Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_14491 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 1.4e-83 312.8 147 100.0
SEGI_32864 Sequoiadendron giganteum HOM05D003208 ORTHO05D004103 1.4e-83 312.8 147 100.0
MBI02_g27964_MAGBIO Magnolia biondii HOM05D003208 ORTHO05D004103 3.2e-51 205.3 140 69.3
Cfa002613 Carpinus fangiana HOM05D003208 ORTHO05D004103 3.3e-48 195.3 139 67.6
Ciclev10024895m.g Citrus clementina HOM05D003208 ORTHO05D004103 5.7e-48 194.5 139 67.6
Nn5g30027 Nelumbo nucifera HOM05D003208 ORTHO05D004103 5.7e-48 194.5 139 66.9
QL06p048297 Quercus lobata HOM05D003208 ORTHO05D004103 7.4e-48 194.1 139 66.2
ATR0684G089 Amborella trichopoda HOM05D003208 ORTHO05D004103 9.7e-48 193.7 143 64.3
PGR102G0950 Punica granatum HOM05D003208 ORTHO05D004103 9.7e-48 193.7 139 63.3
DCAR_003477 Daucus carota HOM05D003208 ORTHO05D004103 1.7e-47 193.0 139 66.2
Atru.chr3.1361 Acer truncatum HOM05D003208 ORTHO05D004103 2.8e-47 192.2 139 67.6
Haze_24867 Corylus avellana HOM05D003208 ORTHO05D004103 2.8e-47 192.2 140 65.0
Aqoxy6G00734 Aquilegia oxysepala HOM05D003208 ORTHO05D004103 3.7e-47 191.8 139 67.6
CDE10G0727 Ceratophyllum demersum HOM05D003208 ORTHO05D004103 3.7e-47 191.8 140 64.3
Eucgr.H04746 Eucalyptus grandis HOM05D003208 ORTHO05D004103 3.7e-47 191.8 139 64.0
Prupe.6G191700 Prunus persica HOM05D003208 ORTHO05D004103 6.3e-47 191.0 139 65.5
Ca_17757_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 1.8e-46 189.5 139 63.3
MD01G1034300 Malus domestica HOM05D003208 ORTHO05D004103 1.8e-46 189.5 139 64.0
Os09g0471900 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 1.8e-46 189.5 139 64.0
SGA_v2.0_scaffold111G31500 Striga asiatica HOM05D003208 ORTHO05D004103 1.8e-46 189.5 139 64.0
TAR628G1304 Trochodendron aralioides HOM05D003208 ORTHO05D004103 2.4e-46 189.1 139 64.7
Nitab4.5_0002604g0040 Nicotiana tabacum HOM05D003208 ORTHO05D004103 4.1e-46 188.3 139 64.0
Oeu056635.1 Olea europaea HOM05D003208 ORTHO05D004103 4.1e-46 188.3 139 64.7
unitig_699.g19581 Utricularia gibba HOM05D003208 ORTHO05D004103 4.1e-46 188.3 139 64.0
Dinv13221 Davidia involucrata HOM05D003208 ORTHO05D004103 5.3e-46 188.0 139 65.5
Lalb_Chr07g0185301 Lupinus albus HOM05D003208 ORTHO05D004103 5.3e-46 188.0 139 64.0
THA.LOC104807678 Tarenaya hassleriana HOM05D003208 ORTHO05D004103 5.3e-46 188.0 139 62.6
GSVIVG01003416001 Vitis vinifera HOM05D003208 ORTHO05D004103 5.3e-46 188.0 139 65.5
MELO3C007741.2 Cucumis melo HOM05D003208 ORTHO05D004103 7.0e-46 187.6 139 63.3
CsaV3_6G045280 Cucumis sativus L. HOM05D003208 ORTHO05D004103 7.0e-46 187.6 139 63.3
Actinidia19997 Actinidia chinensis HOM05D003208 ORTHO05D004103 9.1e-46 187.2 139 64.0
FvH4_1g20370 Fragaria vesca HOM05D003208 ORTHO05D004103 9.1e-46 187.2 139 64.0
Hma1.2p1_0019F.1_g013690 Hydrangea macrophylla HOM05D003208 ORTHO05D004103 9.1e-46 187.2 144 62.5
