Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_25287 Sequoiadendron giganteum HOM05D003112 ORTHO05D003660 2.0e-59 232.3 119 100.0
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.5e-30 135.6 94 70.2
AagrBONN_evm.TU.Sc2ySwM_368.2484 Anthoceros agrestis HOM05D003112 ORTHO05D003660 2.1e-29 132.5 83 75.9
SMO347G0250 Selaginella moellendorffii HOM05D003112 ORTHO05D003660 3.1e-28 128.6 83 75.9
CDE09G0390 Ceratophyllum demersum HOM05D003112 ORTHO05D003660 9.0e-28 127.1 118 63.6
Ah.04g163950 Amaranthus hybridus HOM05D003112 ORTHO05D003660 3.4e-27 125.2 86 72.1
Dinv27120 Davidia involucrata HOM05D003112 ORTHO05D003660 3.4e-27 125.2 120 59.2
ATR0787G215 Amborella trichopoda HOM05D003112 ORTHO05D003660 4.5e-27 124.8 84 73.8
Nn3g19795 Nelumbo nucifera HOM05D003112 ORTHO05D003660 4.5e-27 124.8 86 70.9
HanXRQChr01g0023041 Helianthus annuus HOM05D003112 ORTHO05D003660 1.0e-26 123.6 87 72.4
Manes.03G158100 Manihot esculenta HOM05D003112 ORTHO05D003660 1.3e-26 123.2 86 72.1
Pp3c4_11270 Physcomitrium patens HOM05D003112 ORTHO05D003660 1.3e-26 123.2 87 69.0
HPP92_007614 Vanilla planifolia HOM05D003112 ORTHO05D003660 1.3e-26 123.2 117 57.3
ATR0787G024 Amborella trichopoda HOM05D003112 ORTHO05D003660 2.2e-26 122.5 78 78.2
TAR633G1760 Trochodendron aralioides HOM05D003112 ORTHO05D003660 2.2e-26 122.5 86 69.8
vmacro08560 Vaccinium macrocarpon HOM05D003112 ORTHO05D003660 3.8e-26 121.7 104 64.4
HanXRQChr14g0434771 Helianthus annuus HOM05D003112 ORTHO05D003660 5.0e-26 121.3 84 71.4
Thecc.04G265900 Theobroma cacao HOM05D003112 ORTHO05D003660 5.0e-26 121.3 86 70.9
TAR362G0704 Trochodendron aralioides HOM05D003112 ORTHO05D003660 5.0e-26 121.3 105 60.0
CSS0035703 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 6.5e-26 120.9 85 72.9
HPP92_026398 Vanilla planifolia HOM05D003112 ORTHO05D003660 6.5e-26 120.9 84 69.0
Cfa014790 Carpinus fangiana HOM05D003112 ORTHO05D003660 8.4e-26 120.6 86 70.9
AUR62019663 Chenopodium quinoa HOM05D003112 ORTHO05D003660 8.4e-26 120.6 84 71.4
DCAR_027353 Daucus carota HOM05D003112 ORTHO05D003660 8.4e-26 120.6 121 54.5
Gohir.D09G228100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 8.4e-26 120.6 86 69.8
Gorai.006G250800 Gossypium raimondii HOM05D003112 ORTHO05D003660 8.4e-26 120.6 86 69.8
Mapoly0081s0061 Marchantia polymorpha HOM05D003112 ORTHO05D003660 8.4e-26 120.6 65 86.2
Rhsim04G0171200 Rhododendron simsii HOM05D003112 ORTHO05D003660 8.4e-26 120.6 84 72.6
Atru.chr4.1907 Acer truncatum HOM05D003112 ORTHO05D003660 1.1e-25 120.2 85 70.6
CAN.G638.35 Capsicum annuum HOM05D003112 ORTHO05D003660 1.1e-25 120.2 121 56.2
CiPaw.01G177200 Carya illinoinensis HOM05D003112 ORTHO05D003660 1.1e-25 120.2 114 55.3
Gohir.A09G227100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.1e-25 120.2 86 69.8
MBI10_g16830_MAGBIO Magnolia biondii HOM05D003112 ORTHO05D003660 1.1e-25 120.2 86 70.9
Hund24873 Selenicereus undatus HOM05D003112 ORTHO05D003660 1.1e-25 120.2 86 67.4
