 ORTHO05D003736 6.1e-27 124.0 91 67.0
TWI56G0630 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 8.0e-27 123.6 91 65.9
AL3G33220 Arabidopsis lyrata HOM05D003132 ORTHO05D003736 1.8e-26 122.5 91 64.8
Ciclev10001011m.g Citrus clementina HOM05D003132 ORTHO05D003736 1.8e-26 122.5 91 67.0
COL.COLO4_21818 Corchorus olitorius HOM05D003132 ORTHO05D003736 1.8e-26 122.5 91 67.0
Sp6g33990 Schrenkiella parvula HOM05D003132 ORTHO05D003736 1.8e-26 122.5 91 64.8
Ca_25763_v3 Cicer arietinum L. HOM05D003132 ORTHO05D003736 2.3e-26 122.1 91 63.7
MELO3C008519.2 Cucumis melo HOM05D003132 ORTHO05D003736 2.3e-26 122.1 91 63.7
TPR.G32950 Trifolium pratense HOM05D003132 ORTHO05D003736 2.3e-26 122.1 91 63.7
AT3G19770 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 3.0e-26 121.7 91 64.8
CARHR095280 Cardamine hirsuta HOM05D003132 ORTHO05D003736 3.0e-26 121.7 91 64.8
HanXRQChr15g0496671 Helianthus annuus HOM05D003132 ORTHO05D003736 3.0e-26 121.7 91 60.4
Lalb_Chr11g0065661 Lupinus albus HOM05D003132 ORTHO05D003736 3.0e-26 121.7 91 63.7
A10p27920 Brassica napus HOM05D003132 ORTHO05D003736 4.0e-26 121.3 91 63.7
BraA10t44841Z Brassica rapa HOM05D003132 ORTHO05D003736 4.0e-26 121.3 91 63.7
CiPaw.06G024400 Carya illinoinensis HOM05D003132 ORTHO05D003736 4.0e-26 121.3 91 64.8
Gohir.D06G041500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 4.0e-26 121.3 91 65.9
Gorai.010G046700 Gossypium raimondii HOM05D003132 ORTHO05D003736 4.0e-26 121.3 91 65.9
ClCG06G009880 Citrullus lanatus HOM05D003132 ORTHO05D003736 5.2e-26 120.9 91 62.6
Thecc.08G116200 Theobroma cacao HOM05D003132 ORTHO05D003736 5.2e-26 120.9 91 65.9
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 6.7e-26 120.6 91 63.7
BcaB08g37217 Brassica carinata HOM05D003132 ORTHO05D003736 8.8e-26 120.2 90 63.3
Gohir.A06G040500 Gossypium hirsutum HOM05D003132 ORTHO05D003736 1.2e-25 119.8 91 64.8
CSS0019182 Camellia sinensis var. sinensis HOM05D003132 ORTHO05D003736 1.5e-25 119.4 91 62.6
Carub.0003s1964 Capsella rubella HOM05D003132 ORTHO05D003736 1.5e-25 119.4 91 63.7
Oeu039582.2 Olea europaea HOM05D003132 ORTHO05D003736 1.5e-25 119.4 91 61.5
arahy.Tifrunner.gnm1.ann1.KS02B5 Arachis hypogaea HOM05D003132 ORTHO05D003736 2.0e-25 119.0 91 62.6
arahy.Tifrunner.gnm1.ann1.M9VU1N Arachis hypogaea HOM05D003132 ORTHO05D003736 2.0e-25 119.0 91 62.6
Thhalv10012815m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 2.0e-25 119.0 91 62.6
BcaB08g37215 Brassica carinata HOM05D003132 ORTHO05D003736 2.6e-25 118.6 91 61.5
C09p68030 Brassica napus HOM05D003132 ORTHO05D003736 2.6e-25 118.6 91 61.5
