Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_28566 Sequoiadendron giganteum HOM05D004601 ORTHO05D005806 0.0e+00 1426.8 696 100.0
SEGI_35863 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 2.8e-161 573.2 429 71.1
SEGI_17545 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 2.9e-150 536.6 418 70.3
SEGI_35495 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 2.9e-150 536.6 510 59.6
SEGI_01165 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 3.7e-145 519.6 508 58.9
SEGI_34916 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 3.2e-141 506.5 392 69.6
SEGI_12076 Sequoiadendron giganteum HOM05D009239 ORTHO05D007837 4.1e-112 409.8 501 51.5
SEGI_23597 Sequoiadendron giganteum HOM05D009239 ORTHO05D005806 1.2e-108 398.3 507 49.5
SEGI_08493 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 5.3e-96 356.3 203 87.2
SEGI_12853 Sequoiadendron giganteum HOM05D006483 ORTHO05D007837 7.7e-95 352.4 203 86.2
Ciclev10007283m.g Citrus clementina HOM05D004601 ORTHO05D005806 2.2e-94 350.9 252 63.5
Potri.018G141900 Populus trichocarpa HOM05D004601 ORTHO05D005806 1.5e-93 348.2 268 61.6
TWI63G1718 Tripterygium wilfordii HOM05D004601 ORTHO05D005806 1.8e-91 341.3 255 62.4
TAR383G0412 Trochodendron aralioides HOM05D004601 ORTHO05D005806 1.8e-91 341.3 252 63.1
Prupe.1G074600 Prunus persica HOM05D004601 ORTHO05D005806 2.6e-90 337.4 262 59.2
Sed0026596 Sechium edule HOM05D004601 ORTHO05D005806 4.4e-90 336.7 242 65.3
CSS0021444 Camellia sinensis var. sinensis HOM05D004601 ORTHO05D005806 5.7e-90 336.3 255 61.2
Actinidia02499 Actinidia chinensis HOM05D004601 ORTHO05D005806 9.8e-90 335.5 252 63.5
Nn8g40736 Nelumbo nucifera HOM05D004601 ORTHO05D005806 9.8e-90 335.5 256 63.7
CsaV3_2G008760 Cucumis sativus L. HOM05D004601 ORTHO05D005806 1.3e-89 335.1 246 62.2
MELO3C003972.2 Cucumis melo HOM05D004601 ORTHO05D005806 2.2e-89 334.3 247 62.8
Sabra18G0116000 Salix brachista HOM05D004601 ORTHO05D005806 2.2e-89 334.3 261 61.3
PSO170G3696 Papaver somniferum HOM05D004601 ORTHO05D005806 3.7e-89 333.6 252 61.9
Duzib150G1331 Durio zibethinus HOM05D004601 ORTHO05D005806 8.3e-89 332.4 255 60.0
Cfa013456 Carpinus fangiana HOM05D004601 ORTHO05D005806 1.1e-88 332.0 251 62.5
ATR0626G236 Amborella trichopoda HOM05D004601 ORTHO05D005806 1.8e-88 331.3 242 63.6
Thecc.09G186600 Theobroma cacao HOM05D004601 ORTHO05D005806 2.4e-88 330.9 255 60.0
Gohir.A13G208300 Gossypium hirsutum HOM05D004601 ORTHO05D005806 4.1e-88 330.1 255 60.0
MBI16_g47869_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 4.1e-88 330.1 260 62.3
MD16G1247900 Malus domestica HOM05D004601 ORTHO05D005806 5.4e-88 329.7 242 63.2
Gorai.013G243100 Gossypium raimondii HOM05D004601 ORTHO05D005806 1.6e-87 328.2 255 59.6
CANSAT11G0507 Cannabis sativa HOM05D004601 ORTHO05D005806 3.5e-87 327.0 252 58.7
Cpa.g.sc95.10 Carica papaya HOM05D004601 ORTHO05D005806 3.5e-87 327.0 246 61.8
Medtr2g038030 Medicago truncatula HOM05D004601 ORTHO05D005806 3.5e-87 327.0 255 58.4
CiPaw.08G032200 Carya illinoinensis HOM05D004601 ORTHO05D005806 4.5e-87 326.6 248 62.9
TPR.G7576 Trifolium pratense HOM05D004601 ORTHO05D000001 4.5e-87 326.6 255 59.6
Phvul.009G235800 Phaseolus vulgaris HOM05D004601 ORTHO05D005806 7.7e-87 325.9 255 58.0