Duzib151G0757 Durio zibethinus HOM05D003112 ORTHO05D003660 1.4e-25 119.8 86 69.8
Nitab4.5_0000592g0470 Nicotiana tabacum HOM05D003112 ORTHO05D003660 1.4e-25 119.8 104 61.5
Os02g0125100 Oryza sativa ssp. japonica HOM05D003112 ORTHO05D003660 1.4e-25 119.8 78 74.4
PSO832G1505 Papaver somniferum HOM05D003112 ORTHO05D003660 1.4e-25 119.8 86 68.6
Aqoxy5G00139 Aquilegia oxysepala HOM05D003112 ORTHO05D003660 1.9e-25 119.4 78 75.6
CANSAT78G1988 Cannabis sativa HOM05D003112 ORTHO05D003660 1.9e-25 119.4 86 68.6
AUR62013948 Chenopodium quinoa HOM05D003112 ORTHO05D003660 1.9e-25 119.4 84 70.2
QL06p021218 Quercus lobata HOM05D003112 ORTHO05D003660 1.9e-25 119.4 86 68.6
Glyma.14G217300 Glycine max HOM05D003112 ORTHO05D003660 2.5e-25 119.0 118 55.1
MD16G1227200 Malus domestica HOM05D003112 ORTHO05D003660 2.5e-25 119.0 84 70.2
Nitab4.5_0002210g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 2.5e-25 119.0 103 62.1
Solyc03g005730.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 2.5e-25 119.0 119 54.6
Sopen03g001740 Solanum pennellii HOM05D003112 ORTHO05D003660 2.5e-25 119.0 119 54.6
PGSC0003DMG400013459 Solanum tuberosum HOM05D003112 ORTHO05D003660 2.5e-25 119.0 119 54.6
TWI73G0266 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 2.5e-25 119.0 86 70.9
Cc03_g06410 Coffea canephora HOM05D003112 ORTHO05D003660 3.2e-25 118.6 120 55.8
Eucgr.H02913 Eucalyptus grandis HOM05D003112 ORTHO05D003660 3.2e-25 118.6 78 75.6
Lsat_1_v5_gn_2_41240 Lactuca sativa HOM05D003112 ORTHO05D003660 3.2e-25 118.6 84 69.0
Oeu061871.1 Olea europaea HOM05D003112 ORTHO05D003660 3.2e-25 118.6 109 58.7
MELO3C003344.2 Cucumis melo HOM05D003112 ORTHO05D003660 4.2e-25 118.2 86 67.4
Zm00001eb230780 Zea mays HOM05D003112 ORTHO05D003660 4.2e-25 118.2 78 73.1
ClCG09G012580 Citrullus lanatus HOM05D003112 ORTHO05D003660 5.5e-25 117.9 86 67.4
COL.COLO4_15976 Corchorus olitorius HOM05D003112 ORTHO05D003660 5.5e-25 117.9 70 78.6
FAN22G1113 Fragaria x ananassa HOM05D003112 ORTHO05D003660 5.5e-25 117.9 82 67.1
PSO764G0258 Papaver somniferum HOM05D003112 ORTHO05D003660 5.5e-25 117.9 86 68.6
Psat6g107560 Pisum sativum HOM05D003112 ORTHO05D003660 5.5e-25 117.9 86 67.4
Potri.010G065100 Populus trichocarpa HOM05D003112 ORTHO05D003660 5.5e-25 117.9 86 69.8
Sed0016595 Sechium edule HOM05D003112 ORTHO05D003660 5.5e-25 117.9 86 66.3
GSVIVG01027922001 Vitis vinifera HOM05D003112 ORTHO05D003660 5.5e-25 117.9 84 71.4
CiPaw.02G106400 Carya illinoinensis HOM05D003112 ORTHO05D003660 7.2e-25 117.5 93 61.3
Nitab4.5_0001041g0160 Nicotiana tabacum HOM05D003112 ORTHO05D003660 7.2e-25 117.5 120 52.5
PGR004G0234 Punica granatum HOM05D003112 ORTHO05D003660 7.2e-25 117.5 96 62.5
RcHm_v2.0_Chr4g0395531 Rosa chinensis HOM05D003112 ORTHO05D003660 7.2e-25 117.5 86 67.4
Ciclev10004776m.g Citrus clementina HOM05D003112 ORTHO05D003660 9.3e-25 117.1 85 68.2
FAN12G3900 Fragaria x ananassa HOM05D003112 ORTHO05D003660 9.3e-25 117.1 82 67.1
Potri.008G172500 Populus trichocarpa HOM05D003112 ORTHO05D003660 9.3e-25 117.1 86 67.4