Os03g0262900 Oryza sativa ssp. japonica HOM05D003132 ORTHO05D003736 3.3e-25 118.2 81 67.9
Glyma.06G108200 Glycine max HOM05D003132 ORTHO05D003736 4.4e-25 117.9 91 62.6
MD00G1104300 Malus domestica HOM05D003132 ORTHO05D003736 4.4e-25 117.9 91 63.7
MD15G1358700 Malus domestica HOM05D003132 ORTHO05D003736 5.7e-25 117.5 91 63.7
Medtr3g073360 Medicago truncatula HOM05D003132 ORTHO05D003736 5.7e-25 117.5 91 62.6
QL12p035360 Quercus lobata HOM05D003132 ORTHO05D003736 5.7e-25 117.5 86 66.3
BcaB06g26045 Brassica carinata HOM05D003132 ORTHO05D003736 9.7e-25 116.7 78 67.9
BcaC05g28420 Brassica carinata HOM05D003132 ORTHO05D003736 9.7e-25 116.7 78 67.9
A05p29830 Brassica napus HOM05D003132 ORTHO05D003736 9.7e-25 116.7 78 67.9
C05p45020 Brassica napus HOM05D003132 ORTHO05D003736 9.7e-25 116.7 78 67.9
BolC5t33226H Brassica oleracea HOM05D003132 ORTHO05D003736 9.7e-25 116.7 78 67.9
Eucgr.F03739 Eucalyptus grandis HOM05D003132 ORTHO05D003736 9.7e-25 116.7 91 61.5
Glyma.04G254000 Glycine max HOM05D003132 ORTHO05D003736 1.3e-24 116.3 91 62.6
Phvul.009G026000 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 2.2e-24 115.5 91 62.6
VMungo1309G0264 Vigna mungo HOM05D003132 ORTHO05D003736 2.2e-24 115.5 91 62.6
Oeu001990.2 Olea europaea HOM05D003132 ORTHO05D003736 2.8e-24 115.2 86 62.8
PGR044G0368 Punica granatum HOM05D003132 ORTHO05D003736 2.8e-24 115.2 91 60.4
BraA05t21832Z Brassica rapa HOM05D003132 ORTHO05D003736 3.7e-24 114.8 78 66.7
Thhalv10020497m.g Eutrema salsugineum HOM05D003132 ORTHO05D003736 3.7e-24 114.8 78 65.4
Sed0019762 Sechium edule HOM05D003132 ORTHO05D003736 8.2e-24 113.6 91 59.3
RcHm_v2.0_Chr7g0240821 Rosa chinensis HOM05D003132 ORTHO05D003736 1.1e-23 113.2 91 58.2
unitig_21.g20190 Utricularia gibba HOM05D003132 ORTHO05D003736 1.4e-23 112.8 117 49.6
Lsat_1_v5_gn_9_67980 Lactuca sativa HOM05D003132 ORTHO05D003736 1.8e-23 112.5 91 54.9
CBR_g241 Chara braunii HOM05D003132 ORTHO05D003736 2.4e-23 112.1 89 59.6
Duzib041G0476 Durio zibethinus HOM05D003132 ORTHO05D003736 3.1e-23 111.7 91 61.5
FAN04G1930 Fragaria x ananassa HOM05D003132 ORTHO05D003736 9.1e-23 110.2 91 58.2
FAN08G0026 Fragaria x ananassa HOM05D003132 ORTHO05D003736 9.1e-23 110.2 91 58.2
FAN13G2880 Fragaria x ananassa HOM05D003132 ORTHO05D003736 9.1e-23 110.2 91 58.2
FvH4_5g38820 Fragaria vesca HOM05D003132 ORTHO05D003736 1.2e-22 109.8 91 58.2
FAN18G1429 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.2e-22 109.8 91 58.2
SGA_v2.0_scaffold118G32441 Striga asiatica HOM05D003132 ORTHO05D003736 1.2e-22 109.8 91 57.1
ATR1089G130 Amborella trichopoda HOM05D003132 ORTHO05D003736 1.6e-22 109.4 82 61.0