FAN26G2141 Fragaria x ananassa HOM05D003208 ORTHO05D004103 1.2e-45 186.8 139 63.3
Lj4g0011115 Lotus japonicus HOM05D003208 ORTHO05D004103 1.5e-45 186.4 140 62.9
vmacro12976 Vaccinium macrocarpon HOM05D003208 ORTHO05D004103 1.5e-45 186.4 139 64.0
AUR62003252 Chenopodium quinoa HOM05D003208 ORTHO05D004103 2.0e-45 186.0 139 64.7
ClCG01G018610 Citrullus lanatus HOM05D003208 ORTHO05D004103 2.0e-45 186.0 139 62.6
Lj2C541T5 Lonicera japonica HOM05D003208 ORTHO05D004103 2.0e-45 186.0 139 64.7
Glyma.05G176167 Glycine max HOM05D003208 ORTHO05D004103 2.6e-45 185.7 139 63.3
Aa31LG7G14430 Aethionema arabicum HOM05D003208 ORTHO05D004103 3.4e-45 185.3 139 61.2
arahy.Tifrunner.gnm1.ann1.56KYQ9 Arachis hypogaea HOM05D003208 ORTHO05D004103 3.4e-45 185.3 139 63.3
CiPaw.03G144800 Carya illinoinensis HOM05D003208 ORTHO05D004103 3.4e-45 185.3 139 62.6
Glyma.11G241400 Glycine max HOM05D003208 ORTHO05D004103 3.4e-45 185.3 139 62.6
Rhsim10G0166900 Rhododendron simsii HOM05D003208 ORTHO05D004103 3.4e-45 185.3 140 62.1
TWI77G0296 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 3.4e-45 185.3 139 63.3
Peaxi162Scf00381g00061 Petunia axillaris HOM05D003208 ORTHO05D004103 4.5e-45 184.9 139 63.3
SalBow3G0841 Salvia bowleyana HOM05D003208 ORTHO05D004103 5.9e-45 184.5 139 62.6
SalBow3G1582 Salvia bowleyana HOM05D003208 ORTHO05D004103 5.9e-45 184.5 139 62.6
PGSC0003DMG400016157 Solanum tuberosum HOM05D003208 ORTHO05D004103 5.9e-45 184.5 139 63.3
Zm00001eb315780 Zea mays HOM05D003208 ORTHO05D004103 5.9e-45 184.5 141 62.4
Ah.02g126130 Amaranthus hybridus HOM05D003208 ORTHO05D004103 7.7e-45 184.1 139 63.3
CAN.G151.12 Capsicum annuum HOM05D003208 ORTHO05D004103 7.7e-45 184.1 139 64.7
Cpa.g.sc55.83 Carica papaya HOM05D003208 ORTHO05D004103 7.7e-45 184.1 139 62.6
Manes.12G131000 Manihot esculenta HOM05D003208 ORTHO05D004103 7.7e-45 184.1 139 61.9
Sed0018597 Sechium edule HOM05D003208 ORTHO05D004103 7.7e-45 184.1 139 61.9
Solyc11g010110.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 7.7e-45 184.1 139 64.0
MSTRG.2578 Avicennia marina HOM05D003208 ORTHO05D004103 1.0e-44 183.7 139 61.9
CANSAT01G1547 Cannabis sativa HOM05D003208 ORTHO05D004103 1.0e-44 183.7 139 61.9
FAN23G1395 Fragaria x ananassa HOM05D003208 ORTHO05D004103 1.0e-44 183.7 139 62.6
Phvul.001G253400 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 1.0e-44 183.7 139 61.9
RcHm_v2.0_Chr2g0112501 Rosa chinensis HOM05D003208 ORTHO05D004103 1.0e-44 183.7 139 62.6
Sopen05g029940 Solanum pennellii HOM05D003208 ORTHO05D004103 1.0e-44 183.7 139 64.0
Sopen11g004910 Solanum pennellii HOM05D003208 ORTHO05D004103 1.0e-44 183.7 139 64.0
AUR62027218 Chenopodium quinoa HOM05D003208 ORTHO05D004103 1.3e-44 183.3 139 64.0
Migut.H02342 Erythranthe guttata HOM05D003208 ORTHO05D004103 1.3e-44 183.3 139 60.4
Thhalv10000050m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.7e-44 183.0 139 62.6