RcHm_v2.0_Chr4g0395521 Rosa chinensis HOM05D003112 ORTHO05D003660 9.3e-25 117.1 86 67.4
Sabra08G0131800 Salix brachista HOM05D003112 ORTHO05D003660 9.3e-25 117.1 86 67.4
CsaV3_3G049730 Cucumis sativus L. HOM05D003112 ORTHO05D003660 1.2e-24 116.7 86 66.3
Migut.G00571 Erythranthe guttata HOM05D003112 ORTHO05D003660 1.2e-24 116.7 76 75.0
Sc19g0005580 Simmondsia chinensis HOM05D003112 ORTHO05D003660 1.2e-24 116.7 88 68.2
HanXRQChr14g0434761 Helianthus annuus HOM05D003112 ORTHO05D003660 1.6e-24 116.3 83 67.5
Manes.15G046300 Manihot esculenta HOM05D003112 ORTHO05D003660 1.6e-24 116.3 120 52.5
Sabra10G0042000 Salix brachista HOM05D003112 ORTHO05D003660 1.6e-24 116.3 86 67.4
SGA_v2.0_scaffold31G12624 Striga asiatica HOM05D003112 ORTHO05D003660 1.6e-24 116.3 78 73.1
THA.LOC104808742 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 1.6e-24 116.3 78 74.4
THA.LOC104821631 Tarenaya hassleriana HOM05D003112 ORTHO05D003660 1.6e-24 116.3 78 74.4
GSVIVG01029978001 Vitis vinifera HOM05D003112 ORTHO05D003660 1.6e-24 116.3 120 54.2
EL10Ac3g06677 Beta vulgaris HOM05D003112 ORTHO05D003660 2.1e-24 115.9 80 70.0
Cpa.g.sc59.7 Carica papaya HOM05D003112 ORTHO05D003660 2.1e-24 115.9 70 78.6
ECA248G0532 Erigeron canadensis HOM05D003112 ORTHO05D003660 2.1e-24 115.9 83 68.7
ECA248G1257 Erigeron canadensis HOM05D003112 ORTHO05D003660 2.1e-24 115.9 83 68.7
Lj3A640T23 Lonicera japonica HOM05D003112 ORTHO05D003660 2.1e-24 115.9 85 69.4
Lalb_Chr23g0271781 Lupinus albus HOM05D003112 ORTHO05D003660 2.1e-24 115.9 86 67.4
Prupe.1G049300 Prunus persica HOM05D003112 ORTHO05D003660 2.1e-24 115.9 120 53.3
FAN17G0040 Fragaria x ananassa HOM05D003112 ORTHO05D003660 2.7e-24 115.5 86 65.1
Gorai.006G073400 Gossypium raimondii HOM05D003112 ORTHO05D003660 2.7e-24 115.5 86 67.4
MD13G1222900 Malus domestica HOM05D003112 ORTHO05D003660 2.7e-24 115.5 84 66.7
arahy.Tifrunner.gnm1.ann1.RMYF3V Arachis hypogaea HOM05D003112 ORTHO05D003660 3.5e-24 115.2 70 77.1
FvH4_4g04720 Fragaria vesca HOM05D003112 ORTHO05D003660 3.5e-24 115.2 69 75.4
Lj6g0010145 Lotus japonicus HOM05D003112 ORTHO05D003660 3.5e-24 115.2 86 66.3
SalBow2G1480 Salvia bowleyana HOM05D003112 ORTHO05D003660 3.5e-24 115.2 84 69.0
VMungo0720G0086 Vigna mungo HOM05D003112 ORTHO05D003660 3.5e-24 115.2 119 56.3
MSTRG.24656 Avicennia marina HOM05D003112 ORTHO05D003660 4.6e-24 114.8 78 71.8
Carub.0007s2912 Capsella rubella HOM05D003112 ORTHO05D003660 6.1e-24 114.4 87 65.5
Aa31LG7G1680 Aethionema arabicum HOM05D003112 ORTHO05D003660 7.9e-24 114.0 116 51.7
Lalb_Chr11g0067221 Lupinus albus HOM05D003112 ORTHO05D003660 7.9e-24 114.0 86 65.1
unitig_736.g22485 Utricularia gibba HOM05D003112 ORTHO05D003660 7.9e-24 114.0 78 73.1
Dinv29798 Davidia involucrata HOM05D003112 ORTHO05D003660 1.0e-23 113.6 120 54.2
Gohir.D09G059100 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.0e-23 113.6 85 67.1
Medtr1g045750 Medicago truncatula HOM05D003112 ORTHO05D003660 1.0e-23 113.6 86 62.8
