Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_30541 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 7.5e-115 417.2 204 100.0
SEGI_14006 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 4.9e-114 414.5 204 99.0
MBI16_g07876_MAGBIO Magnolia biondii HOM05D003708 ORTHO05D004452 2.9e-98 362.1 204 82.4
Oeu020743.1 Olea europaea HOM05D003708 ORTHO05D004452 3.7e-98 361.7 204 82.8
Oeu029157.1 Olea europaea HOM05D003708 ORTHO05D004452 4.9e-98 361.3 204 82.8
Migut.N01253 Erythranthe guttata HOM05D003708 ORTHO05D004452 6.4e-98 360.9 204 81.9
Nn1g04897 Nelumbo nucifera HOM05D003708 ORTHO05D004452 6.4e-98 360.9 204 81.9
CDE05G0123 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 8.3e-98 360.5 204 81.4
TAR381G0899 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.1e-97 360.1 204 82.4
Cc02_g17290 Coffea canephora HOM05D003708 ORTHO05D004452 1.4e-97 359.8 204 82.8
GSVIVG01034280001 Vitis vinifera HOM05D003708 ORTHO05D004452 3.2e-97 358.6 204 81.4
Potri.009G119300 Populus trichocarpa HOM05D003708 ORTHO05D004452 4.1e-97 358.2 204 81.9
TAR381G0003 Trochodendron aralioides HOM05D003708 ORTHO05D004452 4.1e-97 358.2 204 81.9
ATR0585G004 Amborella trichopoda HOM05D003708 ORTHO05D004452 5.4e-97 357.8 204 82.4
Nn5g29691 Nelumbo nucifera HOM05D003708 ORTHO05D004452 5.4e-97 357.8 204 81.4
MSTRG.5405 Avicennia marina HOM05D003708 ORTHO05D004452 7.0e-97 357.5 204 80.9
GSVIVG01023813001 Vitis vinifera HOM05D003708 ORTHO05D004452 9.2e-97 357.1 204 80.9
Cpa.g.sc106.13 Carica papaya HOM05D003708 ORTHO05D004452 2.0e-96 355.9 204 81.4
Manes.04G073800 Manihot esculenta HOM05D003708 ORTHO05D004452 2.7e-96 355.5 204 81.4
Sabra09G0091800 Salix brachista HOM05D003708 ORTHO05D004452 2.7e-96 355.5 204 81.4
THA.LOC104799162 Tarenaya hassleriana HOM05D003708 ORTHO05D004452 2.7e-96 355.5 205 82.0
Lalb_Chr02g0156131 Lupinus albus HOM05D003708 ORTHO05D004452 3.5e-96 355.1 204 80.4
C09p64980 Brassica napus HOM05D003708 ORTHO05D004452 4.6e-96 354.8 204 80.9
BolC9t59326H Brassica oleracea HOM05D003708 ORTHO05D004452 4.6e-96 354.8 204 80.9
BraA10t44652Z Brassica rapa HOM05D003708 ORTHO05D004452 4.6e-96 354.8 204 80.9
PGR042G2933 Punica granatum HOM05D003708 ORTHO05D004452 4.6e-96 354.8 204 80.9
BcaB01g05447 Brassica carinata HOM05D003708 ORTHO05D004452 6.0e-96 354.4 204 80.4
A03p05250 Brassica napus HOM05D003708 ORTHO05D004452 6.0e-96 354.4 204 80.4
Duzib248G1007 Durio zibethinus HOM05D003708 ORTHO05D004452 6.0e-96 354.4 204 80.4
Eucgr.G01640 Eucalyptus grandis HOM05D003708 ORTHO05D004452 6.0e-96 354.4 204 81.4
Prupe.8G092300 Prunus persica HOM05D003708 ORTHO05D004452 6.0e-96 354.4 204 80.9
Sp6g31720 Schrenkiella parvula HOM05D003708 ORTHO05D004452 7.8e-96 354.0 204 80.9
Nitab4.5_0002169g0050 Nicotiana tabacum HOM05D003708 ORTHO05D004452 1.0e-95 353.6 204 80.9
