Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_17876 Sequoiadendron giganteum HOM05D005216 ORTHO05D006453 2.1e-132 475.7 237 100.0
SEGI_25764 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 8.1e-28 128.3 73 78.1
SEGI_35696 Sequoiadendron giganteum HOM05D003704 ORTHO05D005892 3.1e-27 126.3 108 60.2
SEGI_07325 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 8.9e-27 124.8 73 76.7
Actinidia21734 Actinidia chinensis HOM05D005216 ORTHO05D006453 8.4e-17 91.7 90 50.0
arahy.Tifrunner.gnm1.ann1.412K95 Arachis hypogaea HOM05D005216 ORTHO05D006453 1.4e-16 90.9 90 53.3
Hma1.2p1_0388F.1_g142030 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 3.2e-16 89.7 59 64.4
CsaV3_7G034980 Cucumis sativus L. HOM05D005216 ORTHO05D006453 4.2e-16 89.4 81 54.3
MELO3C024409.2 Cucumis melo HOM05D005216 ORTHO05D006453 7.1e-16 88.6 81 54.3
arahy.Tifrunner.gnm1.ann1.CL3NUC Arachis hypogaea HOM05D005216 ORTHO05D006453 9.3e-16 88.2 94 53.2
QL05p016421 Quercus lobata HOM05D005216 ORTHO05D006453 1.6e-15 87.4 95 51.6
Cc04_g02310 Coffea canephora HOM05D005216 ORTHO05D006453 2.1e-15 87.0 92 51.1
Gohir.D10G065200 Gossypium hirsutum HOM05D005216 ORTHO05D006453 2.7e-15 86.7 79 53.2
Gorai.011G069100 Gossypium raimondii HOM05D005216 ORTHO05D006453 2.7e-15 86.7 79 53.2
Thecc.06G105100 Theobroma cacao HOM05D005216 ORTHO05D006453 3.5e-15 86.3 63 63.5
CSS0048704 Camellia sinensis var. sinensis HOM05D005216 ORTHO05D006453 4.6e-15 85.9 56 67.9
Sed0006988 Sechium edule HOM05D005216 ORTHO05D006453 4.6e-15 85.9 79 51.9
ClCG09G000480 Citrullus lanatus HOM05D005216 ORTHO05D006453 6.0e-15 85.5 81 53.1
PSO210G0066 Papaver somniferum HOM05D005216 ORTHO05D006453 6.0e-15 85.5 90 48.9
Dinv37942 Davidia involucrata HOM05D005216 ORTHO05D006453 7.8e-15 85.1 47 76.6
vmacro18831 Vaccinium macrocarpon HOM05D005216 ORTHO05D006453 7.8e-15 85.1 88 50.0
Eucgr.J02891 Eucalyptus grandis HOM05D005216 ORTHO05D006453 1.0e-14 84.7 51 72.5
Cfa003614 Carpinus fangiana HOM05D005216 ORTHO05D006453 1.3e-14 84.3 75 61.3
Hma1.2p1_0388F.1_g142040 Hydrangea macrophylla HOM05D005216 ORTHO05D006453 1.3e-14 84.3 49 71.4
MD17G1179000 Malus domestica HOM05D005216 ORTHO05D006453 1.3e-14 84.3 79 58.2
PSO210G6279 Papaver somniferum HOM05D005216 ORTHO05D006453 1.3e-14 84.3 80 50.0
CAN.G1143.37 Capsicum annuum HOM05D005216 ORTHO05D006453 1.7e-14 84.0 68 57.4
FAN14G3972 Fragaria x ananassa HOM05D005216 ORTHO05D006453 1.7e-14 84.0 44 79.5
HanXRQChr04g0095951 Helianthus annuus HOM05D005216 ORTHO05D006453 1.7e-14 84.0 109 47.7
Nitab4.5_0009106g0020 Nicotiana tabacum HOM05D005216 ORTHO05D006453 1.7e-14 84.0 96 50.0
FAN09G2417 Fragaria x ananassa HOM05D005216 ORTHO05D006453 2.3e-14 83.6 79 58.2
Lj3g0001017 Lotus japonicus HOM05D005216 ORTHO05D006453 2.3e-14 83.6 44 79.5
Nitab4.5_0009613g0010 Nicotiana tabacum HOM05D005216 ORTHO05D006453 2.3e-14 83.6 95 50.5
Potri.001G195300 Populus trichocarpa HOM05D005216 ORTHO05D006453 2.3e-14 83.6 44 81.8
SGA_v2.0_scaffold71G23736 Striga asiatica HOM05D005216 ORTHO05D006453 2.3e-14 83.6 51 68.6
Peaxi162Scf00038g01234 Petunia axillaris HOM05D005216 ORTHO05D006453 3.0e-14 83.2 95 45.3
TAR636G1794 Trochodendron aralioides HOM05D005216 ORTHO05D006453 3.0e-14 83.2 81 54.3