AT4G13430 Arabidopsis thaliana HOM05D003112 ORTHO05D003660 1.3e-23 113.2 87 64.4
Lj3A639T17 Lonicera japonica HOM05D003112 ORTHO05D003660 1.3e-23 113.2 85 68.2
Phvul.007G232000 Phaseolus vulgaris HOM05D003112 ORTHO05D003660 1.3e-23 113.2 119 54.6
TPR.G23961 Trifolium pratense HOM05D003112 ORTHO05D003660 1.3e-23 113.2 86 62.8
TWI09G1061 Tripterygium wilfordii HOM05D003112 ORTHO05D003660 1.3e-23 113.2 81 71.6
Hma1.2p1_0112F.1_g054810 Hydrangea macrophylla HOM05D003112 ORTHO05D003660 1.8e-23 112.8 120 53.3
Ca_11883_v3 Cicer arietinum L. HOM05D003112 ORTHO05D003660 3.0e-23 112.1 70 72.9
AL9U10130 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 3.9e-23 111.7 84 65.5
CBR_g53549 Chara braunii HOM05D003112 ORTHO05D003660 3.9e-23 111.7 76 71.1
Glyma.17G256102 Glycine max HOM05D003112 ORTHO05D003660 3.9e-23 111.7 121 54.5
SalBow3G1186 Salvia bowleyana HOM05D003112 ORTHO05D003660 5.1e-23 111.3 123 50.4
Atru.chr4.1904 Acer truncatum HOM05D003112 ORTHO05D003660 6.7e-23 110.9 78 71.8
BcaC07g37364 Brassica carinata HOM05D003112 ORTHO05D003660 6.7e-23 110.9 83 63.9
A08p06810 Brassica napus HOM05D003112 ORTHO05D003660 6.7e-23 110.9 83 63.9
C08p08140 Brassica napus HOM05D003112 ORTHO05D003660 6.7e-23 110.9 83 63.9
BolC8t47666H Brassica oleracea HOM05D003112 ORTHO05D003660 6.7e-23 110.9 83 63.9
BraA08t32699Z Brassica rapa HOM05D003112 ORTHO05D003660 6.7e-23 110.9 83 63.9
Cre01.g004500 Chlamydomonas reinhardtii HOM05D003112 ORTHO05D003660 6.7e-23 110.9 83 61.4
BcaB04g17692 Brassica carinata HOM05D003112 ORTHO05D003660 1.1e-22 110.2 83 63.9
CARHR219070 Cardamine hirsuta HOM05D003112 ORTHO05D003660 1.1e-22 110.2 87 62.1
Psat3g068240 Pisum sativum HOM05D003112 ORTHO05D003660 1.1e-22 110.2 86 62.8
Manes.03G158200 Manihot esculenta HOM05D003112 ORTHO05D003660 1.5e-22 109.8 86 66.3
Haze_11466 Corylus avellana HOM05D003112 ORTHO05D003660 1.9e-22 109.4 79 72.2
Dinv19267 Davidia involucrata HOM05D003112 ORTHO05D003660 1.9e-22 109.4 79 69.6
Thhalv10024960m.g Eutrema salsugineum HOM05D003112 ORTHO05D003660 1.9e-22 109.4 86 62.8
Sp7g10990 Schrenkiella parvula HOM05D003112 ORTHO05D003660 1.9e-22 109.4 86 62.8
SalBow3G3468 Salvia bowleyana HOM05D003112 ORTHO05D003660 2.5e-22 109.0 78 65.4
C04p42460 Brassica napus HOM05D003112 ORTHO05D003660 3.3e-22 108.6 86 62.8
BolC4t25824H Brassica oleracea HOM05D003112 ORTHO05D003660 3.3e-22 108.6 86 62.8
Zm00001eb208760 Zea mays HOM05D003112 ORTHO05D003660 3.3e-22 108.6 104 54.8
CiPaw.02G106200 Carya illinoinensis HOM05D003112 ORTHO05D003660 5.7e-22 107.8 70 71.4
BraA04t16563Z Brassica rapa HOM05D003112 ORTHO05D003660 7.4e-22 107.5 86 61.6
BcaC02g09423 Brassica carinata HOM05D003112 ORTHO05D003660 9.7e-22 107.1 67 73.1
A04p08700 Brassica napus HOM05D003112 ORTHO05D003660 9.7e-22 107.1 104 55.8
COL.COLO4_15975 Corchorus olitorius HOM05D003112 ORTHO05D003660 9.7e-22 107.1 104 57.7
SHI00769 Sapria himalayana HOM05D003112 ORTHO05D003660 1.3e-21 106.7 86 62.8
