Gene: PGR004G0234
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR004G0234
- Transcript Identifier PGR004G0234.01
- Gene Type Coding gene
- Location NC_045131.1 : 5374503-5378753 : negative
Gene Family Information
- ID HOM05D003112
- #Genes/#Species 220/100
- Phylogenetic origin
- ID ORTHO05D003660
- #Genes/#Species 210/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031396846.1
- name LOC116207873
- name XM_031540986.1
- id gene-LOC116207873
- uniprot A0A6P8DUD4
Descriptions
- product 3-isopropylmalate dehydratase large subunit, chloroplastic
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008652 | IEA | GOA Database | cellular amino acid biosynthetic process | |
| GO:0008652 | IEA | InterPro | cellular amino acid biosynthetic process | |
| GO:0009098 | IEA | GOA Database | leucine biosynthetic process | |
| GO:0019761 | ISO | PLAZA Integrative Orthology | glucosinolate biosynthetic process | AT4G13430 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016836 | IEA | GOA Database | hydro-lyase activity | |
| GO:0016836 | IEA | InterPro | hydro-lyase activity | |
| GO:0051539 | IEA | GOA Database | 4 iron, 4 sulfur cluster binding | |
| GO:0051539 | IEA | InterPro | 4 iron, 4 sulfur cluster binding | |
| GO:0003861 | IEA | GOA Database | 3-isopropylmalate dehydratase activity | |
| GO:0003861 | IEA | InterPro | 3-isopropylmalate dehydratase activity | |
| GO:0051536 | IEA | GOA Database | iron-sulfur cluster binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016829 | IEA | GOA Database | lyase activity | |
| GO:0050486 | ISO | PLAZA Integrative Orthology | intramolecular transferase activity, transferring hydroxy groups | AT4G13430 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036008 | Aconitase, iron-sulfur domain |
| IPR015931 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 |
| IPR001030 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain |
| IPR006251 | Homoaconitase/3-isopropylmalate dehydratase, large subunit |
| IPR033941 | 3-Isopropylmalate dehydratase, catalytic domain |
| Mapman id | Description |
|---|---|
| 30.1.1.3.1 | Clade-specific metabolism.Brassicaceae.glucosinolate biosynthesis.methylthioalkylmalate isomerase heterodimer.large subunit |
| 4.1.3.2.5.2.1 | Amino acid metabolism.biosynthesis.pyruvate family.pyruvate-derived amino acids.leucine.isopropylmalate isomerase heterodimer.large subunit |