Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_32455 Sequoiadendron giganteum HOM05D002702 ORTHO05D015070 1.6e-82 309.7 194 100.0
ATR0697G089 Amborella trichopoda HOM05D002702 ORTHO05D003416 2.4e-14 83.2 162 42.0
PSO832G1528 Papaver somniferum HOM05D002702 ORTHO05D003416 1.0e-12 77.8 66 62.1
Pp3c8_20180 Physcomitrium patens HOM05D002702 ORTHO05D003416 1.0e-12 77.8 53 75.5
Sc25g0001160 Simmondsia chinensis HOM05D002702 ORTHO05D003416 1.7e-12 77.0 64 64.1
Mapoly0001s0017 Marchantia polymorpha HOM05D002702 ORTHO05D003416 3.9e-12 75.9 58 67.2
MBI17_g29780_MAGBIO Magnolia biondii HOM05D002702 ORTHO05D003416 6.6e-12 75.1 90 53.3
PSO210G0347 Papaver somniferum HOM05D002702 ORTHO05D003416 6.6e-12 75.1 114 43.0
unitig_748.g8246 Utricularia gibba HOM05D002702 ORTHO05D003416 6.6e-12 75.1 58 69.0
TAR636G0479 Trochodendron aralioides HOM05D002702 ORTHO05D003416 8.7e-12 74.7 59 67.8
Dinv25037 Davidia involucrata HOM05D002702 ORTHO05D003416 1.5e-11 73.9 53 73.6
Thecc.05G241000 Theobroma cacao HOM05D002702 ORTHO05D003416 1.5e-11 73.9 57 68.4
PGR042G0279 Punica granatum HOM05D002702 ORTHO05D003416 1.9e-11 73.6 55 69.1
COL.COLO4_20084 Corchorus olitorius HOM05D002702 ORTHO05D003416 2.5e-11 73.2 75 57.3
GSVIVG01029946001 Vitis vinifera HOM05D002702 ORTHO05D003416 3.3e-11 72.8 56 67.9
ClCG03G016660 Citrullus lanatus HOM05D002702 ORTHO05D003416 4.3e-11 72.4 64 62.5
PSO170G0409 Papaver somniferum HOM05D002702 ORTHO05D003416 5.6e-11 72.0 54 70.4
PGR031G3358 Punica granatum HOM05D002702 ORTHO05D003416 5.6e-11 72.0 75 54.7
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 7.3e-11 71.6 63 61.9
Os05g0305100 Oryza sativa ssp. japonica HOM05D002702 ORTHO05D003416 7.3e-11 71.6 121 43.8
Dinv17311 Davidia involucrata HOM05D002702 ORTHO05D003416 9.6e-11 71.2 62 61.3
CDE10G0041 Ceratophyllum demersum HOM05D002702 ORTHO05D003416 1.3e-10 70.9 57 70.2
Gohir.D13G166200 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.3e-10 70.9 57 64.9
Manes.08G152300 Manihot esculenta HOM05D002702 ORTHO05D003416 1.3e-10 70.9 53 67.9
Dinv17316 Davidia involucrata HOM05D002702 ORTHO05D003416 1.6e-10 70.5 62 61.3
Gohir.A11G164500 Gossypium hirsutum HOM05D002702 ORTHO05D003416 1.6e-10 70.5 57 64.9
AL3G20510 Arabidopsis lyrata HOM05D002702 ORTHO05D003416 2.8e-10 69.7 66 57.6
Cpa.g.c27574 Carica papaya HOM05D002702 ORTHO05D003416 2.8e-10 69.7 53 66.0
Gohir.A13G160900 Gossypium hirsutum HOM05D002702 ORTHO05D003416 2.8e-10 69.7 57 64.9
Gorai.013G196300 Gossypium raimondii HOM05D002702 ORTHO05D003416 2.8e-10 69.7 57 64.9
THA.LOC104816256 Tarenaya hassleriana HOM05D002702 ORTHO05D003416 2.8e-10 69.7 55 63.6