Sabra07G0079200 Salix brachista HOM05D003208 ORTHO05D004103 1.7e-44 183.0 139 61.2
Sp4g01430 Schrenkiella parvula HOM05D003208 ORTHO05D004103 1.7e-44 183.0 139 60.4
HPP92_013110 Vanilla planifolia HOM05D003208 ORTHO05D004103 1.7e-44 183.0 139 64.0
VMungo1383G1326 Vigna mungo HOM05D003208 ORTHO05D004103 1.7e-44 183.0 139 61.9
AL4G11900 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 2.2e-44 182.6 139 59.0
AT2G22400 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 2.2e-44 182.6 139 59.0
FAN28G0091 Fragaria x ananassa HOM05D003208 ORTHO05D004103 2.2e-44 182.6 139 61.9
Lalb_Chr13g0295911 Lupinus albus HOM05D003208 ORTHO05D004103 2.2e-44 182.6 138 62.3
Psat5g090760 Pisum sativum HOM05D003208 ORTHO05D004103 2.2e-44 182.6 139 61.2
Sc03g0000100 Simmondsia chinensis HOM05D003208 ORTHO05D004103 2.2e-44 182.6 139 63.3
VMungo0251G3398 Vigna mungo HOM05D003208 ORTHO05D004103 2.2e-44 182.6 139 63.3
Carub.0004s0156 Capsella rubella HOM05D003208 ORTHO05D004103 2.9e-44 182.2 139 59.0
Phvul.002G261300 Phaseolus vulgaris HOM05D003208 ORTHO05D004103 2.9e-44 182.2 139 62.6
Potri.007G096100 Populus trichocarpa HOM05D003208 ORTHO05D004103 2.9e-44 182.2 139 61.2
Solyc05g051520.3 Solanum lycopersicum HOM05D003208 ORTHO05D004103 2.9e-44 182.2 139 63.3
BcaB08g35063 Brassica carinata HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 61.9
BcaC07g41076 Brassica carinata HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 61.9
A09p57600 Brassica napus HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 61.9
C08p40800 Brassica napus HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 61.9
BolC8t51644H Brassica oleracea HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 61.9
BraA09t41152Z Brassica rapa HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 61.9
Thecc.01G096900 Theobroma cacao HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 61.2
TPR.G6241 Trifolium pratense HOM05D003208 ORTHO05D004103 3.8e-44 181.8 139 62.6
arahy.Tifrunner.gnm1.ann1.G6ARYH Arachis hypogaea HOM05D003208 ORTHO05D004103 5.0e-44 181.4 135 63.0
Glyma.08G133700 Glycine max HOM05D003208 ORTHO05D004103 6.5e-44 181.0 139 61.9
TWI74G0107 Tripterygium wilfordii HOM05D003208 ORTHO05D004103 6.5e-44 181.0 139 64.0
CARHR113590 Cardamine hirsuta HOM05D003208 ORTHO05D004103 8.5e-44 180.6 139 60.4
Mapoly0022s0008 Marchantia polymorpha HOM05D003208 ORTHO05D004103 8.5e-44 180.6 139 60.4
Lsat_1_v5_gn_5_45360 Lactuca sativa HOM05D003208 ORTHO05D004103 1.1e-43 180.3 139 64.0
Medtr8g089980 Medicago truncatula HOM05D003208 ORTHO05D004103 1.1e-43 180.3 139 62.6
HanXRQChr07g0196311 Helianthus annuus HOM05D003208 ORTHO05D004103 1.4e-43 179.9 139 60.4
Peaxi162Scf00044g00112 Petunia axillaris HOM05D003208 ORTHO05D004103 1.4e-43 179.9 139 61.2
Duzib147G1622 Durio zibethinus HOM05D003208 ORTHO05D004103 3.2e-43 178.7 139 59.7
