Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 2.5e-150 535.4 268 100.0
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.8e-79 300.1 240 63.3
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 1.8e-79 300.1 213 71.8
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 3.0e-79 299.3 222 67.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 3.9e-79 298.9 219 68.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.9e-78 296.6 195 74.4
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.1e-77 293.1 226 66.4
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 2.8e-77 292.7 258 59.3
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 2.8e-77 292.7 220 67.3
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.8e-77 292.7 176 77.3
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 3.7e-77 292.4 194 74.7
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 4.8e-77 292.0 247 62.3
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 4.8e-77 292.0 233 66.1
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 4.8e-77 292.0 203 71.9
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 6.2e-77 291.6 225 67.6
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 8.1e-77 291.2 200 72.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 8.1e-77 291.2 215 67.9
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 8.1e-77 291.2 185 75.7
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 1.1e-76 290.8 209 68.4
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 1.1e-76 290.8 183 76.5
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 1.8e-76 290.0 193 73.6
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.1e-76 289.3 231 64.9
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 3.1e-76 289.3 217 68.2
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 4.0e-76 288.9 263 58.9
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 5.3e-76 288.5 245 62.9
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 6.9e-76 288.1 178 78.7
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 6.9e-76 288.1 242 62.4
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 6.9e-76 288.1 210 70.5
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 9.0e-76 287.7 211 66.4
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 9.0e-76 287.7 210 69.0
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 9.0e-76 287.7 232 65.1
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 9.0e-76 287.7 180 78.3
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 1.2e-75 287.3 242 62.8
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.2e-75 287.3 197 72.6
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.5e-75 287.0 199 72.4
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 1.5e-75 287.0 178 79.2
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 2.0e-75 286.6 178 78.1
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 2.0e-75 286.6 176 79.5
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 2.0e-75 286.6 186 74.2
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 2.0e-75 286.6 231 64.9
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 2.6e-75 286.2 222 65.3
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 3.4e-75 285.8 198 70.7
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 3.4e-75 285.8 239 64.4
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 3.4e-75 285.8 242 62.8
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 3.4e-75 285.8 221 65.6
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.5e-75 285.4 234 65.0
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 4.5e-75 285.4 234 65.0
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 5.8e-75 285.0 224 64.7
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 5.8e-75 285.0 180 77.8
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 7.6e-75 284.6 219 67.6
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 9.9e-75 284.3 179 75.4
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 1.3e-74 283.9 180 77.2
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.7e-74 283.5 247 61.9
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 2.2e-74 283.1 259 60.6
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.9e-74 282.7 227 66.1
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 4.9e-74 282.0 248 61.3
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 4.9e-74 282.0 206 68.4
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 4.9e-74 282.0 201 68.7
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.9e-74 282.0 223 66.4
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 6.4e-74 281.6 219 65.8
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 6.4e-74 281.6 208 66.8
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 6.4e-74 281.6 197 73.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 6.4e-74 281.6 202 70.3
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 6.4e-74 281.6 233 63.9
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.1e-73 280.8 226 65.5
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.1e-73 280.8 236 61.0
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 1.1e-73 280.8 189 71.4
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.1e-73 280.8 199 69.8
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 1.4e-73 280.4 189 71.4
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 1.4e-73 280.4 211 65.4
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 1.4e-73 280.4 189 72.0
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 1.4e-73 280.4 178 77.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.4e-73 280.4 257 61.5
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-73 280.0 220 63.2
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.5e-73 279.6 189 71.4
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 2.5e-73 279.6 236 61.9
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 3.2e-73 279.3 219 63.5
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 4.2e-73 278.9 180 76.1
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.2e-73 278.9 189 70.9
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 7.1e-73 278.1 178 75.8
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 1.2e-72 277.3 207 65.2
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 1.2e-72 277.3 180 75.6
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 1.6e-72 276.9 258 57.4
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-72 276.6 206 68.4
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 2.1e-72 276.6 181 73.5
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.7e-72 276.2 204 67.6