CSS0004507 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.3e-95 353.2 204 80.9
Carub.0006s1041 Capsella rubella HOM05D003708 ORTHO05D004452 1.3e-95 353.2 204 80.4
CARHR201280 Cardamine hirsuta HOM05D003708 ORTHO05D004452 1.3e-95 353.2 204 80.9
Phvul.001G177300 Phaseolus vulgaris HOM05D003708 ORTHO05D004452 1.3e-95 353.2 204 80.4
Thecc.02G081300 Theobroma cacao HOM05D003708 ORTHO05D004452 1.3e-95 353.2 204 80.4
TAR636G0705 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.3e-95 353.2 204 79.9
A10p25890 Brassica napus HOM05D003708 ORTHO05D004452 1.7e-95 352.8 204 80.4
CAN.G1058.12 Capsicum annuum HOM05D003708 ORTHO05D004452 1.7e-95 352.8 204 81.4
Lj1g0019257 Lotus japonicus HOM05D003708 ORTHO05D004452 1.7e-95 352.8 204 79.9
AL3G26740 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 2.3e-95 352.4 204 80.4
Ca_24926_v3 Cicer arietinum L. HOM05D003708 ORTHO05D004452 2.3e-95 352.4 204 80.4
Thhalv10013369m.g Eutrema salsugineum HOM05D003708 ORTHO05D004452 2.3e-95 352.4 204 80.4
Lsat_1_v5_gn_7_90480 Lactuca sativa HOM05D003708 ORTHO05D004452 2.3e-95 352.4 204 79.9
Zm00001eb164230 Zea mays HOM05D003708 ORTHO05D004452 2.3e-95 352.4 203 79.3
Atru.chr5.3061 Acer truncatum HOM05D003708 ORTHO05D004452 3.0e-95 352.1 204 80.4
AT3G14390 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 3.0e-95 352.1 204 80.4
CANSAT56G1534 Cannabis sativa HOM05D003708 ORTHO05D004452 3.0e-95 352.1 204 80.4
CANSAT56G4510 Cannabis sativa HOM05D003708 ORTHO05D004452 3.0e-95 352.1 204 80.4
Dinv23495 Davidia involucrata HOM05D003708 ORTHO05D004452 3.0e-95 352.1 204 80.4
QL11p044250 Quercus lobata HOM05D003708 ORTHO05D004452 3.0e-95 352.1 203 79.8
Gohir.A13G033200 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.9e-95 351.7 204 79.4
Gohir.D13G031100 Gossypium hirsutum HOM05D003708 ORTHO05D004452 3.9e-95 351.7 204 79.4
Gorai.013G035500 Gossypium raimondii HOM05D003708 ORTHO05D004452 3.9e-95 351.7 204 79.4
ECA236G4291 Erigeron canadensis HOM05D003708 ORTHO05D004452 5.0e-95 351.3 204 79.9
SMO301G0021 Selaginella moellendorffii HOM05D003708 ORTHO05D004452 5.0e-95 351.3 204 78.4
Cfa011043 Carpinus fangiana HOM05D003708 ORTHO05D004452 6.6e-95 350.9 204 79.4
Haze_02339 Corylus avellana HOM05D003708 ORTHO05D004452 6.6e-95 350.9 204 79.4
Haze_24305 Corylus avellana HOM05D003708 ORTHO05D004452 6.6e-95 350.9 204 79.4
C03p06040 Brassica napus HOM05D003708 ORTHO05D004452 8.6e-95 350.5 204 79.9
BolC3t13114H Brassica oleracea HOM05D003708 ORTHO05D004452 8.6e-95 350.5 204 79.9
BraA03t09864Z Brassica rapa HOM05D003708 ORTHO05D004452 8.6e-95 350.5 204 79.9
Peaxi162Scf00684g00224 Petunia axillaris HOM05D003708 ORTHO05D004452 8.6e-95 350.5 210 80.5
Rhsim11G0179400 Rhododendron simsii HOM05D003708 ORTHO05D004452 8.6e-95 350.5 203 79.8
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 8.6e-95 350.5 204 80.4