Lj4g0005434 Lotus japonicus HOM05D002702 ORTHO05D003416 3.6e-10 69.3 90 47.8
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 4.8e-10 68.9 70 57.1
Thhalv10020503m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 4.8e-10 68.9 66 56.1
Zm00001eb294470 Zea mays HOM05D002702 ORTHO05D003416 4.8e-10 68.9 48 77.1
Lsat_1_v5_gn_1_126300 Lactuca sativa HOM05D002702 ORTHO05D003416 6.2e-10 68.6 52 67.3
Zm00001eb190030 Zea mays HOM05D002702 ORTHO05D003416 6.2e-10 68.6 48 77.1
Zm00001eb294450 Zea mays HOM05D002702 ORTHO05D003416 6.2e-10 68.6 48 77.1
Gohir.D11G170800 Gossypium hirsutum HOM05D002702 ORTHO05D003416 8.1e-10 68.2 57 63.2
Gorai.007G182800 Gossypium raimondii HOM05D002702 ORTHO05D003416 8.1e-10 68.2 57 63.2
Zm00001eb342490 Zea mays HOM05D002702 ORTHO05D003416 8.1e-10 68.2 48 77.1
CsaV3_1G039340 Cucumis sativus L. HOM05D002702 ORTHO05D003416 1.1e-09 67.8 143 40.6
Lj2g0010098 Lotus japonicus HOM05D002702 ORTHO05D003416 1.1e-09 67.8 69 55.1
Peaxi162Scf00978g00036 Petunia axillaris HOM05D002702 ORTHO05D003416 1.1e-09 67.8 59 62.7
TWI60G0137 Tripterygium wilfordii HOM05D002702 ORTHO05D003416 1.1e-09 67.8 58 62.1
Zm00001eb077940 Zea mays HOM05D003030 ORTHO05D015070 1.4e-09 67.4 48 75.0
CAN.G756.30 Capsicum annuum HOM05D002702 ORTHO05D003416 1.8e-09 67.0 58 63.8
Medtr6g027510 Medicago truncatula HOM05D002702 ORTHO05D003416 1.8e-09 67.0 62 61.3
Sed0008593 Sechium edule HOM05D002702 ORTHO05D003416 1.8e-09 67.0 95 44.2
A03p35990 Brassica napus HOM05D002702 ORTHO05D003416 2.4e-09 66.6 85 43.5
BraA03t12771Z Brassica rapa HOM05D002702 ORTHO05D003416 2.4e-09 66.6 85 43.5
MCO16G125 Micromonas commoda HOM05D002702 ORTHO05D003416 4.0e-09 65.9 47 59.6
SalBow2G1241 Salvia bowleyana HOM05D002702 ORTHO05D003416 5.3e-09 65.5 57 59.6
Glyma.16G035400 Glycine max HOM05D002702 ORTHO05D003416 6.9e-09 65.1 51 64.7
Aqoxy4G00023 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 9.0e-09 64.7 54 57.4
MELO3C015360.2 Cucumis melo HOM05D002702 ORTHO05D003416 9.0e-09 64.7 143 37.8
Migut.K00214 Erythranthe guttata HOM05D002702 ORTHO05D003416 9.0e-09 64.7 53 66.0
Lalb_Chr02g0157411 Lupinus albus HOM05D002702 ORTHO05D003416 9.0e-09 64.7 53 66.0
Phvul.001G106433 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 9.0e-09 64.7 85 45.9
Sabra16G0149300 Salix brachista HOM05D002702 ORTHO05D003416 9.0e-09 64.7 94 46.8
Glyma.19G117700 Glycine max HOM05D002702 ORTHO05D003416 1.2e-08 64.3 51 62.7
Prupe.1G180700 Prunus persica HOM05D002702 ORTHO05D003416 1.2e-08 64.3 77 53.2
Sp3g07740 Schrenkiella parvula HOM05D002702 ORTHO05D003416 1.2e-08 64.3 66 54.5
C03p43620 Brassica napus HOM05D002702 ORTHO05D003416 1.5e-08 63.9 104 41.3
