Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_24800 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 6.7e-257 890.2 453 100.0
ATR0564G498 Amborella trichopoda HOM05D003704 ORTHO05D005892 2.2e-159 566.2 433 66.5
TAR628G1325 Trochodendron aralioides HOM05D003704 ORTHO05D005892 1.1e-158 563.9 436 67.9
CDE02G2053 Ceratophyllum demersum HOM05D003704 ORTHO05D005892 3.5e-157 558.9 436 65.8
GSVIVG01029933001 Vitis vinifera HOM05D003704 ORTHO05D005892 9.6e-155 550.8 438 66.0
ClCG05G020780 Citrullus lanatus HOM05D003704 ORTHO05D005892 8.2e-154 547.7 440 65.9
MELO3C012449.2 Cucumis melo HOM05D003704 ORTHO05D005892 1.2e-152 543.9 438 65.3
CiPaw.13G011100 Carya illinoinensis HOM05D003704 ORTHO05D005892 2.0e-152 543.1 437 65.9
Prupe.2G030100 Prunus persica HOM05D003704 ORTHO05D005892 2.0e-152 543.1 438 65.5
CsaV3_5G036520 Cucumis sativus L. HOM05D003704 ORTHO05D005892 5.8e-152 541.6 437 65.4
MBI05_g32455_MAGBIO Magnolia biondii HOM05D003704 ORTHO05D005892 1.3e-151 540.4 437 65.4
Nn5g29073 Nelumbo nucifera HOM05D003704 ORTHO05D005892 2.9e-151 539.3 437 65.2
PGR142G1874 Punica granatum HOM05D003704 ORTHO05D005892 4.9e-151 538.5 438 65.1
Mapoly0170s0020 Marchantia polymorpha HOM05D003704 ORTHO05D005892 1.1e-150 537.3 436 63.8
Manes.04G164800 Manihot esculenta HOM05D003704 ORTHO05D005892 4.2e-150 535.4 446 64.3
QL04p013824 Quercus lobata HOM05D003704 ORTHO05D005892 5.5e-150 535.0 443 64.3
Eucgr.G03254 Eucalyptus grandis HOM05D003704 ORTHO05D005892 9.3e-150 534.3 446 62.6
CANSAT64G2305 Cannabis sativa HOM05D003704 ORTHO05D005892 1.6e-149 533.5 439 64.9
Cfa010865 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.6e-149 533.5 438 65.5
Aqoxy1G04161 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 2.7e-149 532.7 440 65.2
MD07G1033300 Malus domestica HOM05D003704 ORTHO05D005892 2.7e-149 532.7 439 64.0
PSO541G6018 Papaver somniferum HOM05D003704 ORTHO05D005892 4.6e-149 531.9 436 64.0
Ciclev10030496m.g Citrus clementina HOM05D003704 ORTHO05D005892 3.0e-148 529.3 436 64.4
TWI15G0657 Tripterygium wilfordii HOM05D003704 ORTHO05D005892 3.0e-148 529.3 442 63.3
Sc11g0006670 Simmondsia chinensis HOM05D003704 ORTHO05D005892 5.1e-148 528.5 442 63.8
PSO781G0253 Papaver somniferum HOM05D003704 ORTHO05D005892 6.7e-148 528.1 436 63.5
Sed0025295 Sechium edule HOM05D003704 ORTHO05D005892 8.7e-148 527.7 437 64.1
Haze_03082 Corylus avellana HOM05D003704 ORTHO05D005892 1.9e-147 526.6 454 62.6
EL10Ac2g02849 Beta vulgaris HOM05D003704 ORTHO05D005892 5.7e-147 525.0 438 62.8
Hund15714 Selenicereus undatus HOM05D003704 ORTHO05D005892 9.7e-147 524.2 457 61.9
AUR62026830 Chenopodium quinoa HOM05D003704 ORTHO05D005892 1.6e-146 523.5 442 62.9
Atru.chr11.2463 Acer truncatum HOM05D003704 ORTHO05D005892 2.8e-146 522.7 436 62.4
Atru.chr11.2491 Acer truncatum HOM05D003704 ORTHO05D005892 2.8e-146 522.7 436 62.2
AUR62037223 Chenopodium quinoa HOM05D003704 ORTHO05D005892 3.7e-146 522.3 442 62.9
Phvul.003G001700 Phaseolus vulgaris HOM05D003704 ORTHO05D005892 8.2e-146 521.2 440 63.2
Zm00001eb018810 Zea mays HOM05D003704 ORTHO05D005892 1.8e-145 520.0 435 61.4