CSS0012852 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.1e-94 350.1 204 80.4
Glyma.13G140700 Glycine max HOM05D003708 ORTHO05D004452 1.1e-94 350.1 204 79.4
Psat2g152880 Pisum sativum HOM05D003708 ORTHO05D004452 1.1e-94 350.1 204 79.4
Potri.004G157500 Populus trichocarpa HOM05D003708 ORTHO05D004452 1.1e-94 350.1 204 80.9
CSS0011384 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.5e-94 349.7 204 80.4
COL.COLO4_25976 Corchorus olitorius HOM05D003708 ORTHO05D004452 1.5e-94 349.7 204 79.4
MD10G1070600 Malus domestica HOM05D003708 ORTHO05D004452 1.5e-94 349.7 204 78.9
PGSC0003DMG400000737 Solanum tuberosum HOM05D003708 ORTHO05D004452 1.5e-94 349.7 204 79.4
Os02g0440000 Oryza sativa ssp. japonica HOM05D003708 ORTHO05D004452 1.9e-94 349.4 203 80.3
Zm00001eb406820 Zea mays HOM05D003708 ORTHO05D004452 1.9e-94 349.4 203 78.8
AT5G11880 Arabidopsis thaliana HOM05D003708 ORTHO05D004452 2.5e-94 349.0 204 79.9
arahy.Tifrunner.gnm1.ann1.F2CJ1Q Arachis hypogaea HOM05D003708 ORTHO05D004452 2.5e-94 349.0 204 79.9
arahy.Tifrunner.gnm1.ann1.U6BYIQ Arachis hypogaea HOM05D003708 ORTHO05D004452 2.5e-94 349.0 204 79.4
ClCG11G004220 Citrullus lanatus HOM05D003708 ORTHO05D004452 2.5e-94 349.0 204 79.4
VMungo1383G2129 Vigna mungo HOM05D003708 ORTHO05D004452 2.5e-94 349.0 204 78.4
EL10Ac9g21697 Beta vulgaris HOM05D003708 ORTHO05D004452 3.3e-94 348.6 204 78.9
Haze_02345 Corylus avellana HOM05D003708 ORTHO05D004452 3.3e-94 348.6 204 78.9
RcHm_v2.0_Chr6g0265651 Rosa chinensis HOM05D003708 ORTHO05D004452 3.3e-94 348.6 204 78.4
Carub.0001s3063 Capsella rubella HOM05D003708 ORTHO05D004452 4.3e-94 348.2 204 78.9
Medtr5g022700 Medicago truncatula HOM05D003708 ORTHO05D004452 4.3e-94 348.2 204 79.4
Peaxi162Scf00016g00522 Petunia axillaris HOM05D003708 ORTHO05D004452 4.3e-94 348.2 204 80.4
TPR.G10514 Trifolium pratense HOM05D003708 ORTHO05D004452 4.3e-94 348.2 204 78.9
Glyma.19G182000 Glycine max HOM05D003708 ORTHO05D004452 5.6e-94 347.8 204 78.4
Gohir.D12G029400 Gossypium hirsutum HOM05D003708 ORTHO05D004452 5.6e-94 347.8 204 79.4
Solyc01g109850.3 Solanum lycopersicum HOM05D003708 ORTHO05D004452 5.6e-94 347.8 204 79.4
Aa31LG3G15320 Aethionema arabicum HOM05D003708 ORTHO05D004452 7.3e-94 347.4 204 79.4
DCAR_009121 Daucus carota HOM05D003708 ORTHO05D004452 7.3e-94 347.4 204 78.4
FvH4_2g09380 Fragaria vesca HOM05D003708 ORTHO05D004452 7.3e-94 347.4 204 78.9
Gorai.008G030100 Gossypium raimondii HOM05D003708 ORTHO05D004452 7.3e-94 347.4 204 78.9
SEGI_13472 Sequoiadendron giganteum HOM05D003708 ORTHO05D004452 7.3e-94 347.4 204 79.4
Ah.01g006350 Amaranthus hybridus HOM05D003708 ORTHO05D004452 9.5e-94 347.1 204 79.9
TWI79G1570 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 9.5e-94 347.1 204 79.9
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 1.2e-93 346.7 204 79.4