GSVIVG01016904001 Vitis vinifera HOM05D005216 ORTHO05D006453 3.0e-14 83.2 74 55.4
Lj5A50G63 Lonicera japonica HOM05D005216 ORTHO05D006453 3.9e-14 82.8 44 79.5
Solyc03g121260.3 Solanum lycopersicum HOM05D005216 ORTHO05D006453 3.9e-14 82.8 97 47.4
Thhalv10020447m.g Eutrema salsugineum HOM05D005216 ORTHO05D006453 5.1e-14 82.4 75 52.0
FvH4_6g32800 Fragaria vesca HOM05D005216 ORTHO05D006453 5.1e-14 82.4 79 54.4
Gohir.A10G063600 Gossypium hirsutum HOM05D005216 ORTHO05D006453 5.1e-14 82.4 48 70.8
HPP92_002841 Vanilla planifolia HOM05D005216 ORTHO05D006453 5.1e-14 82.4 44 77.3
HPP92_008116 Vanilla planifolia HOM05D005216 ORTHO05D006453 5.1e-14 82.4 44 77.3
Atru.chr1.3605 Acer truncatum HOM05D005216 ORTHO05D006453 6.6e-14 82.0 101 47.5
BcaC05g28181 Brassica carinata HOM05D005216 ORTHO05D006453 6.6e-14 82.0 86 50.0
C05p42210 Brassica napus HOM05D005216 ORTHO05D006453 6.6e-14 82.0 86 50.0
BolC5t32949H Brassica oleracea HOM05D005216 ORTHO05D006453 6.6e-14 82.0 86 50.0
Ca_01178_v3 Cicer arietinum L. HOM05D005216 ORTHO05D006453 6.6e-14 82.0 44 75.0
Duzib192G0447 Durio zibethinus HOM05D005216 ORTHO05D006453 6.6e-14 82.0 60 63.3
COL.COLO4_30571 Corchorus olitorius HOM05D005216 ORTHO05D006453 8.7e-14 81.6 79 51.9
Eucgr.J02895 Eucalyptus grandis HOM05D005216 ORTHO05D006453 8.7e-14 81.6 53 67.9
Prupe.3G054000 Prunus persica HOM05D005216 ORTHO05D006453 8.7e-14 81.6 86 50.0
PGR102G1400 Punica granatum HOM05D005216 ORTHO05D006453 8.7e-14 81.6 96 46.9
Sopen03g040070 Solanum pennellii HOM05D005216 ORTHO05D006453 8.7e-14 81.6 97 46.4
CANSAT56G3252 Cannabis sativa HOM05D005216 ORTHO05D006453 1.1e-13 81.3 74 51.4
Lsat_1_v5_gn_1_36600 Lactuca sativa HOM05D005216 ORTHO05D006453 1.1e-13 81.3 49 69.4
Medtr2g100500 Medicago truncatula HOM05D005216 ORTHO05D006453 1.1e-13 81.3 44 75.0
Psat5g294680 Pisum sativum HOM05D005216 ORTHO05D006453 1.1e-13 81.3 48 70.8
RcHm_v2.0_Chr2g0141991 Rosa chinensis HOM05D005216 ORTHO05D006453 1.1e-13 81.3 79 54.4
Hund00732 Selenicereus undatus HOM05D005216 ORTHO05D006453 1.1e-13 81.3 46 73.9
PGSC0003DMG400002513 Solanum tuberosum HOM05D005216 ORTHO05D006453 1.1e-13 81.3 97 46.4
Aqoxy7G03942 Aquilegia oxysepala HOM05D005216 ORTHO05D006453 1.5e-13 80.9 45 75.6
Sc15g0000030 Simmondsia chinensis HOM05D005216 ORTHO05D006453 1.5e-13 80.9 48 68.8
Cpa.g.sc131.16 Carica papaya HOM05D005216 ORTHO05D006453 1.9e-13 80.5 92 45.7
Ciclev10025277m.g Citrus clementina HOM05D005216 ORTHO05D006453 1.9e-13 80.5 115 40.9
Lalb_Chr14g0372921 Lupinus albus HOM05D005216 ORTHO05D006453 2.5e-13 80.1 93 47.3
Phvul.005G161800 Phaseolus vulgaris HOM05D005216 ORTHO05D006453 2.5e-13 80.1 46 73.9
VMungo1080G0616 Vigna mungo HOM05D005216 ORTHO05D006453 2.5e-13 80.1 46 71.7
Ah.01g017050 Amaranthus hybridus HOM05D005216 ORTHO05D006453 4.3e-13 79.3 45 71.1
MSTRG.22612 Avicennia marina HOM05D005216 ORTHO05D006453 4.3e-13 79.3 44 70.5
A05p27300 Brassica napus HOM05D005216 ORTHO05D006453 4.3e-13 79.3 83 49.4
BraA05t21622Z Brassica rapa HOM05D005216 ORTHO05D006453 4.3e-13 79.3 83 48.2
Manes.11G029600 Manihot esculenta HOM05D005216 ORTHO05D006453 4.3e-13 79.3 78 48.7
Nn8g38966 Nelumbo nucifera HOM05D005216 ORTHO05D006453 4.3e-13 79.3 47 68.1
SMO118G0221 Selaginella moellendorffii HOM05D005216 ORTHO05D006453 4.3e-13 79.3 81 50.6
