Gene: Solyc03g121260.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g121260.3
  • Transcript Identifier Solyc03g121260.3.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 63860853-63866800 : negative

Gene Family Information

  • ID HOM05D005216
  • #Genes/#Species 144/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g121260.3.1
  • uniprot A0A3Q7GL13
  • gene_id Solyc03g121260

Descriptions

  • Description 23S rRNA (Uracil-5-)-methyltransferase rumA (AHRD V3.3 *** A0A2K3PEV5_TRIPR)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G21300
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing
GO:0006139
IEA
GOA Databasenucleobase-containing compound metabolic process
GO:0032259
IEA
GOA Databasemethylation
GO:0030488
IEA
GOA DatabasetRNA methylation
GO:0001510
IEA
GOA DatabaseRNA methylation
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008168
IEA
GOA Databasemethyltransferase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G21300
GO:0030696
IBA
GOA DatabasetRNA (m5U54) methyltransferase activity
GO:0008173
IEA
GOA DatabaseRNA methyltransferase activity
GO:0008173
IEA
InterProRNA methyltransferase activity
GO:0008408
IEA
GOA Database3'-5' exonuclease activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0003723
IEA
GOA DatabaseRNA binding

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR010280 (Uracil-5)-methyltransferase family
IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
IPR012340 Nucleic acid-binding, OB-fold
Mapman id Description
16.5.7.7 RNA processing.RNA modification.tRNA methylation.tRNA uridine-methyltransferase (TRM2)