FAN03G0678 Fragaria x ananassa HOM05D003704 ORTHO05D005892 2.4e-145 519.6 438 64.2
Cc02_g29160 Coffea canephora HOM05D003704 ORTHO05D005892 9.0e-145 517.7 438 62.3
CSS0035088 Camellia sinensis var. sinensis HOM05D003704 ORTHO05D005892 2.0e-144 516.5 434 63.6
Gohir.D08G245550 Gossypium hirsutum HOM05D003704 ORTHO05D005892 4.5e-144 515.4 440 63.6
Nitab4.5_0000316g0110 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.0e-143 514.2 447 62.6
FAN10G3548 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.3e-143 513.8 438 63.7
Gorai.004G262000 Gossypium raimondii HOM05D003704 ORTHO05D005892 1.3e-143 513.8 440 63.4
Nitab4.5_0001888g0060 Nicotiana tabacum HOM05D003704 ORTHO05D005892 1.3e-143 513.8 447 62.6
RcHm_v2.0_Chr1g0319731 Rosa chinensis HOM05D003704 ORTHO05D005892 1.3e-143 513.8 440 63.6
VMungo0251G0473 Vigna mungo HOM05D003704 ORTHO05D005892 1.3e-143 513.8 442 62.2
Thecc.05G198600 Theobroma cacao HOM05D003704 ORTHO05D005892 1.7e-143 513.5 440 63.9
Dinv32045 Davidia involucrata HOM05D003704 ORTHO05D005892 2.9e-143 512.7 440 63.9
Duzib128G1318 Durio zibethinus HOM05D003704 ORTHO05D005892 3.8e-143 512.3 440 63.6
MSTRG.28042 Avicennia marina HOM05D003704 ORTHO05D005892 8.5e-143 511.1 439 60.8
Glyma.20G000700 Glycine max HOM05D003704 ORTHO05D005892 1.1e-142 510.8 440 62.5
Actinidia21525 Actinidia chinensis HOM05D003704 ORTHO05D005892 1.4e-142 510.4 435 62.8
Glyma.09G285300 Glycine max HOM05D003704 ORTHO05D005892 7.2e-142 508.1 442 62.7
Sabra03G0148800 Salix brachista HOM05D003704 ORTHO05D005892 7.2e-142 508.1 449 61.7
Ah.12g065080 Amaranthus hybridus HOM05D003704 ORTHO05D005892 1.6e-141 506.9 437 61.1
CAN.G1571.5 Capsicum annuum HOM05D003704 ORTHO05D005892 1.6e-141 506.9 437 63.2
FAN01G0955 Fragaria x ananassa HOM05D003704 ORTHO05D005892 1.6e-141 506.9 438 63.0
Potri.003G201200 Populus trichocarpa HOM05D003704 ORTHO05D005892 2.7e-141 506.1 449 61.7
THA.LOC104801743 Tarenaya hassleriana HOM05D003704 ORTHO05D005892 6.1e-141 505.0 436 61.2
FAN06G0794 Fragaria x ananassa HOM05D003704 ORTHO05D005892 7.9e-141 504.6 438 63.0
Lalb_Chr17g0337761 Lupinus albus HOM05D003704 ORTHO05D005892 1.4e-140 503.8 441 62.4
Sopen01g030440 Solanum pennellii HOM05D003704 ORTHO05D005892 1.8e-140 503.4 444 62.6
Migut.N01826 Erythranthe guttata HOM05D003704 ORTHO05D005892 3.9e-140 502.3 437 61.3
FvH4_7g02390 Fragaria vesca HOM05D003704 ORTHO05D005892 8.8e-140 501.1 438 62.8
TPR.G35533 Trifolium pratense HOM05D003704 ORTHO05D005892 8.8e-140 501.1 436 62.2
BcaB02g09152 Brassica carinata HOM05D003704 ORTHO05D005892 1.1e-139 500.7 442 60.6
Solyc01g068480.4 Solanum lycopersicum HOM05D003704 ORTHO05D005892 1.1e-139 500.7 444 62.4
HanXRQChr17g0564051 Helianthus annuus HOM05D003704 ORTHO05D005892 5.7e-139 498.4 436 61.0
Lsat_1_v5_gn_4_29820 Lactuca sativa HOM05D003704 ORTHO05D005892 1.3e-138 497.3 438 61.0
Lj2g0008107 Lotus japonicus HOM05D003704 ORTHO05D005892 2.8e-138 496.1 438 60.5
Thhalv10016138m.g Eutrema salsugineum HOM05D003704 ORTHO05D005892 6.3e-138 495.0 443 60.3
Ca_12375_v3 Cicer arietinum L. HOM05D003704 ORTHO05D005892 8.2e-138 494.6 441 61.0