CBR_g31712 Chara braunii HOM05D002702 ORTHO05D003416 1.5e-08 63.9 64 51.6
Potri.009G039100 Populus trichocarpa HOM05D002702 ORTHO05D003416 1.5e-08 63.9 131 38.2
AagrBONN_evm.TU.Sc2ySwM_228.5644 Anthoceros agrestis HOM05D002702 ORTHO05D003416 2.0e-08 63.5 118 40.7
EL10Ac3g05092 Beta vulgaris HOM05D002702 ORTHO05D003416 2.0e-08 63.5 139 36.7
DCAR_031564 Daucus carota HOM05D002702 ORTHO05D003416 2.0e-08 63.5 81 44.4
FvH4_4g11810 Fragaria vesca HOM05D002702 ORTHO05D003416 2.0e-08 63.5 56 60.7
FAN07G2025 Fragaria x ananassa HOM05D002702 ORTHO05D003416 2.0e-08 63.5 56 60.7
Nitab4.5_0000563g0080 Nicotiana tabacum HOM05D002702 ORTHO05D003416 2.0e-08 63.5 54 61.1
Nitab4.5_0002341g0020 Nicotiana tabacum HOM05D002702 ORTHO05D003416 2.0e-08 63.5 54 61.1
BcaC01g04231 Brassica carinata HOM05D002702 ORTHO05D003416 2.6e-08 63.2 104 41.3
BolC3t16631H Brassica oleracea HOM05D002702 ORTHO05D003416 2.6e-08 63.2 104 41.3
Duzib128G1433 Durio zibethinus HOM05D002702 ORTHO05D003416 2.6e-08 63.2 50 66.0
Solyc01g088720.3 Solanum lycopersicum HOM05D002702 ORTHO05D003416 3.4e-08 62.8 53 60.4
Sopen01g035560 Solanum pennellii HOM05D002702 ORTHO05D003416 3.4e-08 62.8 53 60.4
Carub.0003s0847 Capsella rubella HOM05D002702 ORTHO05D003416 4.5e-08 62.4 55 56.4
SGA_v2.0_scaffold17G07984 Striga asiatica HOM05D002702 ORTHO05D003416 4.5e-08 62.4 72 55.6
HPP92_004334 Vanilla planifolia HOM05D002702 ORTHO05D003416 4.5e-08 62.4 54 66.7
Actinidia07964 Actinidia chinensis HOM05D002702 ORTHO05D003416 5.8e-08 62.0 57 57.9
Aa31LG3G1860 Aethionema arabicum HOM05D002702 ORTHO05D003416 5.8e-08 62.0 77 46.8
Nn7g37357 Nelumbo nucifera HOM05D002702 ORTHO05D003416 5.8e-08 62.0 47 66.0
RcHm_v2.0_Chr4g0409121 Rosa chinensis HOM05D002702 ORTHO05D003416 5.8e-08 62.0 52 63.5
Aqoxy5G01199 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 1.3e-07 60.8 137 32.8
CBR_g30840 Chara braunii HOM05D002702 ORTHO05D003416 1.3e-07 60.8 43 62.8
CiPaw.08G118400 Carya illinoinensis HOM05D002702 ORTHO05D003416 1.7e-07 60.5 48 66.7
PRCOL_00005646 Prasinoderma coloniale HOM05D002702 ORTHO05D003416 1.7e-07 60.5 71 45.1
Sc13g0009820 Simmondsia chinensis HOM05D002702 ORTHO05D019466 1.7e-07 60.5 54 53.7
Ciclev10019321m.g Citrus clementina HOM05D002702 ORTHO05D003416 2.2e-07 60.1 42 71.4
DCAR_013573 Daucus carota HOM05D002702 ORTHO05D003416 2.2e-07 60.1 124 33.9
HPP92_016841 Vanilla planifolia HOM05D002702 ORTHO05D015070 2.2e-07 60.1 51 64.7
Cc02_g13440 Coffea canephora HOM05D002702 ORTHO05D003416 2.9e-07 59.7 107 37.4
Haze_06436 Corylus avellana HOM05D002702 ORTHO05D003416 2.9e-07 59.7 59 55.9
CiPaw.15G041500 Carya illinoinensis HOM05D002702 ORTHO05D003416 3.8e-07 59.3 98 42.9