AL6G22640 Arabidopsis lyrata HOM05D003708 ORTHO05D004452 1.2e-93 346.7 204 79.9
Ciclev10028284m.g Citrus clementina HOM05D003708 ORTHO05D004452 1.2e-93 346.7 204 78.4
MELO3C023315.2 Cucumis melo HOM05D003708 ORTHO05D004452 1.2e-93 346.7 204 78.4
CsaV3_2G014950 Cucumis sativus L. HOM05D003708 ORTHO05D004452 1.2e-93 346.7 204 78.4
Glyma.03G181200 Glycine max HOM05D003708 ORTHO05D004452 1.2e-93 346.7 204 77.9
HanXRQChr04g0127831 Helianthus annuus HOM05D003708 ORTHO05D004452 1.2e-93 346.7 203 78.3
Hund06256 Selenicereus undatus HOM05D003708 ORTHO05D004452 1.2e-93 346.7 202 80.2
Sopen01g052040 Solanum pennellii HOM05D003708 ORTHO05D004452 1.2e-93 346.7 204 79.4
Lalb_Chr20g0112711 Lupinus albus HOM05D003708 ORTHO05D004452 1.6e-93 346.3 204 77.5
Sed0019329 Sechium edule HOM05D003708 ORTHO05D004452 1.6e-93 346.3 204 78.4
CiPaw.06G133600 Carya illinoinensis HOM05D003708 ORTHO05D004452 3.6e-93 345.1 204 78.9
Sed0010943 Sechium edule HOM05D003708 ORTHO05D004452 3.6e-93 345.1 204 78.4
unitig_8.g4754 Utricularia gibba HOM05D003708 ORTHO05D004452 3.6e-93 345.1 200 81.0
AUR62011292 Chenopodium quinoa HOM05D003708 ORTHO05D004452 4.7e-93 344.7 204 78.4
AUR62016767 Chenopodium quinoa HOM05D003708 ORTHO05D004452 4.7e-93 344.7 204 78.4
FAN15G1456 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.8e-92 342.8 216 75.0
FAN20G3010 Fragaria x ananassa HOM05D003708 ORTHO05D004452 1.8e-92 342.8 216 75.0
MD05G1063100 Malus domestica HOM05D003708 ORTHO05D004452 1.8e-92 342.8 204 77.5
FAN27G1867 Fragaria x ananassa HOM05D003708 ORTHO05D004452 2.3e-92 342.4 216 75.5
ECA246G0885 Erigeron canadensis HOM05D003708 ORTHO05D004452 3.1e-92 342.0 204 77.9
FAN24G3295 Fragaria x ananassa HOM05D003708 ORTHO05D004452 4.0e-92 341.7 216 75.0
TWI31G0810 Tripterygium wilfordii HOM05D003708 ORTHO05D004452 5.2e-92 341.3 204 77.9
PSO339G0466 Papaver somniferum HOM05D003708 ORTHO05D004452 1.5e-91 339.7 204 76.5
PSO384G0323 Papaver somniferum HOM05D003708 ORTHO05D004452 7.5e-91 337.4 204 76.5
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 3.7e-90 335.1 204 76.0
Mapoly0005s0182 Marchantia polymorpha HOM05D003708 ORTHO05D004452 1.7e-87 326.2 204 73.0
Pp3c23_16600 Physcomitrium patens HOM05D003708 ORTHO05D004452 5.1e-87 324.7 205 72.7
CSS0015853 Camellia sinensis var. sinensis HOM05D003708 ORTHO05D004452 1.9e-86 322.8 203 76.4
Lj5A195T74 Lonicera japonica HOM05D003708 ORTHO05D004452 3.3e-86 322.0 204 75.5
Rhsim01G0265100 Rhododendron simsii HOM05D003708 ORTHO05D004452 1.1e-84 317.0 181 81.8
Ah.01g019180 Amaranthus hybridus HOM05D003708 ORTHO05D004452 5.2e-84 314.7 177 82.5
QL11p044193 Quercus lobata HOM05D003708 ORTHO05D004452 3.4e-83 312.0 177 81.9
Pp3c24_7340 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.3e-82 310.1 205 70.2