GSVIVG01000835001 Vitis vinifera HOM05D003704 ORTHO05D005892 1.1e-137 494.2 569 51.0
Lj2A1006G35 Lonicera japonica HOM05D003704 ORTHO05D005892 3.1e-137 492.7 439 61.3
ECA234G1951 Erigeron canadensis HOM05D003704 ORTHO05D005892 6.9e-137 491.5 440 60.2
Rhsim01G0123500 Rhododendron simsii HOM05D003704 ORTHO05D005892 9.1e-137 491.1 443 60.7
Oeu003918.1 Olea europaea HOM05D003704 ORTHO05D005892 1.5e-136 490.3 484 56.4
Sp4g21160 Schrenkiella parvula HOM05D003704 ORTHO05D005892 1.5e-136 490.3 443 60.0
arahy.Tifrunner.gnm1.ann1.75MG08 Arachis hypogaea HOM05D003704 ORTHO05D005892 1.7e-135 486.9 436 60.8
AT2G38770 Arabidopsis thaliana HOM05D003704 ORTHO05D005892 2.2e-135 486.5 442 59.5
BolC4t22475H Brassica oleracea HOM05D003704 ORTHO05D005892 2.2e-135 486.5 442 59.3
arahy.Tifrunner.gnm1.ann1.RZB3JM Arachis hypogaea HOM05D003704 ORTHO05D005892 2.9e-135 486.1 436 60.6
BraA05t19706Z Brassica rapa HOM05D003704 ORTHO05D005892 2.9e-135 486.1 442 59.5
Carub.0004s2079 Capsella rubella HOM05D003704 ORTHO05D005892 3.8e-135 485.7 442 59.3
C04p08870 Brassica napus HOM05D003704 ORTHO05D005892 5.0e-135 485.3 442 59.5
Medtr1g038815 Medicago truncatula HOM05D003704 ORTHO05D005892 6.5e-135 485.0 439 60.8
Aa31LG5G20910 Aethionema arabicum HOM05D003704 ORTHO05D005892 1.1e-134 484.2 443 59.1
A05p07400 Brassica napus HOM05D003704 ORTHO05D005892 1.1e-134 484.2 442 59.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 1.1e-134 484.2 439 59.5
AL4G36070 Arabidopsis lyrata HOM05D003704 ORTHO05D005892 1.9e-134 483.4 442 59.0
DCAR_003239 Daucus carota HOM05D003704 ORTHO05D005892 9.4e-134 481.1 433 59.8
SGA_v2.0_scaffold5G02930 Striga asiatica HOM05D003704 ORTHO05D005892 2.7e-133 479.6 487 55.2
CARHR133480 Cardamine hirsuta HOM05D003704 ORTHO05D005892 5.7e-131 471.9 436 58.3
C04p66890 Brassica napus HOM05D003704 ORTHO05D005892 1.7e-130 470.3 443 58.9
BraA04t18425Z Brassica rapa HOM05D003704 ORTHO05D005892 1.7e-130 470.3 448 58.5
BcaC02g07445 Brassica carinata HOM05D003704 ORTHO05D005892 2.8e-130 469.5 443 58.5
BolC4t28191H Brassica oleracea HOM05D003704 ORTHO05D005892 2.8e-130 469.5 443 58.5
vmacro12686 Vaccinium macrocarpon HOM05D003704 ORTHO05D005892 1.1e-129 467.6 524 52.1
AagrBONN_evm.TU.Sc2ySwM_344.1100 Anthoceros agrestis HOM05D003704 ORTHO05D005892 1.4e-129 467.2 449 56.8
Gohir.A08G225100 Gossypium hirsutum HOM05D003704 ORTHO05D005892 1.3e-127 460.7 440 59.1
Peaxi162Scf00309g00333 Petunia axillaris HOM05D003704 ORTHO05D005892 9.4e-126 454.5 443 56.7
CBR_g49869 Chara braunii HOM05D003704 ORTHO05D005892 1.4e-124 450.7 470 54.0
BcaNung07214 Brassica carinata HOM05D003704 ORTHO05D005892 3.8e-119 432.6 346 64.7
Psat6g100680 Pisum sativum HOM05D003704 ORTHO05D005892 2.7e-117 426.4 442 55.2
Aqoxy263s005 Aquilegia oxysepala HOM05D003704 ORTHO05D005892 1.5e-115 420.6 313 69.3
Pp3c21_9820 Physcomitrium patens HOM05D003704 ORTHO05D005892 8.5e-111 404.8 377 56.8
Migut.O00529 Erythranthe guttata HOM05D003704 ORTHO05D005892 2.7e-109 399.8 437 52.2
SMO230G0016 Selaginella moellendorffii HOM05D003704 ORTHO05D005892 1.4e-105 387.5 385 54.0
Cpa.g.sc2782.1 Carica papaya HOM05D003704 ORTHO05D005892 4.5e-104 382.5 337 61.1