ECA246G0394 Erigeron canadensis HOM05D003208 ORTHO05D004103 3.2e-43 178.7 139 61.9
Lalb_Chr23g0277531 Lupinus albus HOM05D003208 ORTHO05D004103 4.2e-43 178.3 139 59.7
Ca_16514_v3 Cicer arietinum L. HOM05D003208 ORTHO05D004103 7.2e-43 177.6 139 58.3
Pp3c15_5210 Physcomitrium patens HOM05D003208 ORTHO05D004103 7.2e-43 177.6 139 62.6
Pp3c15_5220 Physcomitrium patens HOM05D003208 ORTHO05D004103 7.2e-43 177.6 139 62.6
Psat7g057040 Pisum sativum HOM05D003208 ORTHO05D004103 7.2e-43 177.6 139 60.4
PSO541G6125 Papaver somniferum HOM05D003208 ORTHO05D004103 9.4e-43 177.2 139 62.6
Medtr3g086950 Medicago truncatula HOM05D003208 ORTHO05D004103 1.2e-42 176.8 139 58.3
Sed0002614 Sechium edule HOM05D003208 ORTHO05D004103 1.2e-42 176.8 139 59.0
C04p51440 Brassica napus HOM05D003208 ORTHO05D004103 1.6e-42 176.4 139 59.7
BolC4t26736H Brassica oleracea HOM05D003208 ORTHO05D004103 1.6e-42 176.4 139 59.7
Gohir.D03G039900 Gossypium hirsutum HOM05D003208 ORTHO05D004103 1.6e-42 176.4 139 59.7
Gorai.003G041000 Gossypium raimondii HOM05D003208 ORTHO05D004103 1.6e-42 176.4 139 59.7
A04p16880 Brassica napus HOM05D003208 ORTHO05D004103 4.7e-42 174.9 139 58.3
BraA04t17321Z Brassica rapa HOM05D003208 ORTHO05D004103 4.7e-42 174.9 139 58.3
PSO675G0282 Papaver somniferum HOM05D003208 ORTHO05D004103 4.7e-42 174.9 139 61.2
Gohir.A02G129100 Gossypium hirsutum HOM05D003208 ORTHO05D004103 8.0e-42 174.1 139 59.0
Cc07_g14750 Coffea canephora HOM05D003208 ORTHO05D004103 1.0e-41 173.7 139 59.7
AagrBONN_evm.TU.Sc2ySwM_368.2854 Anthoceros agrestis HOM05D003208 ORTHO05D004103 1.4e-41 173.3 139 58.3
TPR.G15995 Trifolium pratense HOM05D003208 ORTHO05D004103 1.8e-41 172.9 139 57.6
BcaC02g08664 Brassica carinata HOM05D003208 ORTHO05D004103 2.3e-41 172.6 139 58.3
Lj6g0024442 Lotus japonicus HOM05D003208 ORTHO05D004103 8.8e-41 170.6 139 59.7
Os08g0484400 Oryza sativa ssp. japonica HOM05D003208 ORTHO05D004103 1.5e-40 169.9 139 59.0
SMO165G0121 Selaginella moellendorffii HOM05D003208 ORTHO05D004103 2.0e-40 169.5 139 56.1
EL10Ac6g14824 Beta vulgaris HOM05D003208 ORTHO05D004103 9.7e-40 167.2 140 57.1
AL7G12310 Arabidopsis lyrata HOM05D003208 ORTHO05D004103 2.8e-39 165.6 139 58.3
Carub.0007s0196 Capsella rubella HOM05D003208 ORTHO05D004103 4.8e-39 164.9 137 55.5
BcaNung05188 Brassica carinata HOM05D003208 ORTHO05D004103 1.1e-38 163.7 139 56.1
A01p00920 Brassica napus HOM05D003208 ORTHO05D004103 3.1e-38 162.2 139 56.8
BraA01t00090Z Brassica rapa HOM05D003208 ORTHO05D004103 3.1e-38 162.2 139 56.8
CARHR246680 Cardamine hirsuta HOM05D003208 ORTHO05D004103 3.1e-38 162.2 139 56.1
Sp7g35870 Schrenkiella parvula HOM05D003208 ORTHO05D004103 3.1e-38 162.2 139 56.8
AT4G40000 Arabidopsis thaliana HOM05D003208 ORTHO05D004103 7.0e-38 161.0 139 57.6
C01p01050 Brassica napus HOM05D003208 ORTHO05D004103 9.1e-38 160.6 139 56.8