GSVIVG01037118001 Vitis vinifera HOM05D003132 ORTHO05D003736 2.0e-22 109.0 83 60.2
TAR628G0652 Trochodendron aralioides HOM05D003132 ORTHO05D003736 3.8e-21 104.8 78 64.1
AagrBONN_evm.TU.Sc2ySwM_368.655 Anthoceros agrestis HOM05D003132 ORTHO05D003736 5.0e-21 104.4 71 59.2
Haze_00527 Corylus avellana HOM05D003132 ORTHO05D003736 5.0e-21 104.4 73 71.2
Atru.chr13.1355 Acer truncatum HOM05D003132 ORTHO05D003736 6.5e-21 104.0 91 59.3
Cfa021494 Carpinus fangiana HOM05D003132 ORTHO05D003736 6.5e-21 104.0 83 59.0
Aqoxy5G02472 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 8.5e-21 103.6 89 58.4
vmacro00916 Vaccinium macrocarpon HOM05D003132 ORTHO05D003736 8.5e-21 103.6 84 56.0
Nn5g27185 Nelumbo nucifera HOM05D003132 ORTHO05D003736 1.1e-20 103.2 78 61.5
Rhsim12G0001000 Rhododendron simsii HOM05D003132 ORTHO05D003736 1.5e-20 102.8 83 56.6
Haze_14017 Corylus avellana HOM05D003132 ORTHO05D003736 1.9e-20 102.4 83 57.8
Actinidia01536 Actinidia chinensis HOM05D003132 ORTHO05D003736 2.5e-20 102.1 78 61.5
Ciclev10020271m.g Citrus clementina HOM05D003132 ORTHO05D003736 2.5e-20 102.1 83 57.8
PGR102G0292 Punica granatum HOM05D003132 ORTHO05D003736 2.5e-20 102.1 84 53.6
Medtr3g009180 Medicago truncatula HOM05D003132 ORTHO05D003736 3.2e-20 101.7 77 61.0
Sabra05G0129000 Salix brachista HOM05D003132 ORTHO05D003736 3.2e-20 101.7 121 47.9
TPR.G16695 Trifolium pratense HOM05D003132 ORTHO05D003736 3.2e-20 101.7 77 61.0
Lj3g0025144 Lotus japonicus HOM05D003132 ORTHO05D003736 4.2e-20 101.3 85 55.3
QL09p001110 Quercus lobata HOM05D003132 ORTHO05D003736 4.2e-20 101.3 78 60.3
CiPaw.03G011700 Carya illinoinensis HOM05D003132 ORTHO05D003736 9.4e-20 100.1 83 56.6
PRCOL_00006551 Prasinoderma coloniale HOM05D003132 ORTHO05D003736 9.4e-20 100.1 94 53.2
Atru.chr13.2600 Acer truncatum HOM05D003132 ORTHO05D003736 2.7e-19 98.6 86 54.7
Prupe.8G002200 Prunus persica HOM05D003132 ORTHO05D003736 2.7e-19 98.6 86 53.5
Eucgr.F04096 Eucalyptus grandis HOM05D003132 ORTHO05D003736 3.6e-19 98.2 83 53.0
HPP92_002181 Vanilla planifolia HOM05D003132 ORTHO05D003736 3.6e-19 98.2 66 71.2
Sabra19G0078500 Salix brachista HOM05D003132 ORTHO05D003736 1.0e-18 96.7 84 50.0
COL.COLO4_25069 Corchorus olitorius HOM05D003132 ORTHO05D003736 1.4e-18 96.3 78 55.1
Thecc.08G166600 Theobroma cacao HOM05D003132 ORTHO05D003736 1.4e-18 96.3 81 54.3
FvH4_2g00230 Fragaria vesca HOM05D003132 ORTHO05D003736 1.8e-18 95.9 76 57.9
FAN24G0668 Fragaria x ananassa HOM05D003132 ORTHO05D003736 1.8e-18 95.9 76 57.9
Phvul.005G006600 Phaseolus vulgaris HOM05D003132 ORTHO05D003736 1.8e-18 95.9 89 50.6