Pp3c24_7341 Physcomitrium patens HOM05D003708 ORTHO05D004452 1.3e-82 310.1 205 70.2
BcaC04g19189 Brassica carinata HOM05D003708 ORTHO05D004452 1.4e-81 306.6 204 72.5
vmacro02084 Vaccinium macrocarpon HOM05D003708 ORTHO05D004452 1.3e-79 300.1 202 71.3
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 4.3e-78 295.0 204 70.1
Actinidia00541 Actinidia chinensis HOM05D003708 ORTHO05D004452 9.0e-68 260.8 198 67.7
TAR628G0623 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.5e-67 260.0 201 64.7
CBR_g46282 Chara braunii HOM05D003708 ORTHO05D004452 1.3e-61 240.4 160 70.6
Nitab4.5_0008925g0010 Nicotiana tabacum HOM05D003708 ORTHO05D004452 8.1e-61 237.7 193 63.7
SGA_v2.0_scaffold5G02835 Striga asiatica HOM05D003708 ORTHO05D004452 1.4e-60 236.9 204 59.8
Gohir.A12G043000 Gossypium hirsutum HOM05D003708 ORTHO05D004452 6.0e-56 221.5 148 71.6
Lj9C375G10 Lonicera japonica HOM05D002765 ORTHO05D003083 1.0e-55 220.7 202 55.0
Nitab4.5_0000308g0370 Nicotiana tabacum HOM05D003708 ORTHO05D004452 2.7e-48 196.1 110 78.2
Hund00244 Selenicereus undatus HOM05D003708 ORTHO05D004452 7.9e-48 194.5 275 43.6
HPP92_001592 Vanilla planifolia HOM05D003708 ORTHO05D004452 1.0e-47 194.1 114 79.8
BcaB01g05446 Brassica carinata HOM05D003708 ORTHO05D004452 2.9e-42 176.0 106 77.4
Peaxi162Scf00286g00237 Petunia axillaris HOM05D003708 ORTHO05D004452 1.1e-30 137.5 81 79.0
TAR628G0633 Trochodendron aralioides HOM05D003708 ORTHO05D004452 2.9e-26 122.9 201 40.8
CDE11G0056 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 7.4e-22 108.2 64 79.7
CDE11G0718 Ceratophyllum demersum HOM05D003708 ORTHO05D004452 1.4e-20 104.0 76 61.8
vmacro02085 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 1.3e-18 97.4 128 50.8
Dinv42045 Davidia involucrata HOM05D003708 ORTHO05D004452 3.2e-17 92.8 50 84.0
PRCOL_00005267 Prasinoderma coloniale HOM05D003708 ORTHO05D004452 5.7e-14 82.0 200 31.5
MCO09G633 Micromonas commoda HOM05D003708 ORTHO05D004452 3.7e-13 79.3 208 32.2
Glyma.10G053602 Glycine max HOM05D003708 ORTHO05D004452 8.2e-13 78.2 46 69.6
Peaxi162Scf01320g00019 Petunia axillaris HOM05D000176 ORTHO05D000106 7.0e-12 75.1 74 50.0
CBR_g46280 Chara braunii HOM05D003708 ORTHO05D004452 2.7e-11 73.2 54 63.0
vmacro02086 Vaccinium macrocarpon HOM05D001037 ORTHO05D000888 8.5e-10 68.2 105 42.9
Lj6C687T4 Lonicera japonica HOM05D003708 ORTHO05D004452 4.2e-09 65.9 38 71.1
VMungo1215G0191 Vigna mungo HOM05D000113 ORTHO05D005275 4.2e-09 65.9 36 86.1
MD11G1199400 Malus domestica HOM05D003708 ORTHO05D004452 9.4e-09 64.7 32 84.4
GSVIVG01029866001 Vitis vinifera HOM05D003708 ORTHO05D004452 4.7e-08 62.4 72 48.6
TAR628G0529 Trochodendron aralioides HOM05D003708 ORTHO05D004452 1.4e-07 60.8 201 29.9
arahy.Tifrunner.gnm1.ann1.EPLA3D Arachis hypogaea HOM05D003708 ORTHO05D004452 8.8e-07 58.2 35 68.6


User provided reference genes

Program Settings