BolC1t00102H Brassica oleracea HOM05D003208 ORTHO05D004103 9.1e-38 160.6 139 56.8
Thhalv10024482m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.2e-37 160.2 139 53.2
Thhalv10000064m.g Eutrema salsugineum HOM05D003208 ORTHO05D004103 1.6e-37 159.8 141 54.6
BcaNung00929 Brassica carinata HOM05D003208 ORTHO05D004103 2.6e-37 159.1 139 55.4
Aa31LG6G15240 Aethionema arabicum HOM05D003208 ORTHO05D004103 5.9e-37 157.9 131 58.0
Zm00001eb033550 Zea mays HOM05D003208 ORTHO05D004103 5.9e-37 157.9 139 56.1
MD15G1321600 Malus domestica HOM05D003208 ORTHO05D004103 2.9e-36 155.6 117 62.4
PGR004G2195 Punica granatum HOM05D003208 ORTHO05D004103 3.2e-35 152.1 139 51.8
CAN.G905.28 Capsicum annuum HOM05D003208 ORTHO05D004103 9.4e-35 150.6 122 61.5
COL.COLO4_27282 Corchorus olitorius HOM05D003208 ORTHO05D004103 2.7e-34 149.1 115 62.6
Nitab4.5_0000241g0270 Nicotiana tabacum HOM05D003208 ORTHO05D004103 2.7e-34 149.1 117 61.5
PRCOL_00004940 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 8.8e-33 144.1 128 58.6
SHI01114 Sapria himalayana HOM05D003208 ORTHO05D004103 2.0e-32 142.9 110 61.8
Lj2A541T60 Lonicera japonica HOM05D003208 ORTHO05D004103 1.4e-30 136.7 117 59.8
MCO16G190 Micromonas commoda HOM05D003208 ORTHO05D004103 7.7e-29 131.0 133 51.1
PSO675G0168 Papaver somniferum HOM05D003208 ORTHO05D004103 1.0e-28 130.6 104 59.6
PSO675G5792 Papaver somniferum HOM05D003208 ORTHO05D004103 1.0e-28 130.6 104 59.6
Cre03.g179860 Chlamydomonas reinhardtii HOM05D003208 ORTHO05D004103 2.9e-28 129.0 135 47.4
Eucgr.I00532 Eucalyptus grandis HOM05D003208 ORTHO05D004103 8.0e-26 120.9 109 53.2
Nitab4.5_0000128g0250 Nicotiana tabacum HOM05D003208 ORTHO05D004103 1.0e-25 120.6 103 58.3
CBR_g80544 Chara braunii HOM05D003208 ORTHO05D004103 8.8e-25 117.5 131 49.6
Psat7g145480 Pisum sativum HOM05D003208 ORTHO05D004103 1.2e-24 117.1 101 54.5
HPP92_013098 Vanilla planifolia HOM05D003208 ORTHO05D004103 2.0e-24 116.3 139 50.4
MCO11G029 Micromonas commoda HOM05D003208 ORTHO05D004103 2.6e-24 115.9 142 44.4
Nitab4.5_0012684g0010 Nicotiana tabacum HOM05D003208 ORTHO05D004103 2.6e-24 115.9 101 58.4
Cfa024691 Carpinus fangiana HOM05D003208 ORTHO05D005480 6.6e-20 101.3 126 42.9
BcaC02g08709 Brassica carinata HOM05D003208 ORTHO05D004103 4.2e-19 98.6 58 69.0
MCO12G374 Micromonas commoda HOM05D003208 ORTHO05D004103 1.4e-17 93.6 133 37.6
PRCOL_00006481 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 4.1e-14 82.0 133 33.1
Lsat_1_v5_gn_6_82341 Lactuca sativa HOM05D003208 ORTHO05D013695 5.9e-13 78.2 86 50.0
PRCOL_00002419 Prasinoderma coloniale HOM05D003208 ORTHO05D004103 2.3e-09 66.2 48 54.2
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 4.0e-09 65.5 127 33.9
HanXRQChr04g0104711 Helianthus annuus HOM05D003208 ORTHO05D004103 3.4e-08 62.4 36 77.8


User provided reference genes

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