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.7e-72 276.2 180 75.6
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 2.7e-72 276.2 179 74.9
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 3.5e-72 275.8 230 63.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 3.5e-72 275.8 176 74.4
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 4.6e-72 275.4 189 69.8
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 6.0e-72 275.0 264 58.3
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 1.0e-71 274.2 194 69.6
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.3e-71 273.9 223 62.8
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.8e-71 273.5 247 59.5
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 1.8e-71 273.5 183 69.9
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 1.8e-71 273.5 256 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 3.0e-71 272.7 185 71.4
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.1e-71 271.9 201 67.2
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 6.7e-71 271.6 222 63.1
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 6.7e-71 271.6 178 75.3
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 8.7e-71 271.2 180 75.0
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 2.5e-70 269.6 180 72.8
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 5.6e-70 268.5 186 70.4
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 2.1e-69 266.5 197 67.0
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 2.1e-69 266.5 186 69.4
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 2.8e-69 266.2 201 65.2
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.7e-69 265.8 245 58.0
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 4.8e-69 265.4 197 67.0
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 6.2e-69 265.0 218 64.7
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 1.4e-68 263.8 189 69.3
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 3.1e-68 262.7 169 76.9
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 4.0e-68 262.3 208 64.4
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 6.9e-68 261.5 205 64.4
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 1.5e-67 260.4 164 76.8
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.0e-67 260.0 242 56.2
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 2.2e-66 256.5 243 57.6
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 4.9e-66 255.4 159 76.1
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 2.1e-64 250.0 158 75.9
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 2.1e-64 250.0 205 62.4
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 2.1e-64 250.0 205 62.4
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.6e-64 248.8 249 55.4
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 6.0e-64 248.4 205 62.9
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 7.9e-64 248.1 223 57.4
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 7.9e-64 248.1 228 57.5
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 1.8e-63 246.9 205 62.0
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 1.8e-63 246.9 205 62.0
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.3e-62 242.7 244 54.5
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 5.7e-62 241.9 219 57.1
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 5.7e-62 241.9 216 61.1
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 9.7e-62 241.1 246 56.5
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.6e-61 240.4 245 53.5
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 5.3e-60 235.3 222 55.4
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 8.5e-58 228.0 151 72.8
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 3.3e-54 216.1 149 69.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.2e-53 213.4 205 56.1
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 2.6e-51 206.5 217 49.8
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 1.0e-50 204.5 180 59.4
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 3.8e-50 202.6 133 69.2
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 5.1e-47 192.2 202 55.4
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 5.7e-46 188.7 217 47.9
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 8.2e-45 184.9 193 55.4
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 3.1e-44 183.0 122 71.3
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.0e-43 180.3 120 73.3
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 5.9e-43 178.7 147 66.7
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.2e-40 171.0 217 47.9
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 1.6e-40 170.6 178 52.8
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 3.6e-40 169.5 150 59.3
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 6.7e-39 165.2 123 67.5
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 4.4e-38 162.5 129 63.6
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 2.8e-37 159.8 178 51.7
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.6e-35 154.1 247 42.1
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 5.9e-35 152.1 214 40.7
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-29 134.0 167 47.9
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 1.4e-23 114.4 81 69.1
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.4e-23 114.4 74 71.6
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 5.2e-23 112.5 77 70.1
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 2.6e-22 110.2 96 60.4
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.4e-20 104.4 114 49.1
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 7.7e-19 98.6 123 46.3
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 1.3e-18 97.8 89 58.4
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 7.2e-17 92.0 105 51.4
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 7.0e-12 75.5 145 35.9
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 1.6e-11 74.3 145 33.1
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 3.5e-11 73.2 125 38.4
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 2.9e-10 70.1 133 37.6
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 1.1e-09 68.2 50 64.0
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 1.5e-09 67.8 191 30.9
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.5e-09 67.0 42 73.8
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 4.4e-06 56.2 45 60.0
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 7.5e-06 55.5 106 34.9


User provided reference genes

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