Gohir.D13G212700 Gossypium hirsutum HOM05D004601 ORTHO05D005806 1.0e-86 325.5 255 59.2
Cc06_g20790 Coffea canephora HOM05D004601 ORTHO05D005806 1.3e-86 325.1 252 63.1
PSO063G2966 Papaver somniferum HOM05D004601 ORTHO05D005806 1.3e-86 325.1 262 58.4
GSVIVG01029314001 Vitis vinifera HOM05D004601 ORTHO05D005806 2.3e-86 324.3 255 60.0
FvH4_4g07160 Fragaria vesca HOM05D004601 ORTHO05D005806 2.9e-86 323.9 248 60.5
Manes.14G159112 Manihot esculenta HOM05D004601 ORTHO05D005806 2.9e-86 323.9 252 60.3
Dinv25455 Davidia involucrata HOM05D004601 ORTHO05D005806 3.8e-86 323.6 255 58.8
Aqoxy7G02847 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 6.6e-86 322.8 242 61.6
FAN17G2239 Fragaria x ananassa HOM05D004601 ORTHO05D005806 6.6e-86 322.8 257 59.1
VMungo1309G1314 Vigna mungo HOM05D004601 ORTHO05D005806 8.6e-86 322.4 255 56.9
Lj6g0004756 Lotus japonicus HOM05D004601 ORTHO05D005806 1.5e-85 321.6 255 58.0
Ca_02111_v3 Cicer arietinum L. HOM05D004601 ORTHO05D005806 2.5e-85 320.9 248 59.3
Psat1g144400 Pisum sativum HOM05D004601 ORTHO05D005806 2.5e-85 320.9 255 58.4
Glyma.15G166700 Glycine max HOM05D004601 ORTHO05D005806 4.2e-85 320.1 255 58.0
Sp6g18890 Schrenkiella parvula HOM05D004601 ORTHO05D005806 1.6e-84 318.2 268 56.3
AL8G33090 Arabidopsis lyrata HOM05D004601 ORTHO05D005806 2.1e-84 317.8 268 56.7
Carub.0008s1767 Capsella rubella HOM05D004601 ORTHO05D005806 2.8e-84 317.4 268 56.3
Zm00001eb071490 Zea mays HOM05D004601 ORTHO05D005806 2.8e-84 317.4 242 60.3
AT5G57160 Arabidopsis thaliana HOM05D004601 ORTHO05D005806 4.7e-84 316.6 268 56.7
Thhalv10012474m.g Eutrema salsugineum HOM05D004601 ORTHO05D005806 6.1e-84 316.2 268 56.3
RcHm_v2.0_Chr4g0399311 Rosa chinensis HOM05D004601 ORTHO05D005806 1.8e-83 314.7 246 58.9
BcaC04g19998 Brassica carinata HOM05D004601 ORTHO05D005806 3.0e-83 313.9 268 56.3
Hma1.2p1_0235F.1_g098680 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 8.9e-83 312.4 243 62.1
arahy.Tifrunner.gnm1.ann1.BQ8TF8 Arachis hypogaea HOM05D004601 ORTHO05D005806 1.5e-82 311.6 255 56.9
A10p14520 Brassica napus HOM05D004601 ORTHO05D005806 1.5e-82 311.6 269 56.1
BcaC04g19995 Brassica carinata HOM05D004601 ORTHO05D005806 2.0e-82 311.2 269 56.5
C09p48970 Brassica napus HOM05D004601 ORTHO05D005806 2.0e-82 311.2 269 56.5
BolC9t57749H Brassica oleracea HOM05D004601 ORTHO05D005806 2.0e-82 311.2 269 56.1
CAN.G285.4 Capsicum annuum HOM05D004601 ORTHO05D005806 2.0e-82 311.2 255 58.0
CARHR270950 Cardamine hirsuta HOM05D004601 ORTHO05D005806 2.6e-82 310.8 268 54.9
CDE07G0894 Ceratophyllum demersum HOM05D004601 ORTHO05D005806 2.6e-82 310.8 242 61.2
Eucgr.C00108 Eucalyptus grandis HOM05D004601 ORTHO05D005806 2.6e-82 310.8 244 60.7
Migut.J00793 Erythranthe guttata HOM05D004601 ORTHO05D005806 4.4e-82 310.1 255 58.0
HPP92_021964 Vanilla planifolia HOM05D004601 ORTHO05D005806 9.8e-82 308.9 242 57.0
BraA10t43541Z Brassica rapa HOM05D004601 ORTHO05D005806 3.7e-81 307.0 270 55.9
Lalb_Chr08g0231931 Lupinus albus HOM05D004601 ORTHO05D005806 4.9e-81 306.6 255 56.5
PGR142G2375 Punica granatum HOM05D004601 ORTHO05D005806 6.3e-81 306.2 263 57.4
PGR142G4125 Punica granatum HOM05D004601 ORTHO05D005806 6.3e-81 306.2 263 57.4
Sc16g0011160 Simmondsia chinensis HOM05D004601 ORTHO05D005806 2.4e-80 304.3 263 57.4