Thecc.04G265800 Theobroma cacao HOM05D003112 ORTHO05D003660 1.3e-21 106.7 86 62.8
FvH4_5g09890 Fragaria vesca HOM05D003112 ORTHO05D003660 1.6e-21 106.3 77 63.6
Cfa014789 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.2e-21 105.9 87 63.2
CSS0008180 Camellia sinensis var. sinensis HOM05D003112 ORTHO05D003660 4.8e-21 104.8 118 53.4
Solyc09g090900.4 Solanum lycopersicum HOM05D003112 ORTHO05D003660 8.2e-21 104.0 71 67.6
Sopen09g033880 Solanum pennellii HOM05D003112 ORTHO05D003660 8.2e-21 104.0 71 67.6
Duzib151G1146 Durio zibethinus HOM05D003112 ORTHO05D003660 1.1e-20 103.6 86 62.8
FAN17G2284 Fragaria x ananassa HOM05D003112 ORTHO05D003660 1.4e-20 103.2 78 64.1
arahy.Tifrunner.gnm1.ann1.L114HI Arachis hypogaea HOM05D003112 ORTHO05D003660 5.3e-20 101.3 80 63.8
Gohir.A09G059800 Gossypium hirsutum HOM05D003112 ORTHO05D003660 6.9e-20 100.9 54 85.2
Lsat_1_v5_gn_1_75540 Lactuca sativa HOM05D003112 ORTHO05D003660 1.2e-19 100.1 58 79.3
Peaxi162Scf01044g00110 Petunia axillaris HOM05D003112 ORTHO05D003660 1.5e-19 99.8 140 42.9
Gohir.D09G059000 Gossypium hirsutum HOM05D003112 ORTHO05D003660 4.5e-19 98.2 121 47.9
Gorai.006G073300 Gossypium raimondii HOM05D003112 ORTHO05D003660 5.9e-19 97.8 121 47.9
Peaxi162Scf01044g00008 Petunia axillaris HOM05D003112 ORTHO05D003660 1.0e-18 97.1 58 75.9
Gohir.A09G059700 Gossypium hirsutum HOM05D003112 ORTHO05D003660 1.3e-18 96.7 70 61.4
Haze_22165 Corylus avellana HOM05D003112 ORTHO05D003660 5.0e-18 94.7 74 66.2
DCAR_024295 Daucus carota HOM05D003112 ORTHO05D003660 5.0e-18 94.7 58 75.9
BcaB01g03166 Brassica carinata HOM05D003112 ORTHO05D000005 2.5e-17 92.4 61 68.9
Glyma.20G199600 Glycine max HOM05D003112 ORTHO05D003660 3.2e-17 92.0 87 56.3
Lj3C639T4 Lonicera japonica HOM05D003112 ORTHO05D003660 7.2e-17 90.9 54 75.9
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 7.2e-17 90.9 86 54.7
AL4G28570 Arabidopsis lyrata HOM05D003112 ORTHO05D003660 1.6e-16 89.7 53 77.4
arahy.Tifrunner.gnm1.ann1.F7U1GP Arachis hypogaea HOM05D003112 ORTHO05D003660 2.7e-16 89.0 86 53.5
Medtr1g073200 Medicago truncatula HOM05D003112 ORTHO05D003660 3.6e-16 88.6 86 55.8
Nitab4.5_0001041g0170 Nicotiana tabacum HOM05D003112 ORTHO05D003660 7.9e-16 87.4 71 56.3
TPR.G28479 Trifolium pratense HOM05D003112 ORTHO05D003660 1.8e-15 86.3 112 42.9
arahy.Tifrunner.gnm1.ann1.K9LPZT Arachis hypogaea HOM05D003112 ORTHO05D003660 2.3e-15 85.9 86 51.2
Nitab4.5_0002613g0050 Nicotiana tabacum HOM05D003112 ORTHO05D003660 3.0e-15 85.5 54 66.7
CAN.G524.11 Capsicum annuum HOM05D003112 ORTHO05D003660 3.9e-15 85.1 58 65.5
Haze_11468 Corylus avellana HOM05D001145 ORTHO05D001415 8.8e-15 84.0 66 66.7
Lj5g0009083 Lotus japonicus HOM05D003112 ORTHO05D003660 5.7e-14 81.3 86 48.8
Peaxi162Scf01044g00224 Petunia axillaris HOM05D003112 ORTHO05D003660 9.7e-14 80.5 58 62.1
Nitab4.5_0005154g0020 Nicotiana tabacum HOM05D003112 ORTHO05D003660 6.5e-10 67.8 44 59.1


User provided reference genes

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