unitig_32.g11583 Utricularia gibba HOM05D005216 ORTHO05D006453 4.3e-13 79.3 79 51.9
Haze_15911 Corylus avellana HOM05D005216 ORTHO05D006453 5.6e-13 79.0 72 59.7
MBI01_g16587_MAGBIO Magnolia biondii HOM05D005216 ORTHO05D006453 5.6e-13 79.0 46 69.6
Mapoly0054s0113 Marchantia polymorpha HOM05D005216 ORTHO05D006453 5.6e-13 79.0 65 53.8
SalBow6G0343 Salvia bowleyana HOM05D005216 ORTHO05D006453 5.6e-13 79.0 49 65.3
Sp3g19360 Schrenkiella parvula HOM05D005216 ORTHO05D006453 7.3e-13 78.6 85 52.9
Carub.0003s2133 Capsella rubella HOM05D005216 ORTHO05D006453 9.6e-13 78.2 83 50.6
CARHR097230 Cardamine hirsuta HOM05D005216 ORTHO05D006453 9.6e-13 78.2 78 48.7
DCAR_031420 Daucus carota HOM05D005216 ORTHO05D006453 9.6e-13 78.2 82 47.6
AL3G35360 Arabidopsis lyrata HOM05D005216 ORTHO05D006453 2.1e-12 77.0 79 46.8
AUR62022292 Chenopodium quinoa HOM05D005216 ORTHO05D006453 2.1e-12 77.0 89 43.8
Oeu052821.2 Olea europaea HOM05D005216 ORTHO05D006453 2.1e-12 77.0 90 46.7
Aa31LG8G8010 Aethionema arabicum HOM05D005216 ORTHO05D006453 3.6e-12 76.3 77 53.2
BcaB06g26221 Brassica carinata HOM05D005216 ORTHO05D006453 3.6e-12 76.3 94 44.7
TPR.G6542 Trifolium pratense HOM05D005216 ORTHO05D006453 3.6e-12 76.3 44 70.5
AagrBONN_evm.TU.Sc2ySwM_368.3132 Anthoceros agrestis HOM05D005216 ORTHO05D006453 4.8e-12 75.9 84 47.6
AUR62023880 Chenopodium quinoa HOM05D005216 ORTHO05D006453 4.8e-12 75.9 89 42.7
Migut.I00980 Erythranthe guttata HOM05D005216 ORTHO05D006453 4.8e-12 75.9 45 66.7
AT3G21300 Arabidopsis thaliana HOM05D005216 ORTHO05D006453 6.2e-12 75.5 80 47.5
Os01g0193600 Oryza sativa ssp. japonica HOM05D005216 ORTHO05D006453 6.2e-12 75.5 46 69.6
SEGI_30748 Sequoiadendron giganteum HOM05D003193 ORTHO05D017116 6.2e-12 75.5 45 71.1
Glyma.13G352500 Glycine max HOM05D005216 ORTHO05D006453 8.1e-12 75.1 90 46.7
SEGI_20047 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 1.1e-11 74.7 43 83.7
ATR0789G110 Amborella trichopoda HOM05D005216 ORTHO05D006453 1.8e-11 73.9 51 64.7
CBR_g9138 Chara braunii HOM05D005216 ORTHO05D006453 5.3e-11 72.4 42 78.6
CiPaw.02G142800 Carya illinoinensis HOM05D005216 ORTHO05D006453 2.0e-10 70.5 75 52.0
Pp3c25_5440 Physcomitrium patens HOM05D005216 ORTHO05D006453 3.4e-10 69.7 80 43.8
BcaC08g47183 Brassica carinata HOM05D005216 ORTHO05D006453 5.8e-10 68.9 50 60.0
SEGI_35559 Sequoiadendron giganteum HOM05D000725 ORTHO05D002005 9.9e-10 68.2 60 50.0
BraA09t38361Z Brassica rapa HOM05D005216 ORTHO05D006453 8.4e-09 65.1 35 77.1
A06p35760 Brassica napus HOM05D005216 ORTHO05D006453 1.1e-08 64.7 35 74.3
BraA06t26500Z Brassica rapa HOM05D005216 ORTHO05D006453 1.1e-08 64.7 35 74.3
A02p23360 Brassica napus HOM05D005216 ORTHO05D006453 9.3e-08 61.6 35 74.3
BraA03t14429Z Brassica rapa HOM05D005216 ORTHO05D006453 9.3e-08 61.6 35 74.3
BraA07t29116Z Brassica rapa HOM05D005216 ORTHO05D006453 9.3e-08 61.6 35 74.3
BcaC04g19026 Brassica carinata HOM05D005216 ORTHO05D006453 1.2e-07 61.2 34 76.5
HPP92_012307 Vanilla planifolia HOM05D005216 ORTHO05D006453 4.6e-07 59.3 33 72.7
BcaC05g28683 Brassica carinata HOM05D005216 ORTHO05D006453 7.9e-07 58.5 48 60.4
PRCOL_00006587 Prasinoderma coloniale HOM05D005216 ORTHO05D006453 3.9e-06 56.2 47 53.2


User provided reference genes

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