Sopen07g006920 Solanum pennellii HOM05D004601 ORTHO05D005806 7.0e-80 302.8 241 58.9
MSTRG.5939 Avicennia marina HOM05D004601 ORTHO05D005806 9.2e-80 302.4 284 55.3
Lsat_1_v5_gn_8_69120 Lactuca sativa HOM05D004601 ORTHO05D005806 1.6e-79 301.6 243 60.5
EL10Ac4g10170 Beta vulgaris HOM05D004601 ORTHO05D005806 3.5e-79 300.4 257 58.0
ECA236G0938 Erigeron canadensis HOM05D004601 ORTHO05D005806 5.9e-79 299.7 255 56.5
HanXRQChr05g0141031 Helianthus annuus HOM05D004601 ORTHO05D005806 1.0e-78 298.9 255 56.5
THA.LOC104817773 Tarenaya hassleriana HOM05D004601 ORTHO05D005806 9.5e-77 292.4 242 58.3
FAN22G2150 Fragaria x ananassa HOM05D004601 ORTHO05D005806 1.0e-75 288.9 242 56.6
AUR62039835 Chenopodium quinoa HOM05D004601 ORTHO05D005806 6.8e-75 286.2 249 56.2
Ah.06g194430 Amaranthus hybridus HOM05D004601 ORTHO05D005806 4.4e-74 283.5 245 56.3
AagrBONN_evm.TU.Sc2ySwM_228.1820 Anthoceros agrestis HOM05D004601 ORTHO05D005806 1.3e-73 282.0 243 57.6
Pp3c14_5920 Physcomitrium patens HOM05D004601 ORTHO05D005806 2.4e-72 277.7 243 56.4
SHI03064 Sapria himalayana HOM05D004601 ORTHO05D005806 4.1e-72 276.9 258 53.1
Mapoly0001s0137 Marchantia polymorpha HOM05D004601 ORTHO05D005806 1.6e-71 275.0 267 54.3
AUR62000175 Chenopodium quinoa HOM05D004601 ORTHO05D005806 3.0e-70 270.8 248 53.6
Aa31LG3G13060 Aethionema arabicum HOM05D004601 ORTHO05D005806 4.3e-69 266.9 268 50.7
Lj7A622G14 Lonicera japonica HOM05D004601 ORTHO05D005806 2.8e-68 264.2 242 55.0
Rhsim03G0267200 Rhododendron simsii HOM05D004601 ORTHO05D005806 1.3e-65 255.4 255 51.0
vmacro05994 Vaccinium macrocarpon HOM05D004601 ORTHO05D005806 1.3e-65 255.4 280 47.9
Nitab4.5_0000056g0060 Nicotiana tabacum HOM05D004601 ORTHO05D005806 2.4e-64 251.1 267 50.6
ClCG11G011720 Citrullus lanatus HOM05D004601 ORTHO05D005806 4.1e-64 250.4 250 51.6
SMO144G0133 Selaginella moellendorffii HOM05D004601 ORTHO05D005806 6.0e-63 246.5 242 52.1
SEGI_02211 Sequoiadendron giganteum HOM05D009239 ORTHO05D026139 5.1e-62 243.4 262 53.8
FAN12G1367 Fragaria x ananassa HOM05D004601 ORTHO05D005806 1.1e-61 242.3 246 48.4
SEGI_19161 Sequoiadendron giganteum HOM05D009239 ORTHO05D014795 5.6e-61 240.0 260 55.0
Hma1.2p1_0235F.1_g098690 Hydrangea macrophylla HOM05D004601 ORTHO05D005806 1.4e-59 235.3 253 49.8
BcaB08g35989 Brassica carinata HOM05D004601 ORTHO05D005806 3.4e-58 230.7 257 49.0
Glyma.09G060132 Glycine max HOM05D004601 ORTHO05D005806 3.4e-58 230.7 196 54.6
SEGI_25918 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 1.6e-52 211.8 120 86.7
Psat5g051520 Pisum sativum HOM05D004601 ORTHO05D005806 2.6e-50 204.5 167 55.1
COL.COLO4_06398 Corchorus olitorius HOM05D004601 ORTHO05D005806 3.2e-48 197.6 255 42.4
Solyc07g018000.3 Solanum lycopersicum HOM05D004601 ORTHO05D005806 4.2e-48 197.2 180 52.8
SEGI_05454 Sequoiadendron giganteum HOM05D001144 ORTHO05D003139 7.1e-48 196.4 282 47.2
SEGI_11395 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 1.7e-46 191.8 105 88.6
Peaxi162Scf00231g01115 Petunia axillaris HOM05D004601 ORTHO05D005806 3.4e-42 177.6 192 51.6
SGA_v2.0_scaffold112G31593 Striga asiatica HOM05D004601 ORTHO05D005806 8.4e-41 172.9 268 38.8
arahy.Tifrunner.gnm1.ann1.8TE3EA Arachis hypogaea HOM05D004601 ORTHO05D005806 2.1e-39 168.3 131 61.1