Potri.019G066200 Populus trichocarpa HOM05D003132 ORTHO05D003736 1.8e-18 95.9 78 53.8
Glyma.04G116900 Glycine max HOM05D003132 ORTHO05D003736 2.3e-18 95.5 77 55.8
Zm00001eb064020 Zea mays HOM05D003132 ORTHO05D003736 3.0e-18 95.1 76 57.9
MD10G1001000 Malus domestica HOM05D003132 ORTHO05D003736 4.0e-18 94.7 86 52.3
arahy.Tifrunner.gnm1.ann1.F59MVU Arachis hypogaea HOM05D003132 ORTHO05D003736 5.2e-18 94.4 83 51.8
arahy.Tifrunner.gnm1.ann1.M3HMN7 Arachis hypogaea HOM05D003132 ORTHO05D003736 5.2e-18 94.4 83 51.8
RcHm_v2.0_Chr6g0249521 Rosa chinensis HOM05D003132 ORTHO05D003736 5.2e-18 94.4 76 56.6
Cpa.g.sc249.17 Carica papaya HOM05D003132 ORTHO05D003736 8.8e-18 93.6 78 55.1
FAN19G2774 Fragaria x ananassa HOM05D003132 ORTHO05D003736 8.8e-18 93.6 76 55.3
AT5G09320 Arabidopsis thaliana HOM05D003132 ORTHO05D003736 2.0e-17 92.4 91 49.5
Manes.18G119900 Manihot esculenta HOM05D003132 ORTHO05D003736 4.4e-17 91.3 83 51.8
Gohir.D08G251300 Gossypium hirsutum HOM05D003132 ORTHO05D003736 5.7e-17 90.9 76 55.3
Gorai.004G268000 Gossypium raimondii HOM05D003132 ORTHO05D003736 5.7e-17 90.9 76 55.3
Hma1.2p1_0378F.1_g139670 Hydrangea macrophylla HOM05D003132 ORTHO05D003736 5.7e-17 90.9 75 56.0
Cre12.g547450 Chlamydomonas reinhardtii HOM05D003132 ORTHO05D003736 8.3e-16 87.0 87 46.0
Duzib177G0974 Durio zibethinus HOM05D003132 ORTHO05D003736 3.1e-15 85.1 70 55.7
TWI12G0091 Tripterygium wilfordii HOM05D003132 ORTHO05D003736 3.1e-15 85.1 90 43.3
Carub.0006s0787 Capsella rubella HOM05D003132 ORTHO05D003736 7.0e-15 84.0 91 45.1
CARHR204070 Cardamine hirsuta HOM05D003132 ORTHO05D003736 9.1e-15 83.6 91 46.2
Ah.05g172730 Amaranthus hybridus HOM05D003132 ORTHO05D003736 2.7e-14 82.0 64 57.8
Os03g0842700 Oryza sativa ssp. japonica HOM05D003132 ORTHO05D003736 6.5e-13 77.4 75 50.7
MBI03_g39997_MAGBIO Magnolia biondii HOM05D003132 ORTHO05D003736 1.5e-12 76.3 54 66.7
Aqoxy4G02982 Aquilegia oxysepala HOM05D003132 ORTHO05D003736 2.5e-12 75.5 65 60.0
CDE04G2334 Ceratophyllum demersum HOM05D003132 ORTHO05D003736 1.8e-10 69.3 62 51.6
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.2e-10 67.8 57 52.6
BraA05t21819Z Brassica rapa HOM05D003132 ORTHO05D003736 6.8e-10 67.4 45 62.2
Potri.013G092250 Populus trichocarpa HOM05D003132 ORTHO05D003736 2.6e-09 65.5 72 43.1
FvH4_3g37600 Fragaria vesca HOM05D003132 ORTHO05D003736 3.4e-09 65.1 70 41.4
SHI23777 Sapria himalayana HOM05D003132 ORTHO05D003736 4.9e-08 61.2 52 53.8
Gohir.A08G230900 Gossypium hirsutum HOM05D003132 ORTHO05D003736 1.4e-07 59.7 76 40.8


User provided reference genes

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