COL.COLO4_37421 Corchorus olitorius HOM05D003704 ORTHO05D005892 3.3e-94 349.7 325 59.1
unitig_21.g20278 Utricularia gibba HOM05D003704 ORTHO05D005892 3.6e-93 346.3 306 59.2
QL07p028220 Quercus lobata HOM05D003704 ORTHO05D005892 8.0e-85 318.5 257 65.4
MD02G1293500 Malus domestica HOM05D003704 ORTHO05D005892 1.4e-81 307.8 269 61.3
Cre06.g300750 Chlamydomonas reinhardtii HOM05D003704 ORTHO05D005892 8.9e-76 288.5 333 50.8
MCO01G629 Micromonas commoda HOM05D003704 ORTHO05D005892 5.2e-68 262.7 376 40.4
Gorai.010G147800 Gossypium raimondii HOM05D003704 ORTHO05D005892 2.7e-56 223.8 226 55.8
PSO781G0329 Papaver somniferum HOM05D003704 ORTHO05D005892 2.6e-51 207.2 225 51.1
MD02G1293400 Malus domestica HOM05D003704 ORTHO05D005892 2.2e-50 204.1 130 76.2
HPP92_001562 Vanilla planifolia HOM05D003704 ORTHO05D005892 3.8e-50 203.4 238 49.6
SGA_v2.0_scaffold354G49736 Striga asiatica HOM05D003704 ORTHO05D005892 1.3e-47 194.9 407 35.9
QL01p034778 Quercus lobata HOM05D003704 ORTHO05D005892 4.5e-43 179.9 130 70.0
PRCOL_00007279 Prasinoderma coloniale HOM05D003704 ORTHO05D005892 8.4e-42 175.6 434 32.3
Psat4g010680 Pisum sativum HOM05D003704 ORTHO05D005892 1.2e-40 171.8 161 57.1
HPP92_001561 Vanilla planifolia HOM05D003704 ORTHO05D005892 1.1e-38 165.2 157 56.7
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 7.6e-35 152.5 401 30.7
Lalb_Chr10g0094791 Lupinus albus HOM05D003704 ORTHO05D028681 3.7e-29 133.7 89 71.9
CARHR288720 Cardamine hirsuta HOM05D003704 ORTHO05D005892 3.1e-28 130.6 100 64.0
RcHm_v2.0_Chr1g0320051 Rosa chinensis HOM05D003704 ORTHO05D005892 1.7e-26 124.8 137 54.7
RcHm_v2.0_Chr1g0320421 Rosa chinensis HOM05D003704 ORTHO05D017707 4.2e-25 120.2 93 64.5
Psat5g110280 Pisum sativum HOM05D003704 ORTHO05D005892 1.0e-23 115.5 71 74.6
RcHm_v2.0_Chr1g0320981 Rosa chinensis HOM05D003704 ORTHO05D017707 2.5e-22 110.9 75 72.0
Cpa.g.c47396 Carica papaya HOM05D003704 ORTHO05D005892 1.8e-20 104.8 72 73.6
BcaB06g28494 Brassica carinata HOM05D003704 ORTHO05D040007 5.9e-19 99.8 87 59.8
C04p60420 Brassica napus HOM05D003704 ORTHO05D040007 7.7e-19 99.4 87 59.8
HanXRQChr14g0439891 Helianthus annuus HOM05D003704 ORTHO05D005892 6.1e-16 89.7 64 64.1
SMO230G0104 Selaginella moellendorffii HOM05D003704 ORTHO05D013439 7.9e-16 89.4 91 51.6
Sabra16G0112400 Salix brachista HOM05D003704 ORTHO05D017707 3.3e-14 84.0 66 62.1
Sabra18G0029400 Salix brachista HOM05D000117 ORTHO05D017707 3.3e-14 84.0 66 62.1
Sabra11G0114600 Salix brachista HOM05D003704 ORTHO05D017707 1.4e-12 78.6 59 64.4
Sabra17G0036200 Salix brachista HOM05D003704 ORTHO05D017707 1.4e-12 78.6 59 64.4
unitig_21.g20277 Utricularia gibba HOM05D003704 ORTHO05D005892 1.4e-12 78.6 64 57.8
Sabra16G0122800 Salix brachista HOM05D003704 ORTHO05D017707 5.3e-12 76.6 58 63.8
Sabra16G0231600 Salix brachista HOM05D001895 ORTHO05D002082 5.3e-12 76.6 59 62.7
QL01p034783 Quercus lobata HOM05D003704 ORTHO05D005892 2.2e-10 71.2 41 75.6
BolC4t27541H Brassica oleracea HOM05D003704 ORTHO05D017707 2.6e-06 57.8 41 70.7


User provided reference genes

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