SEGI_40446 Sequoiadendron giganteum HOM05D007858 ORTHO05D000002 3.5e-39 167.5 240 45.4
SalBow6G1386 Salvia bowleyana HOM05D004601 ORTHO05D005806 8.7e-38 162.9 162 49.4
Oeu019558.1 Olea europaea HOM05D004601 ORTHO05D005806 1.9e-37 161.8 131 61.1
Aqoxy295s002 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 8.1e-36 156.4 140 52.9
arahy.Tifrunner.gnm1.ann1.LL4FRQ Arachis hypogaea HOM05D004601 ORTHO05D005806 8.1e-36 156.4 152 47.4
AagrBONN_evm.TU.Sc2ySwM_228.3225 Anthoceros agrestis HOM05D004601 ORTHO05D005806 6.9e-35 153.3 245 32.7
MBI16_g10345_MAGBIO Magnolia biondii HOM05D004601 ORTHO05D005806 6.0e-31 140.2 270 34.1
Aqoxy295s003 Aquilegia oxysepala HOM05D004601 ORTHO05D005806 3.1e-27 127.9 78 73.1
DCAR_020147 Daucus carota HOM05D004601 ORTHO05D005806 5.8e-26 123.6 210 35.2
Atru.chr7.956 Acer truncatum HOM05D004601 ORTHO05D005806 6.0e-23 113.6 63 81.0
SEGI_26916 Sequoiadendron giganteum HOM05D000181 ORTHO05D014795 1.9e-21 108.6 74 73.0
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-19 102.4 71 59.2
Rhsim01G0115200 Rhododendron simsii HOM05D004601 ORTHO05D005806 2.4e-19 101.7 238 30.3
SEGI_19575 Sequoiadendron giganteum HOM05D009239 ORTHO05D026139 3.8e-17 94.4 84 52.4
SEGI_24147 Sequoiadendron giganteum HOM05D003314 ORTHO05D026139 8.4e-17 93.2 82 52.4
SEGI_25655 Sequoiadendron giganteum HOM05D009239 ORTHO05D007201 1.9e-16 92.0 97 51.5
SEGI_02842 Sequoiadendron giganteum HOM05D006957 ORTHO05D008647 4.2e-16 90.9 99 51.5
SEGI_25227 Sequoiadendron giganteum HOM05D009239 ORTHO05D015310 9.3e-16 89.7 92 48.9
SEGI_34481 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 9.3e-16 89.7 82 53.7
SEGI_37560 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.0e-14 86.3 84 48.8
SEGI_40002 Sequoiadendron giganteum HOM05D009239 ORTHO05D000002 1.0e-14 86.3 82 53.7
SalBow7G2616 Salvia bowleyana HOM05D005568 ORTHO05D006940 1.8e-14 85.5 64 56.2
PRCOL_00001076 Prasinoderma coloniale HOM05D004601 ORTHO05D005806 3.0e-14 84.7 270 23.7
RhsimUnG0137600 Rhododendron simsii HOM05D004601 ORTHO05D005806 8.7e-14 83.2 222 30.6
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 8.2e-12 76.6 85 45.9
SEGI_41596 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 6.9e-11 73.6 295 28.1
Cre10.g433550 Chlamydomonas reinhardtii HOM05D004601 ORTHO05D005806 1.5e-10 72.4 55 60.0
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 1.5e-10 72.4 75 46.7
SEGI_39880 Sequoiadendron giganteum HOM05D009239 ORTHO05D008152 2.0e-10 72.0 84 45.2
SEGI_08500 Sequoiadendron giganteum HOM05D000238 ORTHO05D001156 1.3e-09 69.3 75 50.7
Cfa023642 Carpinus fangiana HOM05D004601 ORTHO05D005806 3.8e-09 67.8 256 27.0
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 3.6e-07 61.2 77 48.1
SEGI_37216 Sequoiadendron giganteum HOM05D015854 ORTHO05D005133 1.4e-06 59.3 81 38.3
SEGI_08556 Sequoiadendron giganteum HOM05D009239 ORTHO05D017074 3.0e-06 58.2 96 39.6
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 6.7e-06 57.0 91 44.0
SEGI_05058 Sequoiadendron giganteum HOM05D001582 ORTHO05D005133 8.8e-06 56.6 73 38.4
SEGI_38937 Sequoiadendron giganteum HOM05D001582 ORTHO05D005133 8.8e-06 56.6 73 38.4


User provided reference genes

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