Gene: Solyc01g068480.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc01g068480.4
  • Transcript Identifier Solyc01g068480.4.1
  • Gene Type Coding gene
  • Location SL4.0ch01 : 70513584-70526965 : positive

Gene Family Information

  • ID HOM05D003704
  • #Genes/#Species 185/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc01g068480.4.1
  • uniprot A0A3Q7F0F1
  • gene_id Solyc01g068480

Descriptions

  • Description P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** A0A2U1P5L6_ARTAN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004386
IEA
GOA Databasehelicase activity
GO:0004386
IEA
InterProhelicase activity
GO:0003723
IBA
GOA DatabaseRNA binding
GO:0003729
IBA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005681
IEA
InterProspliceosomal complex
GO:0071013
IBA
GOA Databasecatalytic step 2 spliceosome
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT2G38770

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR041679 DNA2/NAM7 helicase-like, C-terminal
IPR041677 DNA2/NAM7 helicase, helicase domain
IPR026300 CWF11 family
IPR045055 DNA2/NAM7-like helicase
IPR032174 Intron-binding protein aquarius, N-terminal
Mapman id Description
16.2.5.2.3 RNA processing.pre-mRNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).associated components.component MAC7