Ca_08321_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 3.8e-07 59.3 69 49.3
ECA233G5306 Erigeron canadensis HOM05D002702 ORTHO05D003416 3.8e-07 59.3 43 60.5
Potri.001G246100 Populus trichocarpa HOM05D002702 ORTHO05D003416 3.8e-07 59.3 135 38.5
Eucgr.A02144 Eucalyptus grandis HOM05D002702 ORTHO05D003416 4.9e-07 58.9 103 41.7
Psat3g086200 Pisum sativum HOM05D002702 ORTHO05D003416 4.9e-07 58.9 51 60.8
Aqoxy4G00362 Aquilegia oxysepala HOM05D002702 ORTHO05D003416 6.4e-07 58.5 47 66.0
AT3G09360 Arabidopsis thaliana HOM05D002702 ORTHO05D003416 6.4e-07 58.5 42 66.7
EL10Ac3g05292 Beta vulgaris HOM05D022334 ORTHO05D019466 1.1e-06 57.8 84 44.0
CARHR083720 Cardamine hirsuta HOM05D002702 ORTHO05D003416 1.1e-06 57.8 57 56.1
Thhalv10011362m.g Eutrema salsugineum HOM05D002702 ORTHO05D003416 1.1e-06 57.8 52 57.7
FAN12G2138 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.1e-06 57.8 60 56.7
FAN12G2960 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.1e-06 57.8 60 56.7
FAN17G2691 Fragaria x ananassa HOM05D002702 ORTHO05D003416 1.1e-06 57.8 60 56.7
Zm00001eb087600 Zea mays HOM05D000276 ORTHO05D003855 1.1e-06 57.8 49 63.3
Zm00001eb304800 Zea mays HOM05D002702 ORTHO05D003416 1.1e-06 57.8 49 63.3
Lj4g0025158 Lotus japonicus HOM05D002702 ORTHO05D003416 1.4e-06 57.4 45 60.0
Medtr7g086730 Medicago truncatula HOM05D002702 ORTHO05D003416 1.4e-06 57.4 86 41.9
Psat3g086160 Pisum sativum HOM05D002702 ORTHO05D015070 1.4e-06 57.4 53 58.5
TPR.G34790 Trifolium pratense HOM05D002702 ORTHO05D003416 1.4e-06 57.4 88 39.8
TPR.G9547 Trifolium pratense HOM05D002702 ORTHO05D003416 1.4e-06 57.4 51 60.8
BcaB03g11605 Brassica carinata HOM05D002702 ORTHO05D003416 1.9e-06 57.0 45 60.0
arahy.Tifrunner.gnm1.ann1.9I2R1K Arachis hypogaea HOM05D002702 ORTHO05D003416 2.4e-06 56.6 43 65.1
Psat5g080560 Pisum sativum HOM05D002702 ORTHO05D003416 4.2e-06 55.8 45 64.4
TPR.G35742 Trifolium pratense HOM05D002702 ORTHO05D015070 4.2e-06 55.8 46 58.7
Ca_04466_v3 Cicer arietinum L. HOM05D002702 ORTHO05D003416 5.4e-06 55.5 132 36.4
Phvul.001G106000 Phaseolus vulgaris HOM05D002702 ORTHO05D003416 5.4e-06 55.5 63 52.4
RcHm_v2.0_Chr7g0228131 Rosa chinensis HOM05D002702 ORTHO05D003416 7.1e-06 55.1 51 56.9
Haze_20120 Corylus avellana HOM05D002702 ORTHO05D003416 9.3e-06 54.7 43 65.1
FvH4_5g32090 Fragaria vesca HOM05D002702 ORTHO05D003416 9.3e-06 54.7 101 38.6
FAN18G3773 Fragaria x ananassa HOM05D002702 ORTHO05D003416 9.3e-06 54.7 101 38.6
MD04G1033900 Malus domestica HOM05D002702 ORTHO05D003416 9.3e-06 54.7 46 63.0
TPR.G16468 Trifolium pratense HOM05D002702 ORTHO05D015070 9.3e-06 54.7 46 54.3


User provided reference genes

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